Guide to the Human Genome
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Name: LOC100290257 Sequence: fasta or formatted (87aa) NCBI GI: 239749228
Description:

PREDICTED: hypothetical protein XP_002346971

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9          6           1
 C cysteine            0.0          0           0
 D aspartate           6.9          6           1
 E glutamate           1.1          1           1
 F phenylalanine       1.1          1           1
 G glycine             3.4          3           1
 H histidine           4.6          4           1
 I isoleucine          9.2          8           1
 K lysine             12.6         11           2
 L leucine            13.8         12           3
 M methionine          2.3          2           1
 N asparagine          4.6          4           2
 P proline             2.3          2           1
 Q glutamine           4.6          4           2
 R arginine            3.4          3           2
 S serine              1.1          1           1
 T threonine           9.2          8           1
 V valine              8.0          7           1
 W tryptophan          3.4          3           1
 Y tyrosine            1.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346971 
LOC100287434          1.000   PREDICTED: hypothetical protein XP_002342821 
RPL23A                0.386   ribosomal protein L23a 
LOC731985             0.327   PREDICTED: similar to ribosomal protein L23a 
LOC100293728          0.150   PREDICTED: similar to hCG1776279 
LOC100288802          0.150   PREDICTED: similar to hCG1776279 
LOC100288802          0.150   PREDICTED: hypothetical protein XP_002342458 
CUL9                  0.020   p53-associated parkin-like cytoplasmic protein [Homo...
TOP2A                 0.013   DNA topoisomerase II, alpha isozyme 
S1PR3                 0.007   sphingosine-1-phosphate receptor 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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