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Search of human proteins with 17017967
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17017967 barttin [Homo sapiens]
(320 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|17017967 barttin [Homo sapiens] 670 0.0
gi|94721340 SID1 transmembrane family, member 2 [Homo sapiens] 35 0.12
gi|226437579 NAC alpha domain containing [Homo sapiens] 34 0.20
gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens] 34 0.20
gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens] 34 0.20
gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens] 34 0.20
gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens] 34 0.20
gi|169160607 PREDICTED: hypothetical protein LOC100128071 [Homo ... 33 0.26
gi|169161545 PREDICTED: hypothetical protein LOC100128071 [Homo ... 33 0.26
gi|169161248 PREDICTED: hypothetical protein LOC100128071 [Homo ... 33 0.26
gi|194018513 patched domain containing 3 [Homo sapiens] 33 0.26
gi|28269687 zygote arrest 1 [Homo sapiens] 33 0.34
gi|46560555 transmembrane protein 132E [Homo sapiens] 33 0.44
gi|7657665 zinc finger and BTB domain containing 32 [Homo sapiens] 32 0.58
gi|37537554 hypothetical protein FLJ37538 [Homo sapiens] 32 0.75
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 32 0.98
gi|194248057 growth associated protein 43 isoform 1 [Homo sapiens] 32 0.98
gi|4503911 growth associated protein 43 isoform 2 [Homo sapiens] 32 0.98
gi|7706537 mitogen-activated protein kinase 8 interacting protei... 32 0.98
gi|239049540 FCH domain only 1 isoform c [Homo sapiens] 31 1.3
gi|239049457 FCH domain only 1 isoform b [Homo sapiens] 31 1.3
gi|29789054 FCH domain only 1 isoform b [Homo sapiens] 31 1.3
gi|239049440 FCH domain only 1 isoform a [Homo sapiens] 31 1.3
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 31 1.3
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 31 1.3
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 31 1.3
gi|38348236 zinc finger protein 497 [Homo sapiens] 31 1.3
gi|211904182 DDB1 and CUL4 associated factor 8-like 2 [Homo sapi... 31 1.7
gi|55741677 SET domain containing 1A [Homo sapiens] 31 1.7
gi|217272874 coiled-coil domain containing 37 [Homo sapiens] 31 1.7
>gi|17017967 barttin [Homo sapiens]
Length = 320
Score = 670 bits (1728), Expect = 0.0
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MADEKTFRIGFIVLGLFLLALGTFLMSHDRPQVYGTFYAMGSVMVIGGIIWSMCQCYPKI 60
MADEKTFRIGFIVLGLFLLALGTFLMSHDRPQVYGTFYAMGSVMVIGGIIWSMCQCYPKI
Sbjct: 1 MADEKTFRIGFIVLGLFLLALGTFLMSHDRPQVYGTFYAMGSVMVIGGIIWSMCQCYPKI 60
Query: 61 TFVPADSDFQGILSPKAMGLLENGLAAEMKSPSPQPPYVRLWEEAAYDQSLPDFSHIQMK 120
TFVPADSDFQGILSPKAMGLLENGLAAEMKSPSPQPPYVRLWEEAAYDQSLPDFSHIQMK
Sbjct: 61 TFVPADSDFQGILSPKAMGLLENGLAAEMKSPSPQPPYVRLWEEAAYDQSLPDFSHIQMK 120
Query: 121 VMSYSEDHRSLLAPEMGQPKLGTSDGGEGGPGDVQAWMEAAVVIHKGSDESEGERRLTQS 180
VMSYSEDHRSLLAPEMGQPKLGTSDGGEGGPGDVQAWMEAAVVIHKGSDESEGERRLTQS
Sbjct: 121 VMSYSEDHRSLLAPEMGQPKLGTSDGGEGGPGDVQAWMEAAVVIHKGSDESEGERRLTQS 180
Query: 181 WPGPLACPQGPAPLASFQDDLDMDSSEGSSPNASPHDREEACSPQQEPQGCRCPLDRFQD 240
WPGPLACPQGPAPLASFQDDLDMDSSEGSSPNASPHDREEACSPQQEPQGCRCPLDRFQD
Sbjct: 181 WPGPLACPQGPAPLASFQDDLDMDSSEGSSPNASPHDREEACSPQQEPQGCRCPLDRFQD 240
Query: 241 FALIDAPTLEDEPQEGQQWEIALPNNWQRYPRTKVEEKEASDTGGEEPEKEEEDLYYGLP 300
FALIDAPTLEDEPQEGQQWEIALPNNWQRYPRTKVEEKEASDTGGEEPEKEEEDLYYGLP
Sbjct: 241 FALIDAPTLEDEPQEGQQWEIALPNNWQRYPRTKVEEKEASDTGGEEPEKEEEDLYYGLP 300
Query: 301 DGAGDLLPDKELGFEPDTQG 320
DGAGDLLPDKELGFEPDTQG
Sbjct: 301 DGAGDLLPDKELGFEPDTQG 320
>gi|94721340 SID1 transmembrane family, member 2 [Homo sapiens]
Length = 832
Score = 34.7 bits (78), Expect = 0.12
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 15/85 (17%)
Query: 9 IGFIVLGL-FLLALGTFLMSHDR--------------PQVYGTFYAMGSVMVIGGIIWSM 53
+G+I+LGL FLL + ++H+R P+ +G FYAMG+ +++ G++ +
Sbjct: 507 LGYILLGLLFLLIILQREINHNRALLRNDLCALECGIPKHFGLFYAMGTALMMEGLLSAC 566
Query: 54 CQCYPKITFVPADSDFQGILSPKAM 78
P T D+ F +++ M
Sbjct: 567 YHVCPNYTNFQFDTSFMYMIAGLCM 591
>gi|226437579 NAC alpha domain containing [Homo sapiens]
Length = 1562
Score = 33.9 bits (76), Expect = 0.20
Identities = 54/286 (18%), Positives = 91/286 (31%), Gaps = 62/286 (21%)
Query: 39 AMGSVMVIGGIIWSMCQCYP-----KITFVPADSDFQGILSPKAMGLLENGLAAEMKSPS 93
A + ++GG C P +TF+P+ + + G + P
Sbjct: 28 AAAATTILGGDRREPCALTPGPSHLALTFLPSKPGARPQPEGASWDAGPGGAPSAWADPG 87
Query: 94 PQPPYVRLWEEAAYDQSL----PDFSHIQMKVMSYSEDHRSLLAPEMGQPKLGTSDGGEG 149
P L E Q+L P + ++ +++ E ++LL+P + L +GG
Sbjct: 88 EGGPSPMLLPEGLSSQALSTEAPLPATLEPRIVMGEETCQALLSPRAARTALRDQEGGHA 147
Query: 150 GPGDVQAWMEAAVVIHKGSDESEGERRLTQSWPGPLACPQGPAPLASFQDDLDMDSSEGS 209
P P P C QG + S D D + S
Sbjct: 148 SPD-----------------------------PPPELCSQGDLSVPSPPPDPDSFFTPPS 178
Query: 210 SPNASPHDREEACSPQQEPQGCRCPLDRFQDFALIDAPTLEDE----PQEGQQWE----- 260
+P + + AC P + + L L+D+P +G W
Sbjct: 179 TPTKTTYALLPACGPHGDARDSEAELRD----ELLDSPPASPSGSYITADGDSWASSPSC 234
Query: 261 ----------IALPNNWQRYPR-TKVEEKEASDTGGEEPEKEEEDL 295
+ P+ W P+ + V+E+E G EP E L
Sbjct: 235 SLSLLAPAEGLDFPSGWGLSPQGSMVDERELHPAGTPEPPSSESSL 280
>gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 33.9 bits (76), Expect = 0.20
Identities = 54/286 (18%), Positives = 91/286 (31%), Gaps = 62/286 (21%)
Query: 39 AMGSVMVIGGIIWSMCQCYP-----KITFVPADSDFQGILSPKAMGLLENGLAAEMKSPS 93
A + ++GG C P +TF+P+ + + G + P
Sbjct: 28 AAAATTILGGDRREPCALTPGPSHLALTFLPSKPGARPQPEGASWDAGPGGAPSAWADPG 87
Query: 94 PQPPYVRLWEEAAYDQSL----PDFSHIQMKVMSYSEDHRSLLAPEMGQPKLGTSDGGEG 149
P L E Q+L P + ++ +++ E ++LL+P + L +GG
Sbjct: 88 EGGPSPMLLPEGLSSQALSTEAPLPATLEPRIVMGEETCQALLSPRAARTALRDQEGGHA 147
Query: 150 GPGDVQAWMEAAVVIHKGSDESEGERRLTQSWPGPLACPQGPAPLASFQDDLDMDSSEGS 209
P P P C QG + S D D + S
Sbjct: 148 SPD-----------------------------PPPELCSQGDLSVPSPPPDPDSFFTPPS 178
Query: 210 SPNASPHDREEACSPQQEPQGCRCPLDRFQDFALIDAPTLEDE----PQEGQQWE----- 260
+P + + AC P + + L L+D+P +G W
Sbjct: 179 TPTKTTYALLPACGPHGDARDSEAELRD----ELLDSPPASPSGSYITADGDSWASSPSC 234
Query: 261 ----------IALPNNWQRYPR-TKVEEKEASDTGGEEPEKEEEDL 295
+ P+ W P+ + V+E+E G EP E L
Sbjct: 235 SLSLLAPAEGLDFPSGWGLSPQGSMVDERELHPAGTPEPPSSESSL 280
>gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 33.9 bits (76), Expect = 0.20
Identities = 54/286 (18%), Positives = 91/286 (31%), Gaps = 62/286 (21%)
Query: 39 AMGSVMVIGGIIWSMCQCYP-----KITFVPADSDFQGILSPKAMGLLENGLAAEMKSPS 93
A + ++GG C P +TF+P+ + + G + P
Sbjct: 28 AAAATTILGGDRREPCALTPGPSHLALTFLPSKPGARPQPEGASWDAGPGGAPSAWADPG 87
Query: 94 PQPPYVRLWEEAAYDQSL----PDFSHIQMKVMSYSEDHRSLLAPEMGQPKLGTSDGGEG 149
P L E Q+L P + ++ +++ E ++LL+P + L +GG
Sbjct: 88 EGGPSPMLLPEGLSSQALSTEAPLPATLEPRIVMGEETCQALLSPRAARTALRDQEGGHA 147
Query: 150 GPGDVQAWMEAAVVIHKGSDESEGERRLTQSWPGPLACPQGPAPLASFQDDLDMDSSEGS 209
P P P C QG + S D D + S
Sbjct: 148 SPD-----------------------------PPPELCSQGDLSVPSPPPDPDSFFTPPS 178
Query: 210 SPNASPHDREEACSPQQEPQGCRCPLDRFQDFALIDAPTLEDE----PQEGQQWE----- 260
+P + + AC P + + L L+D+P +G W
Sbjct: 179 TPTKTTYALLPACGPHGDARDSEAELRD----ELLDSPPASPSGSYITADGDSWASSPSC 234
Query: 261 ----------IALPNNWQRYPR-TKVEEKEASDTGGEEPEKEEEDL 295
+ P+ W P+ + V+E+E G EP E L
Sbjct: 235 SLSLLAPAEGLDFPSGWGLSPQGSMVDERELHPAGTPEPPSSESSL 280
>gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1562
Score = 33.9 bits (76), Expect = 0.20
Identities = 54/286 (18%), Positives = 91/286 (31%), Gaps = 62/286 (21%)
Query: 39 AMGSVMVIGGIIWSMCQCYP-----KITFVPADSDFQGILSPKAMGLLENGLAAEMKSPS 93
A + ++GG C P +TF+P+ + + G + P
Sbjct: 28 AAAATTILGGDRREPCALTPGPSHLALTFLPSKPGARPQPEGASWDAGPGGAPSAWADPG 87
Query: 94 PQPPYVRLWEEAAYDQSL----PDFSHIQMKVMSYSEDHRSLLAPEMGQPKLGTSDGGEG 149
P L E Q+L P + ++ +++ E ++LL+P + L +GG
Sbjct: 88 EGGPSPMLLPEGLSSQALSTEAPLPATLEPRIVMGEETCQALLSPRAARTALRDQEGGHA 147
Query: 150 GPGDVQAWMEAAVVIHKGSDESEGERRLTQSWPGPLACPQGPAPLASFQDDLDMDSSEGS 209
P P P C QG + S D D + S
Sbjct: 148 SPD-----------------------------PPPELCSQGDLSVPSPPPDPDSFFTPPS 178
Query: 210 SPNASPHDREEACSPQQEPQGCRCPLDRFQDFALIDAPTLEDE----PQEGQQWE----- 260
+P + + AC P + + L L+D+P +G W
Sbjct: 179 TPTKTTYALLPACGPHGDARDSEAELRD----ELLDSPPASPSGSYITADGDSWASSPSC 234
Query: 261 ----------IALPNNWQRYPR-TKVEEKEASDTGGEEPEKEEEDL 295
+ P+ W P+ + V+E+E G EP E L
Sbjct: 235 SLSLLAPAEGLDFPSGWGLSPQGSMVDERELHPAGTPEPPSSESSL 280
>gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 33.9 bits (76), Expect = 0.20
Identities = 54/286 (18%), Positives = 91/286 (31%), Gaps = 62/286 (21%)
Query: 39 AMGSVMVIGGIIWSMCQCYP-----KITFVPADSDFQGILSPKAMGLLENGLAAEMKSPS 93
A + ++GG C P +TF+P+ + + G + P
Sbjct: 28 AAAATTILGGDRREPCALTPGPSHLALTFLPSKPGARPQPEGASWDAGPGGAPSAWADPG 87
Query: 94 PQPPYVRLWEEAAYDQSL----PDFSHIQMKVMSYSEDHRSLLAPEMGQPKLGTSDGGEG 149
P L E Q+L P + ++ +++ E ++LL+P + L +GG
Sbjct: 88 EGGPSPMLLPEGLSSQALSTEAPLPATLEPRIVMGEETCQALLSPRAARTALRDQEGGHA 147
Query: 150 GPGDVQAWMEAAVVIHKGSDESEGERRLTQSWPGPLACPQGPAPLASFQDDLDMDSSEGS 209
P P P C QG + S D D + S
Sbjct: 148 SPD-----------------------------PPPELCSQGDLSVPSPPPDPDSFFTPPS 178
Query: 210 SPNASPHDREEACSPQQEPQGCRCPLDRFQDFALIDAPTLEDE----PQEGQQWE----- 260
+P + + AC P + + L L+D+P +G W
Sbjct: 179 TPTKTTYALLPACGPHGDARDSEAELRD----ELLDSPPASPSGSYITADGDSWASSPSC 234
Query: 261 ----------IALPNNWQRYPR-TKVEEKEASDTGGEEPEKEEEDL 295
+ P+ W P+ + V+E+E G EP E L
Sbjct: 235 SLSLLAPAEGLDFPSGWGLSPQGSMVDERELHPAGTPEPPSSESSL 280
>gi|169160607 PREDICTED: hypothetical protein LOC100128071 [Homo
sapiens]
Length = 127
Score = 33.5 bits (75), Expect = 0.26
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 182 PGPLACPQGPAPLASFQDDLDMDSSEGSSPNASPHDREEACSPQQEPQGCRCPLDRFQDF 241
PGP P AP A+ SS G A R S Q+ PQG R P++
Sbjct: 20 PGPERSPAARAPAAA--------SSLGPVSTAGRAPRGLDMSAQEPPQGRRFPIEAGDSR 71
Query: 242 ALIDAPTLEDEPQ 254
L AP +D P+
Sbjct: 72 GLAAAPESQDSPE 84
>gi|169161545 PREDICTED: hypothetical protein LOC100128071 [Homo
sapiens]
Length = 127
Score = 33.5 bits (75), Expect = 0.26
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 182 PGPLACPQGPAPLASFQDDLDMDSSEGSSPNASPHDREEACSPQQEPQGCRCPLDRFQDF 241
PGP P AP A+ SS G A R S Q+ PQG R P++
Sbjct: 20 PGPERSPAARAPAAA--------SSLGPVSTAGRAPRGLDMSAQEPPQGRRFPIEAGDSR 71
Query: 242 ALIDAPTLEDEPQ 254
L AP +D P+
Sbjct: 72 GLAAAPESQDSPE 84
>gi|169161248 PREDICTED: hypothetical protein LOC100128071 [Homo
sapiens]
Length = 127
Score = 33.5 bits (75), Expect = 0.26
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 182 PGPLACPQGPAPLASFQDDLDMDSSEGSSPNASPHDREEACSPQQEPQGCRCPLDRFQDF 241
PGP P AP A+ SS G A R S Q+ PQG R P++
Sbjct: 20 PGPERSPAARAPAAA--------SSLGPVSTAGRAPRGLDMSAQEPPQGRRFPIEAGDSR 71
Query: 242 ALIDAPTLEDEPQ 254
L AP +D P+
Sbjct: 72 GLAAAPESQDSPE 84
>gi|194018513 patched domain containing 3 [Homo sapiens]
Length = 767
Score = 33.5 bits (75), Expect = 0.26
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 165 HKGSDESEGERRLTQSWPGPLACPQGPAPLASFQDDLDMDSSEGSSPNASPHDREEACSP 224
++ S ESE E + Q PGPLA P+ P P + D EG P ++A
Sbjct: 30 YQESQESESEGK--QPPPGPLAPPKSPEPSGPLASEQDAPLPEGDDAPPRPSMLDDA--- 84
Query: 225 QQEPQGCRCPLDRFQDFALIDAPTLEDEPQE 255
R PL+ L DAP E+E E
Sbjct: 85 ------PRLPLE------LDDAPLPEEETPE 103
>gi|28269687 zygote arrest 1 [Homo sapiens]
Length = 424
Score = 33.1 bits (74), Expect = 0.34
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 134 PEMGQPKLGTSDGGEG-------GPGDVQAWMEAAVVIHKGSDESEGERRLTQSWPGPLA 186
P G+ + G SDG G GP + + W + A + D+ E + + SW P
Sbjct: 199 PAAGEQRSGASDGERGPPPARLQGPEEGEVWTKKAPRRPQSDDDGEAQAAVRASWEQPAD 258
Query: 187 CPQGP 191
P+ P
Sbjct: 259 GPELP 263
>gi|46560555 transmembrane protein 132E [Homo sapiens]
Length = 984
Score = 32.7 bits (73), Expect = 0.44
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 285 GEEPEKEEEDLYYGLPDGAGDLLP 308
GEE E+EEEDL +G PD AG P
Sbjct: 944 GEEDEEEEEDLGWGCPDVAGPTRP 967
>gi|7657665 zinc finger and BTB domain containing 32 [Homo sapiens]
Length = 487
Score = 32.3 bits (72), Expect = 0.58
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 155 QAWMEAAVVIHKGSDESE-GERRLTQSWPGPLACPQGPAPLASFQDDLDMDSSEGSSPNA 213
+ W E + + + + + +L S P P + PQGPA L+ + + G+
Sbjct: 288 EVWREQRIPLSLNAPKGLWSQNQLASSSPTPGSLPQGPAQLSPGEMEESDQGHTGALATC 347
Query: 214 SPHDREEACSPQQEP 228
+ H+ + C P+ P
Sbjct: 348 AGHEDKAGCPPRPHP 362
>gi|37537554 hypothetical protein FLJ37538 [Homo sapiens]
Length = 841
Score = 32.0 bits (71), Expect = 0.75
Identities = 55/248 (22%), Positives = 87/248 (35%), Gaps = 50/248 (20%)
Query: 95 QPPYVRLWEEAAYDQSLPDFSHIQMKVMSYSEDH-----RSLLAPE-MGQPKLGTSDGGE 148
Q P VR+ + A+ +SL + M S++H RS +AP + +G+ D
Sbjct: 40 QGPGVRVRDIASLRRSL----RMGFMTMPASQEHTPHPCRSAMAPRSLSCHSVGSMDSVG 95
Query: 149 GGPGDVQAWMEAAVVIHKGSDESEGERRLTQSWPGPLACPQGPAPLASFQDDLDMDSSEG 208
GGPG + + + S GP + + P + + E
Sbjct: 96 GGPGGASGGLTEDSSTRRPPAKPRRHPSTKLSMVGPGSGAETPPSKKAGSQKPTPEGRES 155
Query: 209 S------SPNASPHDR-----EEACSPQQEPQGCRCPLDRFQDFALIDAPTLEDEPQEGQ 257
S P SP+ + +E+C P P+G PL R L + +P G
Sbjct: 156 SRKVPPQKPRRSPNTQLSVSFDESCPPGPSPRGGNLPLQR-----LTRGSRVAGDPDVGA 210
Query: 258 QWE--------------------IALPNNWQRYPRTKVEEKEASDTGGEEPEKEEEDLYY 297
Q E +A P P +D+ EE E E++ Y
Sbjct: 211 QEEPVYIEMVGDVFRGGGRSGGGLAGPPLGGGGPTPPA----GADSDSEESEAIYEEMKY 266
Query: 298 GLPDGAGD 305
LP+ AG+
Sbjct: 267 PLPEEAGE 274
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 31.6 bits (70), Expect = 0.98
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 10/119 (8%)
Query: 184 PLACPQGPAPLASFQDDLDMDSSEGSSPNASPHDREEACSPQQEPQGCRCPLDRFQDFAL 243
P P G P A ++DL + + S + EE ++E + + F++
Sbjct: 862 PEGTPGGGGPPA-LEEDLTVININSSDEEEEEEEEEEEEEEEEEEEE-----EDFEEEEE 915
Query: 244 IDAPTLEDEPQEGQQWEIALPNNWQRYPRTKVEEKEASDTGGEEPEKEEEDLYYGLPDG 302
+ E+E +E +++E ++ EE+E D EE +E EDL +G G
Sbjct: 916 DEEEYFEEEEEEEEEFE----EEFEEEEGELEEEEEEEDEEEEEELEEVEDLEFGTAGG 970
>gi|194248057 growth associated protein 43 isoform 1 [Homo sapiens]
Length = 274
Score = 31.6 bits (70), Expect = 0.98
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 186 ACPQGPAPLASFQDDLDMDSSEGSSPNASPHDREEACSPQQEPQGCRCPLDRFQDFALID 245
A PQ PA + +S+ +S + SP + E ++EP+ P A
Sbjct: 159 AAPQAPASSEEKAGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVP--AAVTAAAAT 216
Query: 246 APTLED-----------EPQEGQQWEIALPNNWQRYPRTKVEEKEASDTG-GEEPEKEEE 293
P ED E E Q E N + TK +E D G EEPE ++E
Sbjct: 217 TPAAEDAAAKATAQPPTETGESSQAE----ENIEAVDETKPKESARQDEGKEEEPEADQE 272
>gi|4503911 growth associated protein 43 isoform 2 [Homo sapiens]
Length = 238
Score = 31.6 bits (70), Expect = 0.98
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 18/120 (15%)
Query: 186 ACPQGPAPLASFQDDLDMDSSEGSSPNASPHDREEACSPQQEPQGCRCPLDRFQDFALID 245
A PQ PA + +S+ +S + SP + E ++EP+ P A
Sbjct: 123 AAPQAPASSEEKAGSAETESATKASTDNSPSSKAEDAPAKEEPKQADVP--AAVTAAAAT 180
Query: 246 APTLED-----------EPQEGQQWEIALPNNWQRYPRTKVEEKEASDTG-GEEPEKEEE 293
P ED E E Q E N + TK +E D G EEPE ++E
Sbjct: 181 TPAAEDAAAKATAQPPTETGESSQAE----ENIEAVDETKPKESARQDEGKEEEPEADQE 236
>gi|7706537 mitogen-activated protein kinase 8 interacting protein 2
isoform 2 [Homo sapiens]
Length = 797
Score = 31.6 bits (70), Expect = 0.98
Identities = 32/111 (28%), Positives = 42/111 (37%), Gaps = 30/111 (27%)
Query: 180 SWPGPLACPQGPAPLAS--FQDDLDMDSSEGSSPNASPHDREEACSPQQEPQGCRCPLDR 237
+W L P GPA L+ QD L + SE P CS Q D
Sbjct: 10 TWAPGLLLPSGPALLSPSVLQDSLSLGRSEQPHP---------ICSFQ----------DD 50
Query: 238 FQDFALIDAPTLEDEPQEGQQWEIALPNNWQRYPRTKVEEKEASDTGGEEP 288
FQ+F +ID ED+ E ++ E + E +E D G E P
Sbjct: 51 FQEFEMIDDNEEEDDEDEEEEEEEEEGDG---------EGQEGGDPGSEAP 92
>gi|239049540 FCH domain only 1 isoform c [Homo sapiens]
Length = 839
Score = 31.2 bits (69), Expect = 1.3
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 185 LACPQGPAPLASFQ----DDLDMDSSEGSSPNASPHDREEACSPQQEPQGCRCPLDRFQD 240
L P+P +S +D +DS ++P SP Q P CR P +
Sbjct: 405 LGFTSSPSPFSSSSPENVEDSGLDSPSHAAPGPSPDSWVPRPGTPQSPPSCRAPPPEARG 464
Query: 241 FALIDAPTLEDEPQ 254
I AP L D PQ
Sbjct: 465 ---IRAPPLPDSPQ 475
>gi|239049457 FCH domain only 1 isoform b [Homo sapiens]
Length = 889
Score = 31.2 bits (69), Expect = 1.3
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 185 LACPQGPAPLASFQ----DDLDMDSSEGSSPNASPHDREEACSPQQEPQGCRCPLDRFQD 240
L P+P +S +D +DS ++P SP Q P CR P +
Sbjct: 455 LGFTSSPSPFSSSSPENVEDSGLDSPSHAAPGPSPDSWVPRPGTPQSPPSCRAPPPEARG 514
Query: 241 FALIDAPTLEDEPQ 254
I AP L D PQ
Sbjct: 515 ---IRAPPLPDSPQ 525
>gi|29789054 FCH domain only 1 isoform b [Homo sapiens]
Length = 889
Score = 31.2 bits (69), Expect = 1.3
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 185 LACPQGPAPLASFQ----DDLDMDSSEGSSPNASPHDREEACSPQQEPQGCRCPLDRFQD 240
L P+P +S +D +DS ++P SP Q P CR P +
Sbjct: 455 LGFTSSPSPFSSSSPENVEDSGLDSPSHAAPGPSPDSWVPRPGTPQSPPSCRAPPPEARG 514
Query: 241 FALIDAPTLEDEPQ 254
I AP L D PQ
Sbjct: 515 ---IRAPPLPDSPQ 525
>gi|239049440 FCH domain only 1 isoform a [Homo sapiens]
Length = 891
Score = 31.2 bits (69), Expect = 1.3
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 185 LACPQGPAPLASFQ----DDLDMDSSEGSSPNASPHDREEACSPQQEPQGCRCPLDRFQD 240
L P+P +S +D +DS ++P SP Q P CR P +
Sbjct: 455 LGFTSSPSPFSSSSPENVEDSGLDSPSHAAPGPSPDSWVPRPGTPQSPPSCRAPPPEARG 514
Query: 241 FALIDAPTLEDEPQ 254
I AP L D PQ
Sbjct: 515 ---IRAPPLPDSPQ 525
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 31.2 bits (69), Expect = 1.3
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 12/41 (29%)
Query: 254 QEGQQWEIALPNNWQRYPRTKVEEKEASDTGGEEPEKEEED 294
+EG QWE K EE+E + G EE EKEEED
Sbjct: 425 KEGVQWE------------AKEEEEEYEEEGEEEGEKEEED 453
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 31.2 bits (69), Expect = 1.3
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 12/41 (29%)
Query: 254 QEGQQWEIALPNNWQRYPRTKVEEKEASDTGGEEPEKEEED 294
+EG QWE K EE+E + G EE EKEEED
Sbjct: 425 KEGVQWE------------AKEEEEEYEEEGEEEGEKEEED 453
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 31.2 bits (69), Expect = 1.3
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 12/41 (29%)
Query: 254 QEGQQWEIALPNNWQRYPRTKVEEKEASDTGGEEPEKEEED 294
+EG QWE K EE+E + G EE EKEEED
Sbjct: 484 KEGVQWE------------AKEEEEEYEEEGEEEGEKEEED 512
>gi|38348236 zinc finger protein 497 [Homo sapiens]
Length = 498
Score = 31.2 bits (69), Expect = 1.3
Identities = 33/111 (29%), Positives = 40/111 (36%), Gaps = 22/111 (19%)
Query: 132 LAPEMGQP----KLGTSDGGEGG-PGDVQAWMEAAVVIHKGSDESEGERRL----TQSWP 182
+APE GQ K T EG G AW + V + D + L Q P
Sbjct: 11 VAPEEGQVLCNVKTATRGLSEGAVSGGWGAWENSTEVPREAGDGQRQQATLGAADEQGGP 70
Query: 183 GPLACPQGPAPLASFQDDLDMDSSEGSSPNASPHDREEACSPQQEPQGCRC 233
G GPA +G+ P + P DR SP E GCRC
Sbjct: 71 GR---ELGPAD----------GGRDGAGPRSEPADRALRPSPLPEEPGCRC 108
>gi|211904182 DDB1 and CUL4 associated factor 8-like 2 [Homo
sapiens]
Length = 631
Score = 30.8 bits (68), Expect = 1.7
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 204 DSSEGSSPN-ASPHDREEACSPQQEPQGCRCPLDRFQDF--------ALIDAPTLEDEPQ 254
DS +G PN AS +R S QE L+ +DF +L P + +E
Sbjct: 56 DSRDGGFPNDASTENR----SSDQESASEDIELESLEDFEHFLMSGESLFHYPLVGEEET 111
Query: 255 EGQQWEIALPNNWQRYPRTKVEEKEASDTGGEEPEKEEEDLYYGLPDGAG 304
E ++ + + Q + EE+E + EE E+EEE+ P G+G
Sbjct: 112 EREEEDEEI----QEEGGEEEEEEEEEEEEEEEEEEEEEEQPRAGPQGSG 157
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 30.8 bits (68), Expect = 1.7
Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 5/126 (3%)
Query: 188 PQGPAPLASFQDDLDMDSSEGSS--PNASPHDREEACSPQQEPQGCRCPLDRFQDFALID 245
P+ P +DD + + G P P R+E Q LD + A +
Sbjct: 912 PRPSTPAEEDEDDPEQEKEAGEPGRPGTKPPKRDEERGKTQGKHRKSFALDSEGEEASQE 971
Query: 246 APTLEDEPQEGQQWEIALPNNWQRYPRTKVEEKEASDTGGEEPEKEEEDLYYGLPDGAGD 305
+ + +DE + + E + + T +E E SD EE + + Y DG D
Sbjct: 972 SSSEKDEEDDEEDEE---DEDREEAVDTTKKETEVSDGEDEESDSSSKCSLYADSDGEND 1028
Query: 306 LLPDKE 311
D E
Sbjct: 1029 STSDSE 1034
>gi|217272874 coiled-coil domain containing 37 [Homo sapiens]
Length = 611
Score = 30.8 bits (68), Expect = 1.7
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 11/114 (9%)
Query: 204 DSSEGSSPNASPHDREEACSPQ------QEPQGCRCPLDRFQDFALIDAPTLEDEPQEGQ 257
++S+ SS N++P D+ + +E QG + P Q L +P+ PQ+G
Sbjct: 290 EASKESSVNSTPGDKGPGIKGKASSMWAKEGQGTKKPWRFLQTMRLGRSPSYLSSPQQGS 349
Query: 258 QWEIALPNNWQRYPRTKVEEKEASDTGGEEPEKEEEDLYYGLPDGAGDLLPDKE 311
Q + + + +E +D+ GEEP+ LY+ P D+ + E
Sbjct: 350 QPSESSGGDSRGSNSPIPPTQEDTDSDGEEPQ-----LYFTEPQQLLDVFRELE 398
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.135 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,158,899
Number of Sequences: 37866
Number of extensions: 938019
Number of successful extensions: 3307
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 3151
Number of HSP's gapped (non-prelim): 191
length of query: 320
length of database: 18,247,518
effective HSP length: 102
effective length of query: 218
effective length of database: 14,385,186
effective search space: 3135970548
effective search space used: 3135970548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.