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Search of human proteins with 169790973
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169790973 parkin isoform 3 [Homo sapiens]
(316 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169790973 parkin isoform 3 [Homo sapiens] 689 0.0
gi|169790971 parkin isoform 2 [Homo sapiens] 579 e-165
gi|169790969 parkin isoform 1 [Homo sapiens] 578 e-165
gi|187761373 ariadne ubiquitin-conjugating enzyme E2 binding pro... 84 1e-16
gi|5453557 ariadne homolog 2 [Homo sapiens] 77 2e-14
gi|34577102 ring finger protein 14 isoform 1 [Homo sapiens] 77 3e-14
gi|34577100 ring finger protein 14 isoform 1 [Homo sapiens] 77 3e-14
gi|34577098 ring finger protein 14 isoform 1 [Homo sapiens] 77 3e-14
gi|34577096 ring finger protein 14 isoform 2 [Homo sapiens] 77 3e-14
gi|4757762 ring finger protein 14 isoform 1 [Homo sapiens] 77 3e-14
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo... 67 2e-11
gi|148596953 ankyrin repeat and IBR domain containing 1 [Homo sa... 64 1e-10
gi|35493801 ring finger protein 19 [Homo sapiens] 60 3e-09
gi|35493782 ring finger protein 19 [Homo sapiens] 60 3e-09
gi|188219577 ring finger protein 19B isoform a [Homo sapiens] 58 1e-08
gi|188219579 ring finger protein 19B isoform b [Homo sapiens] 56 4e-08
gi|38045938 ring finger protein 144 [Homo sapiens] 53 4e-07
gi|22749145 ring finger protein 217 [Homo sapiens] 52 9e-07
gi|5454168 RanBP-type and C3HC4-type zinc finger containing 1 is... 48 1e-05
gi|144953898 RanBP-type and C3HC4-type zinc finger containing 1 ... 48 1e-05
gi|46370057 ring finger protein 216 isoform b [Homo sapiens] 44 1e-04
gi|46358403 ring finger protein 216 isoform a [Homo sapiens] 44 1e-04
gi|50284696 IBR domain containing 2 [Homo sapiens] 44 2e-04
gi|67191208 ubiquitin C [Homo sapiens] 43 3e-04
gi|11024714 ubiquitin B precursor [Homo sapiens] 42 5e-04
gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom... 42 5e-04
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ... 42 5e-04
gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo s... 42 5e-04
gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo ... 42 5e-04
gi|109150431 ring finger protein 31 [Homo sapiens] 41 0.002
>gi|169790973 parkin isoform 3 [Homo sapiens]
Length = 316
Score = 689 bits (1778), Expect = 0.0
Identities = 316/316 (100%), Positives = 316/316 (100%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEFF 60
MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEFF
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEFF 60
Query: 61 FKCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFHLYCV 120
FKCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFHLYCV
Sbjct: 61 FKCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFHLYCV 120
Query: 121 TRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGG 180
TRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGG
Sbjct: 121 TRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGG 180
Query: 181 VLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQ 240
VLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQ
Sbjct: 181 VLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQ 240
Query: 241 AYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNC 300
AYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNC
Sbjct: 241 AYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNC 300
Query: 301 GCEWNRVCMGDHWFDV 316
GCEWNRVCMGDHWFDV
Sbjct: 301 GCEWNRVCMGDHWFDV 316
>gi|169790971 parkin isoform 2 [Homo sapiens]
Length = 437
Score = 579 bits (1493), Expect = e-165
Identities = 260/260 (100%), Positives = 260/260 (100%)
Query: 57 QEFFFKCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFH 116
QEFFFKCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFH
Sbjct: 178 QEFFFKCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDCFH 237
Query: 117 LYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVL 176
LYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVL
Sbjct: 238 LYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVL 297
Query: 177 QMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASG 236
QMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASG
Sbjct: 298 QMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASG 357
Query: 237 TTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEW 296
TTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEW
Sbjct: 358 TTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEW 417
Query: 297 CWNCGCEWNRVCMGDHWFDV 316
CWNCGCEWNRVCMGDHWFDV
Sbjct: 418 CWNCGCEWNRVCMGDHWFDV 437
Score = 116 bits (290), Expect = 3e-26
Identities = 57/57 (100%), Positives = 57/57 (100%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQ 57
MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQ
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQ 57
>gi|169790969 parkin isoform 1 [Homo sapiens]
Length = 465
Score = 578 bits (1490), Expect = e-165
Identities = 260/262 (99%), Positives = 260/262 (99%)
Query: 55 TVQEFFFKCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDC 114
T EFFFKCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDC
Sbjct: 204 TSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVFQCNSRHVICLDC 263
Query: 115 FHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEEC 174
FHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEEC
Sbjct: 264 FHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEEC 323
Query: 175 VLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEA 234
VLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEA
Sbjct: 324 VLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEA 383
Query: 235 SGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRL 294
SGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRL
Sbjct: 384 SGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRL 443
Query: 295 EWCWNCGCEWNRVCMGDHWFDV 316
EWCWNCGCEWNRVCMGDHWFDV
Sbjct: 444 EWCWNCGCEWNRVCMGDHWFDV 465
Score = 116 bits (290), Expect = 3e-26
Identities = 57/57 (100%), Positives = 57/57 (100%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQ 57
MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQ
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQ 57
>gi|187761373 ariadne ubiquitin-conjugating enzyme E2 binding
protein homolog 1 [Homo sapiens]
Length = 557
Score = 84.3 bits (207), Expect = 1e-16
Identities = 65/269 (24%), Positives = 118/269 (43%), Gaps = 37/269 (13%)
Query: 53 DWTVQEFFFKCGAHPTSDKETSVALHLIATNSRNITCITCTDVRSPVLVF---QCNSRHV 109
D +++ F +C S K + ++ ++++++ C C + P F +C H
Sbjct: 151 DGNLEKLFAECHVINPSKKSRTRQMNT-RSSAQDMPCQICY-LNYPNSYFTGLECG--HK 206
Query: 110 ICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQY 169
C+ C+ Y T++ + +G ++ C A + L+ + R++ + + Q+
Sbjct: 207 FCMQCWSEYLTTKIMEEG------MGQTISCPAHGCDILVDDNTVMRLITDSKVKLKYQH 260
Query: 170 GAEECVLQMGGVL--CPRPGCGAGLLPE-PDQRKVTCEGGNGLGCGFAFCRECKEAYHEG 226
++ +L CP P C + + PD + V C+ CG FC C E +H+
Sbjct: 261 LITNSFVECNRLLKWCPAPDCHHVVKVQYPDAKPVRCK------CGRQFCFNCGENWHDP 314
Query: 227 ECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMK 286
+ + D+ + E + W AA+ TK CP+CHV +EK+GGC HM
Sbjct: 315 -----VKCKWLKKWIKKCDDDS-ETSNWIAAN-------TKECPKCHVTIEKDGGCNHMV 361
Query: 287 CPQPQCRLEWCWNCGCEWNRVCMGDHWFD 315
C C+ E+CW C W G W++
Sbjct: 362 CRNQNCKAEFCWVCLGPWEP--HGSAWYN 388
>gi|5453557 ariadne homolog 2 [Homo sapiens]
Length = 493
Score = 77.4 bits (189), Expect = 2e-14
Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 32/220 (14%)
Query: 89 CITCTDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVA-GCPNS 147
C C + +H C C+ +C + D +G + C+A CP
Sbjct: 139 CAVCMQFVRKENLLSLACQHQFCRSCWEQHCSVLVKDG-------VGVGVSCMAQDCPLR 191
Query: 148 LIKELHHFRILGEEQYNRYQQYGAEECVLQMGGV-LCPRPGCGAGL-LPEPDQRKVTCEG 205
++ + EE +Y++Y + V + LCP C + + EP R+V C
Sbjct: 192 TPEDFVFPLLPNEELREKYRRYLFRDYVESHYQLQLCPGADCPMVIRVQEPRARRVQCNR 251
Query: 206 GNGLGCGFAFCRECKEAYHEG-ECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKK 264
C FC +C++ YH +C+ + + + ++ + I
Sbjct: 252 -----CNEVFCFKCRQMYHAPTDCATI--------------RKWLTKCADDSETANYISA 292
Query: 265 TTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEW 304
TK CP+C++ +EKNGGC HM+C +C+ ++CW C +W
Sbjct: 293 HTKDCPKCNICIEKNGGCNHMQC--SKCKHDFCWMCLGDW 330
>gi|34577102 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 76.6 bits (187), Expect = 3e-14
Identities = 68/251 (27%), Positives = 98/251 (39%), Gaps = 34/251 (13%)
Query: 83 NSRNITCITC-TDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQF--VHDPQLGYSLP 139
NS+ C C + ++ RHV C C Y ++ D Q ++ P+
Sbjct: 214 NSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEP----K 269
Query: 140 CVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGVL-CPRPGCGAGLLPEPDQ 198
C + +KEL + E + RY + + + M V+ CPRP C ++ EP
Sbjct: 270 CPSVATPGQVKEL-----VEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPG- 323
Query: 199 RKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAVFEASGTTTQAY-------------RV 244
C G C FAFC C+ YH C E Y R
Sbjct: 324 ----CTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRY 379
Query: 245 DERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEW 304
+R ++A E SKE ++K +K CP C P+EK GC M C C +CW C
Sbjct: 380 GKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTC--TGCMQYFCWICMGSL 437
Query: 305 NRVCMGDHWFD 315
+R H+ D
Sbjct: 438 SRANPYKHFND 448
>gi|34577100 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 76.6 bits (187), Expect = 3e-14
Identities = 68/251 (27%), Positives = 98/251 (39%), Gaps = 34/251 (13%)
Query: 83 NSRNITCITC-TDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQF--VHDPQLGYSLP 139
NS+ C C + ++ RHV C C Y ++ D Q ++ P+
Sbjct: 214 NSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEP----K 269
Query: 140 CVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGVL-CPRPGCGAGLLPEPDQ 198
C + +KEL + E + RY + + + M V+ CPRP C ++ EP
Sbjct: 270 CPSVATPGQVKEL-----VEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPG- 323
Query: 199 RKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAVFEASGTTTQAY-------------RV 244
C G C FAFC C+ YH C E Y R
Sbjct: 324 ----CTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRY 379
Query: 245 DERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEW 304
+R ++A E SKE ++K +K CP C P+EK GC M C C +CW C
Sbjct: 380 GKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTC--TGCMQYFCWICMGSL 437
Query: 305 NRVCMGDHWFD 315
+R H+ D
Sbjct: 438 SRANPYKHFND 448
>gi|34577098 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 76.6 bits (187), Expect = 3e-14
Identities = 68/251 (27%), Positives = 98/251 (39%), Gaps = 34/251 (13%)
Query: 83 NSRNITCITC-TDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQF--VHDPQLGYSLP 139
NS+ C C + ++ RHV C C Y ++ D Q ++ P+
Sbjct: 214 NSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEP----K 269
Query: 140 CVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGVL-CPRPGCGAGLLPEPDQ 198
C + +KEL + E + RY + + + M V+ CPRP C ++ EP
Sbjct: 270 CPSVATPGQVKEL-----VEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPG- 323
Query: 199 RKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAVFEASGTTTQAY-------------RV 244
C G C FAFC C+ YH C E Y R
Sbjct: 324 ----CTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRY 379
Query: 245 DERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEW 304
+R ++A E SKE ++K +K CP C P+EK GC M C C +CW C
Sbjct: 380 GKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTC--TGCMQYFCWICMGSL 437
Query: 305 NRVCMGDHWFD 315
+R H+ D
Sbjct: 438 SRANPYKHFND 448
>gi|34577096 ring finger protein 14 isoform 2 [Homo sapiens]
Length = 348
Score = 76.6 bits (187), Expect = 3e-14
Identities = 68/251 (27%), Positives = 98/251 (39%), Gaps = 34/251 (13%)
Query: 83 NSRNITCITC-TDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQF--VHDPQLGYSLP 139
NS+ C C + ++ RHV C C Y ++ D Q ++ P+
Sbjct: 88 NSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEP----K 143
Query: 140 CVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGVL-CPRPGCGAGLLPEPDQ 198
C + +KEL + E + RY + + + M V+ CPRP C ++ EP
Sbjct: 144 CPSVATPGQVKEL-----VEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPG- 197
Query: 199 RKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAVFEASGTTTQAY-------------RV 244
C G C FAFC C+ YH C E Y R
Sbjct: 198 ----CTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRY 253
Query: 245 DERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEW 304
+R ++A E SKE ++K +K CP C P+EK GC M C C +CW C
Sbjct: 254 GKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTC--TGCMQYFCWICMGSL 311
Query: 305 NRVCMGDHWFD 315
+R H+ D
Sbjct: 312 SRANPYKHFND 322
>gi|4757762 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 76.6 bits (187), Expect = 3e-14
Identities = 68/251 (27%), Positives = 98/251 (39%), Gaps = 34/251 (13%)
Query: 83 NSRNITCITC-TDVRSPVLVFQCNSRHVICLDCFHLYCVTRLNDRQF--VHDPQLGYSLP 139
NS+ C C + ++ RHV C C Y ++ D Q ++ P+
Sbjct: 214 NSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEP----K 269
Query: 140 CVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGVL-CPRPGCGAGLLPEPDQ 198
C + +KEL + E + RY + + + M V+ CPRP C ++ EP
Sbjct: 270 CPSVATPGQVKEL-----VEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPG- 323
Query: 199 RKVTCEGGNGLGCGFAFCRECKEAYHE-GECSAVFEASGTTTQAY-------------RV 244
C G C FAFC C+ YH C E Y R
Sbjct: 324 ----CTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRY 379
Query: 245 DERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEW 304
+R ++A E SKE ++K +K CP C P+EK GC M C C +CW C
Sbjct: 380 GKRVIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTC--TGCMQYFCWICMGSL 437
Query: 305 NRVCMGDHWFD 315
+R H+ D
Sbjct: 438 SRANPYKHFND 448
>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
sapiens]
Length = 2517
Score = 67.0 bits (162), Expect = 2e-11
Identities = 54/207 (26%), Positives = 80/207 (38%), Gaps = 37/207 (17%)
Query: 108 HVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPC-VAGCPNSLIKELHHFRILGEEQYNRY 166
H C C++ Y TR+ + L + C +A CP + E ++Y
Sbjct: 2090 HYCCKSCWNEYLTTRI-------EQNLVLNCTCPIADCPAQPTGAFIRAIVSSPEVISKY 2142
Query: 167 QQYGAEECVLQMGGVL-CPRP-GCGAGLLPEPDQRKVTCEGGNGLG-----CGFAFCREC 219
++ V + C P GC ++ C G G G CG+A C C
Sbjct: 2143 EKALLRGYVESCSNLTWCTNPQGCD----------RILCRQGLGCGTTCSKCGWASCFNC 2192
Query: 220 K--EAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVE 277
EA++ C + + + D + EA SK K +K CP C P+E
Sbjct: 2193 SFPEAHYPASCGHMSQ--------WVDDGGYYDGMSVEAQSKHLAKLISKRCPSCQAPIE 2244
Query: 278 KNGGCMHMKCPQPQCRLEWCWNCGCEW 304
KN GC+HM C +C +CW C W
Sbjct: 2245 KNEGCLHMTC--AKCNHGFCWRCLKSW 2269
>gi|148596953 ankyrin repeat and IBR domain containing 1 [Homo
sapiens]
Length = 1089
Score = 64.3 bits (155), Expect = 1e-10
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 28/169 (16%)
Query: 157 ILGEEQYNRYQQYGAEECVLQMGGVL-CPRPGCGAGLLPEPDQRKVTCEGGNGLGC---- 211
++ +E RY Q+ + V + CP PGC + ++T +G N G
Sbjct: 395 VVSKEMDKRYLQFDIKAFVENNPAIKWCPTPGCDRAV-------RLTKQGSNTSGSDTLS 447
Query: 212 -------------GFAFCRECK-EAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAA 257
G FC EC EA+ +C T+ + +A +AA
Sbjct: 448 FPLLRAPAVDCGKGHLFCWECLGEAHEPCDCQTWKNWLQKITEMKPEELVGVSEAYEDAA 507
Query: 258 SKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNR 306
+ + +KPC C P++KN GC HM+C +C+ ++CW C EW +
Sbjct: 508 NCLWLLTNSKPCANCKSPIQKNEGCNHMQC--AKCKYDFCWICLEEWKK 554
>gi|35493801 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 60.1 bits (144), Expect = 3e-09
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 183 CPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGE-CSAVFEASGTTT 239
CP P CG ++ K+TC GCG FC CK+ +H + C A + +
Sbjct: 219 CPAPDCGYAVIAFGCASCPKLTC---GREGCGTEFCYHCKQIWHPNQTCDAARQERAQSL 275
Query: 240 QAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRLEWC 297
+ + + ++ A+ + I KPCPRC + K +G C HM C C E+C
Sbjct: 276 RLRTIRSSSISYSQESGAAADDI----KPCPRCAAYIIKMNDGSCNHMTC--AVCGCEFC 329
Query: 298 WNC 300
W C
Sbjct: 330 WLC 332
>gi|35493782 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 60.1 bits (144), Expect = 3e-09
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 183 CPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGE-CSAVFEASGTTT 239
CP P CG ++ K+TC GCG FC CK+ +H + C A + +
Sbjct: 219 CPAPDCGYAVIAFGCASCPKLTC---GREGCGTEFCYHCKQIWHPNQTCDAARQERAQSL 275
Query: 240 QAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRLEWC 297
+ + + ++ A+ + I KPCPRC + K +G C HM C C E+C
Sbjct: 276 RLRTIRSSSISYSQESGAAADDI----KPCPRCAAYIIKMNDGSCNHMTC--AVCGCEFC 329
Query: 298 WNC 300
W C
Sbjct: 330 WLC 332
>gi|188219577 ring finger protein 19B isoform a [Homo sapiens]
Length = 732
Score = 58.2 bits (139), Expect = 1e-08
Identities = 37/122 (30%), Positives = 50/122 (40%), Gaps = 13/122 (10%)
Query: 183 CPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQ 240
CP P CG ++ K+TCE GC FC CK+ +H + + T
Sbjct: 206 CPAPDCGYAVIAYGCASCPKLTCERE---GCQTEFCYHCKQIWHPNQTCDMARQQRAQTL 262
Query: 241 AYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRLEWCW 298
R + E+ + I KPCPRC + K +G C HM C C E+CW
Sbjct: 263 RVRTKHTSGLSYGQESGPADDI----KPCPRCSAYIIKMNDGSCNHMTC--AVCGCEFCW 316
Query: 299 NC 300
C
Sbjct: 317 LC 318
Score = 28.9 bits (63), Expect = 6.2
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 268 PCPRCHVPVEKNG--GCMHMKCPQPQCRLEWCWNCGCEW--NRVC 308
P P C V G C + C + C+ E+C++C W N+ C
Sbjct: 207 PAPDCGYAVIAYGCASCPKLTCEREGCQTEFCYHCKQIWHPNQTC 251
>gi|188219579 ring finger protein 19B isoform b [Homo sapiens]
Length = 587
Score = 56.2 bits (134), Expect = 4e-08
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 183 CPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQ 240
CP P CG ++ K+TCE GC FC CK+ +H + + A Q
Sbjct: 206 CPAPDCGYAVIAYGCASCPKLTCERE---GCQTEFCYHCKQIWHPNQTCDM--ARQQRAQ 260
Query: 241 AYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRLEWCW 298
RV + + +E+ KPCPRC + K +G C HM C C E+CW
Sbjct: 261 TLRVRTKHTSGLSY---GQESGPDDIKPCPRCSAYIIKMNDGSCNHMTC--AVCGCEFCW 315
Query: 299 NC 300
C
Sbjct: 316 LC 317
Score = 28.9 bits (63), Expect = 6.2
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 268 PCPRCHVPVEKNG--GCMHMKCPQPQCRLEWCWNCGCEW--NRVC 308
P P C V G C + C + C+ E+C++C W N+ C
Sbjct: 207 PAPDCGYAVIAYGCASCPKLTCEREGCQTEFCYHCKQIWHPNQTC 251
>gi|38045938 ring finger protein 144 [Homo sapiens]
Length = 292
Score = 52.8 bits (125), Expect = 4e-07
Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 48/206 (23%)
Query: 114 CFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFR------ILGEEQYNRYQ 167
C ++C L +Q+V + + L CP++ + H + ++ E RY+
Sbjct: 38 CQCIFCTLCL--KQYV-ELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYK 94
Query: 168 QYGAE-ECVLQMGGVLCPRPGCGA-------GL-LPEPDQRKVTCEGGNGLGCGFAFCRE 218
+ E E + CP C A GL P+P Q K C FC
Sbjct: 95 KLQFEREVLFDPCRTWCPASTCQAVCQLQDVGLQTPQPVQCKA---------CRMEFCST 145
Query: 219 CKEAYHEG----ECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHV 274
CK ++H G E + G T+ A++++E A K CP+C V
Sbjct: 146 CKASWHPGQGCPETMPITFLPGETSAAFKMEEDDAP---------------IKRCPKCKV 190
Query: 275 PVEKNGGCMHMKCPQPQCRLEWCWNC 300
+E++ GC M C C+ +CW C
Sbjct: 191 YIERDEGCAQMMC--KNCKHAFCWYC 214
>gi|22749145 ring finger protein 217 [Homo sapiens]
Length = 275
Score = 51.6 bits (122), Expect = 9e-07
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 211 CGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCP 270
C F +C +C +HEG + Y+ ++ W A+ E ++ + CP
Sbjct: 86 CQFVWCFKCHSPWHEG----------VNCKEYKKGDKLLRH--W-ASEIEHGQRNAQKCP 132
Query: 271 RCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWNRV-CMGDH 312
+C + +++ GC HM C QC +C+ CG + ++ GDH
Sbjct: 133 KCKIHIQRTEGCDHMTC--SQCNTNFCYRCGERYRQLRFFGDH 173
Score = 35.8 bits (81), Expect = 0.051
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 262 IKKTTKPCPRC----------HVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEWN 305
I +TKPCP+C H+P + K P C+ WC+ C W+
Sbjct: 47 IDSSTKPCPQCKHFTTFKKKGHIPTPSRSESKY-KIQCPTCQFVWCFKCHSPWH 99
>gi|5454168 RanBP-type and C3HC4-type zinc finger containing 1
isoform 1 [Homo sapiens]
Length = 468
Score = 48.1 bits (113), Expect = 1e-05
Identities = 55/237 (23%), Positives = 79/237 (33%), Gaps = 26/237 (10%)
Query: 80 IATNSRNITCITCTDVRSP---VLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGY 136
+ N+ C C V +P V++ +C H C +C L R + V P +
Sbjct: 231 LVLNTEPAECPVCYSVLAPGEAVVLREC--LHTFCREC--LQGTIRNSQEAEVSCPFIDN 286
Query: 137 SLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPE 195
+ C IK L L E Y R+ G + C P C E
Sbjct: 287 TYSCSGKLLEREIKAL-----LTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFE 341
Query: 196 PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWE 255
D + TC C C CK + + C E Q + E +
Sbjct: 342 DDVNEFTCPV-----CFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVM 396
Query: 256 AASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCW-NCGCEWNRVCMGD 311
E ++ CP+C + V+K GC ++C C E CW G W GD
Sbjct: 397 LQQGEAMR-----CPQCQIVVQKKDGCDWIRC--TVCHTEICWVTKGPRWGPGGPGD 446
>gi|144953898 RanBP-type and C3HC4-type zinc finger containing 1
isoform 2 [Homo sapiens]
Length = 510
Score = 48.1 bits (113), Expect = 1e-05
Identities = 55/237 (23%), Positives = 79/237 (33%), Gaps = 26/237 (10%)
Query: 80 IATNSRNITCITCTDVRSP---VLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGY 136
+ N+ C C V +P V++ +C H C +C L R + V P +
Sbjct: 273 LVLNTEPAECPVCYSVLAPGEAVVLREC--LHTFCREC--LQGTIRNSQEAEVSCPFIDN 328
Query: 137 SLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPE 195
+ C IK L L E Y R+ G + C P C E
Sbjct: 329 TYSCSGKLLEREIKAL-----LTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFE 383
Query: 196 PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWE 255
D + TC C C CK + + C E Q + E +
Sbjct: 384 DDVNEFTCPV-----CFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVM 438
Query: 256 AASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCW-NCGCEWNRVCMGD 311
E ++ CP+C + V+K GC ++C C E CW G W GD
Sbjct: 439 LQQGEAMR-----CPQCQIVVQKKDGCDWIRC--TVCHTEICWVTKGPRWGPGGPGD 488
>gi|46370057 ring finger protein 216 isoform b [Homo sapiens]
Length = 866
Score = 44.3 bits (103), Expect = 1e-04
Identities = 31/110 (28%), Positives = 39/110 (35%), Gaps = 25/110 (22%)
Query: 215 FCRECKEAYH---------------EGECSAVFEASGTT-----TQAYRVDERAAEQARW 254
FC+EC Y EG C+ F S T Y+ ER AE+
Sbjct: 536 FCKECLIRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVA 595
Query: 255 EAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEW 304
A + E ++ CP C P + CP P CR E C C W
Sbjct: 596 AAYADELVR-----CPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLW 640
Score = 42.4 bits (98), Expect = 5e-04
Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 23/198 (11%)
Query: 103 QCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQ 162
QC H+ C +C Y + + + S C P S ++++ IL
Sbjct: 529 QCADAHLFCKECLIRYAQEAVFGSGKLELSCMEGS--CTCSFPTSELEKVLPQTIL---- 582
Query: 163 YNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEA 222
Y Y++ EE L P C L + D ++ +C + C CR+C+
Sbjct: 583 YKYYERKAEEEVAAAYADELVRCPSCSFPALLDSDVKRFSCPNPH---CRKETCRKCQGL 639
Query: 223 YHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGC 282
+ E +G T + + E+ + R K T + K C +C + K+ GC
Sbjct: 640 WKEH--------NGLTCE--ELAEKDDIKYRTSIEEKMTAARIRK-CHKCGTGLIKSEGC 688
Query: 283 MHMKCPQPQCRLEWCWNC 300
M C +C + C+ C
Sbjct: 689 NRMSC---RCGAQMCYLC 703
>gi|46358403 ring finger protein 216 isoform a [Homo sapiens]
Length = 923
Score = 44.3 bits (103), Expect = 1e-04
Identities = 31/110 (28%), Positives = 39/110 (35%), Gaps = 25/110 (22%)
Query: 215 FCRECKEAYH---------------EGECSAVFEASGTT-----TQAYRVDERAAEQARW 254
FC+EC Y EG C+ F S T Y+ ER AE+
Sbjct: 593 FCKECLIRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVA 652
Query: 255 EAASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNCGCEW 304
A + E ++ CP C P + CP P CR E C C W
Sbjct: 653 AAYADELVR-----CPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLW 697
Score = 42.4 bits (98), Expect = 5e-04
Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 23/198 (11%)
Query: 103 QCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQ 162
QC H+ C +C Y + + + S C P S ++++ IL
Sbjct: 586 QCADAHLFCKECLIRYAQEAVFGSGKLELSCMEGS--CTCSFPTSELEKVLPQTIL---- 639
Query: 163 YNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEA 222
Y Y++ EE L P C L + D ++ +C + C CR+C+
Sbjct: 640 YKYYERKAEEEVAAAYADELVRCPSCSFPALLDSDVKRFSCPNPH---CRKETCRKCQGL 696
Query: 223 YHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGC 282
+ E +G T + + E+ + R K T + K C +C + K+ GC
Sbjct: 697 WKEH--------NGLTCE--ELAEKDDIKYRTSIEEKMTAARIRK-CHKCGTGLIKSEGC 745
Query: 283 MHMKCPQPQCRLEWCWNC 300
M C +C + C+ C
Sbjct: 746 NRMSC---RCGAQMCYLC 760
>gi|50284696 IBR domain containing 2 [Homo sapiens]
Length = 303
Score = 43.5 bits (101), Expect = 2e-04
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 211 CGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCP 270
C FC CK+A+H A + + RA EA K+ CP
Sbjct: 148 CHLKFCSCCKDAWH-----AEVSCRDSQPIVLPTEHRALFGTDAEAPIKQ--------CP 194
Query: 271 RCHVPVEKNGGCMHMKCPQPQCRLEWCWNC 300
C V +E+N GC M C C+ +CW C
Sbjct: 195 VCRVYIERNEGCAQMMC--KNCKHTFCWYC 222
>gi|67191208 ubiquitin C [Homo sapiens]
Length = 685
Score = 43.1 bits (100), Expect = 3e-04
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEF 59
M +FV+ + +EV+ +I +K + ++G+P+DQ R+IFAGK+L + T+ ++
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLSDY 211
Score = 42.4 bits (98), Expect = 5e-04
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEF 59
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ ++
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Score = 42.4 bits (98), Expect = 5e-04
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEF 59
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ ++
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 135
Score = 42.4 bits (98), Expect = 5e-04
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEF 59
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ ++
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 287
Score = 42.4 bits (98), Expect = 5e-04
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEF 59
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ ++
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 363
Score = 42.4 bits (98), Expect = 5e-04
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEF 59
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ ++
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 439
Score = 42.4 bits (98), Expect = 5e-04
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEF 59
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ ++
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 515
Score = 42.4 bits (98), Expect = 5e-04
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEF 59
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ ++
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 591
Score = 42.4 bits (98), Expect = 5e-04
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEF 59
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ ++
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 667
>gi|11024714 ubiquitin B precursor [Homo sapiens]
Length = 229
Score = 42.4 bits (98), Expect = 5e-04
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEF 59
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ ++
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Score = 42.4 bits (98), Expect = 5e-04
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEF 59
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ ++
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 135
Score = 42.4 bits (98), Expect = 5e-04
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEF 59
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ ++
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 211
>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 42.4 bits (98), Expect = 5e-04
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEF 59
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ ++
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 42.4 bits (98), Expect = 5e-04
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEF 59
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ ++
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
>gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 42.4 bits (98), Expect = 5e-04
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEF 59
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ ++
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
>gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 42.4 bits (98), Expect = 5e-04
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQEF 59
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ ++
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
>gi|109150431 ring finger protein 31 [Homo sapiens]
Length = 1072
Score = 40.8 bits (94), Expect = 0.002
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 15/114 (13%)
Query: 188 CGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDER 247
C G + E +Q + TC C FC CK + E + G + + ++ +R
Sbjct: 802 CSFGFIYEREQLEATCPQ-----CHQTFCVRCKRQWEE-------QHRGRSCEDFQNWKR 849
Query: 248 AAEQARWEAASKETIKKTTKPCPRCHVPVE-KNGGCMHMKCPQPQCRLEWCWNC 300
+ +++ CP+C GGCMH C QCR ++C C
Sbjct: 850 MNDPEYQAQGLAMYLQENGIDCPKCKFSYALARGGCMHFHC--TQCRHQFCSGC 901
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.138 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,290,363
Number of Sequences: 37866
Number of extensions: 716178
Number of successful extensions: 2786
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2639
Number of HSP's gapped (non-prelim): 125
length of query: 316
length of database: 18,247,518
effective HSP length: 102
effective length of query: 214
effective length of database: 14,385,186
effective search space: 3078429804
effective search space used: 3078429804
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.