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Search of human proteins with 169218008
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169218008 PREDICTED: similar to anaphase-promoting complex
subunit 2 [Homo sapiens]
(430 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169218008 PREDICTED: similar to anaphase-promoting complex su... 863 0.0
gi|7019327 anaphase-promoting complex subunit 2 [Homo sapiens] 758 0.0
gi|57165424 cullin 4A isoform 1 [Homo sapiens] 40 0.003
gi|11140811 cullin 4A isoform 2 [Homo sapiens] 40 0.003
gi|32307161 cullin 1 [Homo sapiens] 39 0.007
gi|4503165 cullin 3 [Homo sapiens] 36 0.059
gi|121114302 cullin 4B isoform 2 [Homo sapiens] 34 0.22
gi|121114298 cullin 4B isoform 1 [Homo sapiens] 34 0.22
gi|19482174 cullin 2 [Homo sapiens] 33 0.50
gi|224994189 prominin 1 isoform 2 [Homo sapiens] 32 1.1
gi|224994199 prominin 1 isoform 4 [Homo sapiens] 32 1.1
gi|224994197 prominin 1 isoform 5 [Homo sapiens] 32 1.1
gi|224994195 prominin 1 isoform 6 [Homo sapiens] 32 1.1
gi|224994193 prominin 1 isoform 7 [Homo sapiens] 32 1.1
gi|224994191 prominin 1 isoform 2 [Homo sapiens] 32 1.1
gi|5174387 prominin 1 isoform 1 [Homo sapiens] 32 1.1
gi|38569398 integrin, alpha 10 precursor [Homo sapiens] 32 1.1
gi|157384971 cyclin G associated kinase [Homo sapiens] 31 2.5
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 31 2.5
gi|188219577 ring finger protein 19B isoform a [Homo sapiens] 31 2.5
gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens] 30 3.2
gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens] 30 3.2
gi|24429572 TBP-associated factor RNA polymerase 1-like [Homo sa... 30 3.2
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 30 4.2
gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens] 30 4.2
gi|42542392 CCAAT/enhancer binding protein zeta [Homo sapiens] 30 5.5
gi|29540566 armadillo repeat containing, X-linked 3 [Homo sapiens] 30 5.5
gi|29540564 armadillo repeat containing, X-linked 3 [Homo sapiens] 30 5.5
gi|7705274 armadillo repeat containing, X-linked 3 [Homo sapiens] 30 5.5
gi|21361086 tumor necrosis factor receptor superfamily, member 1... 29 7.2
>gi|169218008 PREDICTED: similar to anaphase-promoting complex
subunit 2 [Homo sapiens]
Length = 430
Score = 863 bits (2229), Expect = 0.0
Identities = 430/430 (100%), Positives = 430/430 (100%)
Query: 1 MGKASVPTWIEASWAGTAEPGSALHRLSLLERVSAEAVTTTLHQVTRERMEDRCRGEYER 60
MGKASVPTWIEASWAGTAEPGSALHRLSLLERVSAEAVTTTLHQVTRERMEDRCRGEYER
Sbjct: 1 MGKASVPTWIEASWAGTAEPGSALHRLSLLERVSAEAVTTTLHQVTRERMEDRCRGEYER 60
Query: 61 SFLREFHKWIERVVGWLGKVFLQDGPARPASPEAGNTLRRWRCHVQRFFYRIYASLRIEE 120
SFLREFHKWIERVVGWLGKVFLQDGPARPASPEAGNTLRRWRCHVQRFFYRIYASLRIEE
Sbjct: 61 SFLREFHKWIERVVGWLGKVFLQDGPARPASPEAGNTLRRWRCHVQRFFYRIYASLRIEE 120
Query: 121 LFSIVRDSRPAIEDLKYCLERTDQRQQLLVSLKAALETRLLHPGVNTCDIITLYISAIKA 180
LFSIVRDSRPAIEDLKYCLERTDQRQQLLVSLKAALETRLLHPGVNTCDIITLYISAIKA
Sbjct: 121 LFSIVRDSRPAIEDLKYCLERTDQRQQLLVSLKAALETRLLHPGVNTCDIITLYISAIKA 180
Query: 181 LRVLDPSMVILEVACEPIRRYLRTREDTVRQIVAGLTGDSDGTGDLAVELSKTDPASLET 240
LRVLDPSMVILEVACEPIRRYLRTREDTVRQIVAGLTGDSDGTGDLAVELSKTDPASLET
Sbjct: 181 LRVLDPSMVILEVACEPIRRYLRTREDTVRQIVAGLTGDSDGTGDLAVELSKTDPASLET 240
Query: 241 GQDSEDDSGEPEDWVPDPVDADPGKSSSKRRSSDIISLLVSIYGSKDLFINEYRSLLADR 300
GQDSEDDSGEPEDWVPDPVDADPGKSSSKRRSSDIISLLVSIYGSKDLFINEYRSLLADR
Sbjct: 241 GQDSEDDSGEPEDWVPDPVDADPGKSSSKRRSSDIISLLVSIYGSKDLFINEYRSLLADR 300
Query: 301 LLHQFSFSPEREIRNVELLKLRFGEAPMHFCEVMLKDMADSRRINANIREEDEKRPAEEQ 360
LLHQFSFSPEREIRNVELLKLRFGEAPMHFCEVMLKDMADSRRINANIREEDEKRPAEEQ
Sbjct: 301 LLHQFSFSPEREIRNVELLKLRFGEAPMHFCEVMLKDMADSRRINANIREEDEKRPAEEQ 360
Query: 361 PPFGVYAVILSSEFWPPFKDEKLEVPEDIRAALEAYCKKYEQLKAPVVLEDRGYGSVVGV 420
PPFGVYAVILSSEFWPPFKDEKLEVPEDIRAALEAYCKKYEQLKAPVVLEDRGYGSVVGV
Sbjct: 361 PPFGVYAVILSSEFWPPFKDEKLEVPEDIRAALEAYCKKYEQLKAPVVLEDRGYGSVVGV 420
Query: 421 GGEQMWGVEE 430
GGEQMWGVEE
Sbjct: 421 GGEQMWGVEE 430
>gi|7019327 anaphase-promoting complex subunit 2 [Homo sapiens]
Length = 822
Score = 758 bits (1957), Expect = 0.0
Identities = 382/385 (99%), Positives = 382/385 (99%), Gaps = 3/385 (0%)
Query: 24 LHRLSLLERVSAEAVTTTLHQVTRERMEDRCRGEYERSFLREFHKWIERVVGWLGKVFLQ 83
LHRLSLLERVSAEAVTTTLHQVTRERMEDRCRGEYERSFLREFHKWIERVVGWLGKVFLQ
Sbjct: 247 LHRLSLLERVSAEAVTTTLHQVTRERMEDRCRGEYERSFLREFHKWIERVVGWLGKVFLQ 306
Query: 84 DGPARPASPEAGNTLRRWRCHVQRFFYRIYASLRIEELFSIVRD---SRPAIEDLKYCLE 140
DGPARPASPEAGNTLRRWRCHVQRFFYRIYASLRIEELFSIVRD SRPAIEDLKYCLE
Sbjct: 307 DGPARPASPEAGNTLRRWRCHVQRFFYRIYASLRIEELFSIVRDFPDSRPAIEDLKYCLE 366
Query: 141 RTDQRQQLLVSLKAALETRLLHPGVNTCDIITLYISAIKALRVLDPSMVILEVACEPIRR 200
RTDQRQQLLVSLKAALETRLLHPGVNTCDIITLYISAIKALRVLDPSMVILEVACEPIRR
Sbjct: 367 RTDQRQQLLVSLKAALETRLLHPGVNTCDIITLYISAIKALRVLDPSMVILEVACEPIRR 426
Query: 201 YLRTREDTVRQIVAGLTGDSDGTGDLAVELSKTDPASLETGQDSEDDSGEPEDWVPDPVD 260
YLRTREDTVRQIVAGLTGDSDGTGDLAVELSKTDPASLETGQDSEDDSGEPEDWVPDPVD
Sbjct: 427 YLRTREDTVRQIVAGLTGDSDGTGDLAVELSKTDPASLETGQDSEDDSGEPEDWVPDPVD 486
Query: 261 ADPGKSSSKRRSSDIISLLVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREIRNVELLK 320
ADPGKSSSKRRSSDIISLLVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREIRNVELLK
Sbjct: 487 ADPGKSSSKRRSSDIISLLVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREIRNVELLK 546
Query: 321 LRFGEAPMHFCEVMLKDMADSRRINANIREEDEKRPAEEQPPFGVYAVILSSEFWPPFKD 380
LRFGEAPMHFCEVMLKDMADSRRINANIREEDEKRPAEEQPPFGVYAVILSSEFWPPFKD
Sbjct: 547 LRFGEAPMHFCEVMLKDMADSRRINANIREEDEKRPAEEQPPFGVYAVILSSEFWPPFKD 606
Query: 381 EKLEVPEDIRAALEAYCKKYEQLKA 405
EKLEVPEDIRAALEAYCKKYEQLKA
Sbjct: 607 EKLEVPEDIRAALEAYCKKYEQLKA 631
>gi|57165424 cullin 4A isoform 1 [Homo sapiens]
Length = 759
Score = 40.4 bits (93), Expect = 0.003
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 271 RSSDIISLLVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREIRNVELLKLRFGEAPMHF 330
R+ D I +L KD+F Y+ LA RLL S S + E + LK G A
Sbjct: 431 RTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSK 490
Query: 331 CEVMLKDMADSRRINANIREEDEKRPAEEQPPFGVYAVILSSEFWPPFKDEKLEV-PEDI 389
E M KDM S+ I + ++ + + + P + IL+ +WP + ++ + PE I
Sbjct: 491 LEGMFKDMELSKDIMVHFKQHMQNQ--SDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMI 548
Query: 390 R 390
+
Sbjct: 549 K 549
>gi|11140811 cullin 4A isoform 2 [Homo sapiens]
Length = 659
Score = 40.4 bits (93), Expect = 0.003
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 271 RSSDIISLLVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREIRNVELLKLRFGEAPMHF 330
R+ D I +L KD+F Y+ LA RLL S S + E + LK G A
Sbjct: 331 RTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSK 390
Query: 331 CEVMLKDMADSRRINANIREEDEKRPAEEQPPFGVYAVILSSEFWPPFKDEKLEV-PEDI 389
E M KDM S+ I + ++ + + + P + IL+ +WP + ++ + PE I
Sbjct: 391 LEGMFKDMELSKDIMVHFKQHMQNQ--SDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMI 448
Query: 390 R 390
+
Sbjct: 449 K 449
>gi|32307161 cullin 1 [Homo sapiens]
Length = 776
Score = 39.3 bits (90), Expect = 0.007
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 286 KDLFINEYRSLLADRLLHQFSFSPEREIRNVELLKLRFGEAPMHFCEVMLKDMADSRRIN 345
KD+F Y +LA RL+HQ S S + E + LK G + M +D+ S+ +N
Sbjct: 459 KDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLN 518
Query: 346 ANIREEDEKRPAEEQPPFGVYAV-ILSSEFWPPFKDEKLEVPEDIRAALEAYCKKY 400
E+ +K +P +++ +LSS WP + +P ++ + + + Y
Sbjct: 519 ----EQFKKHLTNSEPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFY 570
>gi|4503165 cullin 3 [Homo sapiens]
Length = 768
Score = 36.2 bits (82), Expect = 0.059
Identities = 51/178 (28%), Positives = 68/178 (38%), Gaps = 30/178 (16%)
Query: 274 DIISLLVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREIRNVELLKLRFGEAPMHFCEV 333
D +L KD+F Y+ LA RLL S S + E + LK G E
Sbjct: 413 DKAMVLFRFMQEKDVFERYYKQHLARRLLTNKSVSDDSEKNMISKLKTECGCQFTSKLEG 472
Query: 334 MLKDMADSRRINANIREEDEKRPAEEQPPFGVYAV--ILSSEFWP-PFKDEKLEVPEDIR 390
M +DM+ S N + E + A GV +L++ +WP K +P R
Sbjct: 473 MFRDMSIS---NTTMDEFRQHLQATGVSLGGVDLTVRVLTTGYWPTQSATPKCNIPPAPR 529
Query: 391 AALEAYCKKY------EQLK---------------APVVLEDRGYGSVVGVGGEQMWG 427
A E + + Y QL PV ED GS VGVGG Q+ G
Sbjct: 530 HAFEIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPVKKED---GSEVGVGGAQVTG 584
>gi|121114302 cullin 4B isoform 2 [Homo sapiens]
Length = 895
Score = 34.3 bits (77), Expect = 0.22
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 282 IYGSKDLFINEYRSLLADRLLHQFSFSPEREIRNVELLKLRFGEAPMHFCEVMLKDMADS 341
IYG KD+F Y+ LA RLL S S + E + LK G A E M KDM S
Sbjct: 579 IYG-KDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELS 637
Query: 342 RRINANIRE--EDEKRPAEEQPPFGVYAVILSSEFWPPFKDEKLEVPEDI 389
+ I ++ +++ P + + IL+ +WP + ++ +P ++
Sbjct: 638 KDIMIQFKQYMQNQNVPGNIE----LTVNILTMGYWPTYVPMEVHLPPEM 683
>gi|121114298 cullin 4B isoform 1 [Homo sapiens]
Length = 913
Score = 34.3 bits (77), Expect = 0.22
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 282 IYGSKDLFINEYRSLLADRLLHQFSFSPEREIRNVELLKLRFGEAPMHFCEVMLKDMADS 341
IYG KD+F Y+ LA RLL S S + E + LK G A E M KDM S
Sbjct: 597 IYG-KDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELS 655
Query: 342 RRINANIRE--EDEKRPAEEQPPFGVYAVILSSEFWPPFKDEKLEVPEDI 389
+ I ++ +++ P + + IL+ +WP + ++ +P ++
Sbjct: 656 KDIMIQFKQYMQNQNVPGNIE----LTVNILTMGYWPTYVPMEVHLPPEM 701
>gi|19482174 cullin 2 [Homo sapiens]
Length = 745
Score = 33.1 bits (74), Expect = 0.50
Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 5/143 (3%)
Query: 265 KSSSKRRSSDIISLLVSIY---GSKDLFINEYRSLLADRLLHQFSFSPEREIRNVELLKL 321
K ++ D ++ ++++ KD+F Y +LA RL+H S S + E + LK
Sbjct: 404 KGMTENEVEDRLTSFITVFKYIDDKDVFQKFYARMLAKRLIHGLSMSMDSEEAMINKLKQ 463
Query: 322 RFGEAPMHFCEVMLKDMADSRRINANIREEDEKRPAEEQPPFGVYAVILSSEFWP--PFK 379
G M DM+ S +N + + +L + WP
Sbjct: 464 ACGYEFTSKLHRMYTDMSVSADLNNKFNNFIKNQDTVIDLGISFQIYVLQAGAWPLTQAP 523
Query: 380 DEKLEVPEDIRAALEAYCKKYEQ 402
+P+++ +++ + Y Q
Sbjct: 524 SSTFAIPQELEKSVQMFELFYSQ 546
>gi|224994189 prominin 1 isoform 2 [Homo sapiens]
Length = 856
Score = 32.0 bits (71), Expect = 1.1
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 17/107 (15%)
Query: 118 IEELFSIVRDSRPAIEDLKYCL----ERTDQRQQLLVSLKAALETRL------LHPGVNT 167
I+ + + +++++ A+E++ L +++ Q L S+K +L + L +HP T
Sbjct: 247 IKSMATAIKETKEALENMNSTLKSLHQQSTQLSSSLTSVKTSLRSSLNDPLCLVHPSSET 306
Query: 168 CDIITLYISAIKA---LRVLDPSMVILEVACEPIRRYLRTREDTVRQ 211
C+ I L +S + + LR L P ++ + + LRT D + Q
Sbjct: 307 CNSIRLSLSQLNSNPELRQLPP----VDAELDNVNNVLRTDLDGLVQ 349
>gi|224994199 prominin 1 isoform 4 [Homo sapiens]
Length = 825
Score = 32.0 bits (71), Expect = 1.1
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 17/107 (15%)
Query: 118 IEELFSIVRDSRPAIEDLKYCL----ERTDQRQQLLVSLKAALETRL------LHPGVNT 167
I+ + + +++++ A+E++ L +++ Q L S+K +L + L +HP T
Sbjct: 247 IKSMATAIKETKEALENMNSTLKSLHQQSTQLSSSLTSVKTSLRSSLNDPLCLVHPSSET 306
Query: 168 CDIITLYISAIKA---LRVLDPSMVILEVACEPIRRYLRTREDTVRQ 211
C+ I L +S + + LR L P ++ + + LRT D + Q
Sbjct: 307 CNSIRLSLSQLNSNPELRQLPP----VDAELDNVNNVLRTDLDGLVQ 349
>gi|224994197 prominin 1 isoform 5 [Homo sapiens]
Length = 833
Score = 32.0 bits (71), Expect = 1.1
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 17/107 (15%)
Query: 118 IEELFSIVRDSRPAIEDLKYCL----ERTDQRQQLLVSLKAALETRL------LHPGVNT 167
I+ + + +++++ A+E++ L +++ Q L S+K +L + L +HP T
Sbjct: 247 IKSMATAIKETKEALENMNSTLKSLHQQSTQLSSSLTSVKTSLRSSLNDPLCLVHPSSET 306
Query: 168 CDIITLYISAIKA---LRVLDPSMVILEVACEPIRRYLRTREDTVRQ 211
C+ I L +S + + LR L P ++ + + LRT D + Q
Sbjct: 307 CNSIRLSLSQLNSNPELRQLPP----VDAELDNVNNVLRTDLDGLVQ 349
>gi|224994195 prominin 1 isoform 6 [Homo sapiens]
Length = 834
Score = 32.0 bits (71), Expect = 1.1
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 17/107 (15%)
Query: 118 IEELFSIVRDSRPAIEDLKYCL----ERTDQRQQLLVSLKAALETRL------LHPGVNT 167
I+ + + +++++ A+E++ L +++ Q L S+K +L + L +HP T
Sbjct: 256 IKSMATAIKETKEALENMNSTLKSLHQQSTQLSSSLTSVKTSLRSSLNDPLCLVHPSSET 315
Query: 168 CDIITLYISAIKA---LRVLDPSMVILEVACEPIRRYLRTREDTVRQ 211
C+ I L +S + + LR L P ++ + + LRT D + Q
Sbjct: 316 CNSIRLSLSQLNSNPELRQLPP----VDAELDNVNNVLRTDLDGLVQ 358
>gi|224994193 prominin 1 isoform 7 [Homo sapiens]
Length = 842
Score = 32.0 bits (71), Expect = 1.1
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 17/107 (15%)
Query: 118 IEELFSIVRDSRPAIEDLKYCL----ERTDQRQQLLVSLKAALETRL------LHPGVNT 167
I+ + + +++++ A+E++ L +++ Q L S+K +L + L +HP T
Sbjct: 256 IKSMATAIKETKEALENMNSTLKSLHQQSTQLSSSLTSVKTSLRSSLNDPLCLVHPSSET 315
Query: 168 CDIITLYISAIKA---LRVLDPSMVILEVACEPIRRYLRTREDTVRQ 211
C+ I L +S + + LR L P ++ + + LRT D + Q
Sbjct: 316 CNSIRLSLSQLNSNPELRQLPP----VDAELDNVNNVLRTDLDGLVQ 358
>gi|224994191 prominin 1 isoform 2 [Homo sapiens]
Length = 856
Score = 32.0 bits (71), Expect = 1.1
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 17/107 (15%)
Query: 118 IEELFSIVRDSRPAIEDLKYCL----ERTDQRQQLLVSLKAALETRL------LHPGVNT 167
I+ + + +++++ A+E++ L +++ Q L S+K +L + L +HP T
Sbjct: 247 IKSMATAIKETKEALENMNSTLKSLHQQSTQLSSSLTSVKTSLRSSLNDPLCLVHPSSET 306
Query: 168 CDIITLYISAIKA---LRVLDPSMVILEVACEPIRRYLRTREDTVRQ 211
C+ I L +S + + LR L P ++ + + LRT D + Q
Sbjct: 307 CNSIRLSLSQLNSNPELRQLPP----VDAELDNVNNVLRTDLDGLVQ 349
>gi|5174387 prominin 1 isoform 1 [Homo sapiens]
Length = 865
Score = 32.0 bits (71), Expect = 1.1
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 17/107 (15%)
Query: 118 IEELFSIVRDSRPAIEDLKYCL----ERTDQRQQLLVSLKAALETRL------LHPGVNT 167
I+ + + +++++ A+E++ L +++ Q L S+K +L + L +HP T
Sbjct: 256 IKSMATAIKETKEALENMNSTLKSLHQQSTQLSSSLTSVKTSLRSSLNDPLCLVHPSSET 315
Query: 168 CDIITLYISAIKA---LRVLDPSMVILEVACEPIRRYLRTREDTVRQ 211
C+ I L +S + + LR L P ++ + + LRT D + Q
Sbjct: 316 CNSIRLSLSQLNSNPELRQLPP----VDAELDNVNNVLRTDLDGLVQ 358
>gi|38569398 integrin, alpha 10 precursor [Homo sapiens]
Length = 1167
Score = 32.0 bits (71), Expect = 1.1
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Query: 193 VACEPIRRYLRTREDTVRQIVAGLTGDSDGTGDLAVELSKTDPASLETGQDSEDDSGEPE 252
V CE + ++ D +R + +T D T L++ P S++ D G
Sbjct: 734 VTCEQLHFHVLDTSDYLRPVALTVTFALDNTTKPGPVLNEGSPTSIQKLVPFSKDCGPDN 793
Query: 253 DWVPDPVDADPGKSSSKRRSSDII-----SLLVS--IYGSKDLFINEYRSLLADRLLHQF 305
+ V D V R++ ++ +LVS + K+ N SL+ R LH
Sbjct: 794 ECVTDLVLQVNMDIRGSRKAPFVVRGGRRKVLVSTTLENRKENAYNTSLSLIFSRNLHLA 853
Query: 306 SFSPERE 312
S +P+RE
Sbjct: 854 SLTPQRE 860
>gi|157384971 cyclin G associated kinase [Homo sapiens]
Length = 1311
Score = 30.8 bits (68), Expect = 2.5
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 278 LLVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREIRNVELLKLRFGEAPMHFCEVMLKD 337
+L+ IY ++ ++ +A + Q F RN +K F + + C++ K
Sbjct: 640 VLIVIYHARSTLGGRLQAKMASMKMFQIQFHTGFVPRNATTVK--FAKYDLDACDIQEK- 696
Query: 338 MADSRRINANIREEDEKRPAEEQPPF 363
D ++N + E RP+ E PP+
Sbjct: 697 YPDLFQVNLEVEVEPRDRPSREAPPW 722
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 30.8 bits (68), Expect = 2.5
Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 43/168 (25%)
Query: 229 ELSKTDPASLETGQDSEDDSGEPEDWVPDPVDADPGKSSSKRRSSDIISLLVSIYGSKDL 288
E K DP + G D S DPGK ++ R + G DL
Sbjct: 1539 EKEKGDPVKMSNGNDKVAPS------------KDPGKKDARPREK--------LLGDGDL 1578
Query: 289 FINEYRSLLA--DRLLHQFSFSPEREIRNVELLKLRFGEAPMHFCEVMLKDMADSRRINA 346
+ + +L+ D + + + ++ +E L+ R G+ + + K D R+
Sbjct: 1579 MMTSFERMLSQKDLEIEERHKRHKERMKQMEKLRHRSGDPKL---KEKAKPADDGRKKGL 1635
Query: 347 NIREEDEKRPAEEQPPFGVYAVILSSEFWPPFKDEKLEVPEDIRAALE 394
+I PA++ P PPFKD+KL+ I A E
Sbjct: 1636 DI-------PAKKPPGLD-----------PPFKDKKLKESTPIPPAAE 1665
>gi|188219577 ring finger protein 19B isoform a [Homo sapiens]
Length = 732
Score = 30.8 bits (68), Expect = 2.5
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 306 SFSPE-REIRNVELLKLRFGEAPMHFCEVMLKDMADSRRINANIREEDEKRP----AEEQ 360
S++P+ RE N+E+ ++ P H+ V DS ++A + E +E+ +EE
Sbjct: 576 SYNPQDRECNNMEI-QVDIEAKPSHYQLVSGSSTEDSLHVHAQMAENEEEGSGGGGSEED 634
Query: 361 PPFGVYAV----ILSSEFWPPFKDEKLEVPEDIRAALEA 395
PP + L+S+ W D L PE IR+ LE+
Sbjct: 635 PPCRHQSCEQKDCLASKPW----DISLAQPESIRSDLES 669
>gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens]
Length = 1872
Score = 30.4 bits (67), Expect = 3.2
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 370 LSSEFWPPFKDEKLEVPEDIRAAL--EAYCKKYEQLKAPVVLEDRGYG 415
+ S +W D +L E+IRA + E C Y + A L+D GYG
Sbjct: 857 MDSNWWVLKSDFRLPTEEEIRAMVSPEQCCAYYSMIAAEQRLKDAGYG 904
>gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens]
Length = 1893
Score = 30.4 bits (67), Expect = 3.2
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 370 LSSEFWPPFKDEKLEVPEDIRAAL--EAYCKKYEQLKAPVVLEDRGYG 415
+ S +W D +L E+IRA + E C Y + A L+D GYG
Sbjct: 878 MDSNWWVLKSDFRLPTEEEIRAMVSPEQCCAYYSMIAAEQRLKDAGYG 925
>gi|24429572 TBP-associated factor RNA polymerase 1-like [Homo
sapiens]
Length = 1826
Score = 30.4 bits (67), Expect = 3.2
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 370 LSSEFWPPFKDEKLEVPEDIRAAL--EAYCKKYEQLKAPVVLEDRGYG 415
+ S +W D +L E+IRA + E C Y + A L+D GYG
Sbjct: 876 MDSNWWVLKSDFRLPTEEEIRAKVSPEQCCAYYSMIAAKQRLKDAGYG 923
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 30.0 bits (66), Expect = 4.2
Identities = 41/175 (23%), Positives = 68/175 (38%), Gaps = 19/175 (10%)
Query: 117 RIEELFSIVRDSRPAIEDLKYCLERTDQRQQLLVSLKAA-LETRLLHPGV-NTCDIITLY 174
RI+ + I R K L+R + Q + +AA L+ R + V N I
Sbjct: 354 RIKPVRIIPSSKRTDATIAKQLLQRAKKGAQKKIEKEAAQLQGRKVKTQVKNIRQFIMPV 413
Query: 175 ISAIKALRVLDPSMVILEVACEPIRRYLRTREDTVRQIVAGLTGDSDGTG-------DLA 227
+SAI + + P I + +P + R + A G S+ + ++
Sbjct: 414 VSAISSRIIKTPRRFIEDEDYDPPIKIARLESTPNSRFSAPSCGSSEKSSAASQHSSQMS 473
Query: 228 VELSKTDPASLETGQDS----------EDDSGEPEDWVPDPVDADPGKSSSKRRS 272
+ S++ S++T DS E+ S PE P P+ P S+ RRS
Sbjct: 474 SDSSRSSSPSVDTSTDSQASEEIQVLPEERSDTPEVHPPLPISQSPENESNDRRS 528
>gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]
Length = 1352
Score = 30.0 bits (66), Expect = 4.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 324 GEAPMHFCEVMLKDMADSRRINANIREEDEKRPAE 358
G AP+ E + KD +D+RR+N+++ + K A+
Sbjct: 938 GRAPLAVMEGVFKDESDTRRLNSSVVDTQSKHSAQ 972
>gi|42542392 CCAAT/enhancer binding protein zeta [Homo sapiens]
Length = 1054
Score = 29.6 bits (65), Expect = 5.5
Identities = 31/166 (18%), Positives = 73/166 (43%), Gaps = 15/166 (9%)
Query: 117 RIEELFSIVR--DSRPAIEDLKYCLERTDQRQQLLVSLKAALETRLLHPGVNTCDIITLY 174
+I+ LF ++ + +++ L + + +Q + AL ++L PG+ TC ++
Sbjct: 507 QIDTLFKVLHIVNFNTSVQALMLLFQVMNSQQTISDRYYTALYRKMLDPGLMTCSKQAMF 566
Query: 175 ISAI-KALRVLDPSMVILEVACEPIRRYLRTREDTVRQIVAGLTGDSDGTGDLAVELSKT 233
++ + K+L+ + ++L ++R L+ + + G L E+ K
Sbjct: 567 LNLVYKSLK----ADIVLRRVKAFVKRLLQVTCQQMPPFICGAL-------YLVSEILKA 615
Query: 234 DPASLETGQDSEDDSGEPEDWVPDPVDADPGKSSSKRRSSDIISLL 279
P L + D +S + E+++ D D K + + ++I+ L
Sbjct: 616 KP-GLRSQLDDHPESDDEENFIDANDDEDMEKFTDADKETEIVKKL 660
>gi|29540566 armadillo repeat containing, X-linked 3 [Homo sapiens]
Length = 379
Score = 29.6 bits (65), Expect = 5.5
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 188 MVILEVACEPIRRYLRTREDTVRQIVAGLTGDSDGTGDLAVELSKTDPASLETGQDSEDD 247
+VI AC I R R R+ ++ G +GD D GD + A D +DD
Sbjct: 14 LVIGAGACYCIYRLTRGRKQNKEKMAEGGSGDVDDAGDCS-------GARYNDWSDDDDD 66
Query: 248 SGEPED--WVP 256
S E + W P
Sbjct: 67 SNESKSIVWYP 77
>gi|29540564 armadillo repeat containing, X-linked 3 [Homo sapiens]
Length = 379
Score = 29.6 bits (65), Expect = 5.5
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 188 MVILEVACEPIRRYLRTREDTVRQIVAGLTGDSDGTGDLAVELSKTDPASLETGQDSEDD 247
+VI AC I R R R+ ++ G +GD D GD + A D +DD
Sbjct: 14 LVIGAGACYCIYRLTRGRKQNKEKMAEGGSGDVDDAGDCS-------GARYNDWSDDDDD 66
Query: 248 SGEPED--WVP 256
S E + W P
Sbjct: 67 SNESKSIVWYP 77
>gi|7705274 armadillo repeat containing, X-linked 3 [Homo sapiens]
Length = 379
Score = 29.6 bits (65), Expect = 5.5
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 188 MVILEVACEPIRRYLRTREDTVRQIVAGLTGDSDGTGDLAVELSKTDPASLETGQDSEDD 247
+VI AC I R R R+ ++ G +GD D GD + A D +DD
Sbjct: 14 LVIGAGACYCIYRLTRGRKQNKEKMAEGGSGDVDDAGDCS-------GARYNDWSDDDDD 66
Query: 248 SGEPED--WVP 256
S E + W P
Sbjct: 67 SNESKSIVWYP 77
>gi|21361086 tumor necrosis factor receptor superfamily, member 10a
[Homo sapiens]
Length = 468
Score = 29.3 bits (64), Expect = 7.2
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 10 IEASWAGTAEPGSALHRLSLLERVSAEAVTTTLHQV--TRERMEDRCRGEYERSFLREFH 67
I+ AGTA PG AL+ + L++ V+ ++H + ERME+R E + L +
Sbjct: 394 IDVVRAGTAGPGDALYAM-LMKWVNKTGRNASIHTLLDALERMEERHAKEKIQDLLVDSG 452
Query: 68 KWIERVVGWLGKVFLQDGPARPASPE 93
K+I +L+DG S E
Sbjct: 453 KFI----------YLEDGTGSAVSLE 468
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,137,167
Number of Sequences: 37866
Number of extensions: 768002
Number of successful extensions: 2624
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2599
Number of HSP's gapped (non-prelim): 59
length of query: 430
length of database: 18,247,518
effective HSP length: 105
effective length of query: 325
effective length of database: 14,271,588
effective search space: 4638266100
effective search space used: 4638266100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.