Guide to the Human Genome
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Name: PROM1 Sequence: fasta or formatted (865aa) NCBI GI: 5174387
Description:

prominin 1 isoform 1

Referenced in:

Hematopoiesis and Erythrocytes

Other entries for this name:
alt prot [856aa] prominin 1 isoform 2
alt prot [856aa] prominin 1 isoform 2
alt prot [842aa] prominin 1 isoform 7
alt prot [834aa] prominin 1 isoform 6
alt prot [833aa] prominin 1 isoform 5
alt prot [825aa] prominin 1 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         40           2
 C cysteine            2.5         22           2
 D aspartate           4.7         41           2
 E glutamate           4.9         42           2
 F phenylalanine       4.3         37           2
 G glycine             6.1         53           3
 H histidine           2.0         17           1
 I isoleucine          7.4         64           3
 K lysine              5.3         46           2
 L leucine            12.9        112           4
 M methionine          1.6         14           1
 N asparagine          6.2         54           2
 P proline             3.8         33           2
 Q glutamine           3.9         34           2
 R arginine            4.2         36           2
 S serine              7.9         68           3
 T threonine           6.0         52           3
 V valine              6.4         55           2
 W tryptophan          0.8          7           2
 Y tyrosine            4.4         38           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prominin 1 isoform 1 
PROM1                 0.986   prominin 1 isoform 2 
PROM1                 0.986   prominin 1 isoform 2 
PROM1                 0.964   prominin 1 isoform 7 
PROM1                 0.956   prominin 1 isoform 6 
PROM1                 0.950   prominin 1 isoform 5 
PROM1                 0.941   prominin 1 isoform 4 
PROM2                 0.192   prominin 2 
SYCP1                 0.012   synaptonemal complex protein 1 
MMRN1                 0.010   multimerin 1 
KIF15                 0.008   kinesin family member 15 
KIAA0494              0.008   hypothetical protein LOC9813 
OLFM1                 0.008   olfactomedin related ER localized protein isoform 1 ...
CCPG1                 0.007   cell cycle progression 1 isoform 2 
CCPG1                 0.007   cell cycle progression 1 isoform 1 
GJB4                  0.006   gap junction protein, beta 4 
FAM13B                0.006   hypothetical protein LOC51306 isoform 1 
CENPF                 0.006   centromere protein F 
RAD50                 0.006   RAD50 homolog isoform 2 
RAD50                 0.006   RAD50 homolog isoform 1 
KRT35                 0.006   keratin 35 
FAM13B                0.005   hypothetical protein LOC51306 isoform 3 
FAM13B                0.005   hypothetical protein LOC51306 isoform 2 
TTYH2                 0.005   tweety 2 isoform 1 
GOLGB1                0.005   golgi autoantigen, golgin subfamily b, macrogolgin ...
GCC2                  0.004   GRIP and coiled-coil domain-containing 2 
LOC650621             0.004   PREDICTED: similar to anaphase-promoting complex su...
MYH11                 0.004   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.004   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.004   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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