Guide to the Human Genome
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Name: LOC650621 Sequence: fasta or formatted (430aa) NCBI GI: 169218008
Description:

PREDICTED: similar to anaphase-promoting complex subunit 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         31           2
 C cysteine            1.6          7           1
 D aspartate           6.5         28           2
 E glutamate          10.5         45           2
 F phenylalanine       3.3         14           2
 G glycine             5.8         25           2
 H histidine           1.6          7           1
 I isoleucine          5.1         22           2
 K lysine              4.2         18           2
 L leucine            10.2         44           2
 M methionine          1.6          7           1
 N asparagine          1.4          6           1
 P proline             5.3         23           2
 Q glutamine           2.8         12           2
 R arginine            9.3         40           2
 S serine              7.7         33           3
 T threonine           4.0         17           3
 V valine              7.2         31           2
 W tryptophan          1.9          8           1
 Y tyrosine            2.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to anaphase-promoting complex su... 
ANAPC2                0.875   anaphase-promoting complex subunit 2 
CUL4A                 0.018   cullin 4A isoform 1 
CUL4A                 0.018   cullin 4A isoform 2 
CUL1                  0.017   cullin 1 
CUL3                  0.013   cullin 3 
CUL4B                 0.011   cullin 4B isoform 2 
CUL4B                 0.011   cullin 4B isoform 1 
CUL2                  0.010   cullin 2 
PROM1                 0.008   prominin 1 isoform 2 
PROM1                 0.008   prominin 1 isoform 4 
PROM1                 0.008   prominin 1 isoform 5 
PROM1                 0.008   prominin 1 isoform 6 
PROM1                 0.008   prominin 1 isoform 7 
PROM1                 0.008   prominin 1 isoform 2 
PROM1                 0.008   prominin 1 isoform 1 
ITGA10                0.008   integrin, alpha 10 precursor 
GAK                   0.007   cyclin G associated kinase 
ANKRD11               0.007   ankyrin repeat domain 11 
RNF19B                0.007   ring finger protein 19B isoform a 
TAF1                  0.006   TBP-associated factor 1 isoform 2 
TAF1                  0.006   TBP-associated factor 1 isoform 1 
TAF1L                 0.006   TBP-associated factor RNA polymerase 1-like 
MLL                   0.006   myeloid/lymphoid or mixed-lineage leukemia protein [...
USP31                 0.006   ubiquitin specific peptidase 31 
CEBPZ                 0.006   CCAAT/enhancer binding protein zeta 
ARMCX3                0.006   armadillo repeat containing, X-linked 3 
ARMCX3                0.006   armadillo repeat containing, X-linked 3 
ARMCX3                0.006   armadillo repeat containing, X-linked 3 
TNFRSF10A             0.005   tumor necrosis factor receptor superfamily, member 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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