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Search of human proteins with 169217681
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169217681 PREDICTED: similar to hCG1747328, partial [Homo
sapiens]
(245 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169217681 PREDICTED: similar to hCG1747328, partial [Homo sap... 515 e-146
gi|239749213 PREDICTED: mucin 3B, cell surface associated, parti... 510 e-145
gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens] 510 e-145
gi|169170721 PREDICTED: similar to intestinal mucin [Homo sapiens] 510 e-145
gi|239754668 PREDICTED: mucin 12 [Homo sapiens] 122 3e-28
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 122 3e-28
gi|91982772 mucin 17 [Homo sapiens] 115 3e-26
gi|89026265 PREDICTED: mucin 12 [Homo sapiens] 106 2e-23
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 102 2e-22
gi|139394621 chondroitin sulfate proteoglycan 5 (neuroglycan C) ... 40 0.002
gi|167736355 mucin 4 isoform a [Homo sapiens] 39 0.005
gi|112382231 mucin 4 isoform e [Homo sapiens] 39 0.005
gi|112382233 mucin 4 isoform d [Homo sapiens] 39 0.005
gi|126012573 low density lipoprotein-related protein 2 [Homo sap... 35 0.059
gi|153070262 meprin A alpha [Homo sapiens] 33 0.17
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 33 0.17
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 33 0.17
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 33 0.17
gi|153070264 meprin A beta [Homo sapiens] 33 0.23
gi|11321571 slit homolog 3 [Homo sapiens] 32 0.39
gi|116235485 delta-notch-like EGF repeat-containing transmembran... 32 0.39
gi|57242793 interphotoreceptor matrix proteoglycan 2 [Homo sapiens] 32 0.66
gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo ... 31 1.1
gi|66346695 fibrillin 2 precursor [Homo sapiens] 30 1.5
gi|126012562 low density lipoprotein-related protein 1 [Homo sap... 30 1.9
gi|239756073 PREDICTED: hypothetical protein isoform 1 [Homo sap... 30 2.5
gi|239756071 PREDICTED: hypothetical protein isoform 2 [Homo sap... 30 2.5
gi|239750602 PREDICTED: hypothetical protein XP_002347477 isofor... 30 2.5
gi|239750600 PREDICTED: hypothetical protein XP_002347478 isofor... 30 2.5
gi|239744909 PREDICTED: hypothetical protein XP_002343293 isofor... 30 2.5
>gi|169217681 PREDICTED: similar to hCG1747328, partial [Homo
sapiens]
Length = 245
Score = 515 bits (1327), Expect = e-146
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 1 NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDVNSCQDSQTLCFKPDSIKV 60
NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDVNSCQDSQTLCFKPDSIKV
Sbjct: 1 NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDVNSCQDSQTLCFKPDSIKV 60
Query: 61 NNNSKTELTPAAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET 120
NNNSKTELTPAAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET
Sbjct: 61 NNNSKTELTPAAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET 120
Query: 121 SGPTCRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ 180
SGPTCRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ
Sbjct: 121 SGPTCRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ 180
Query: 181 RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPEM 240
RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPEM
Sbjct: 181 RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPEM 240
Query: 241 TSSSV 245
TSSSV
Sbjct: 241 TSSSV 245
>gi|239749213 PREDICTED: mucin 3B, cell surface associated, partial
[Homo sapiens]
Length = 1063
Score = 510 bits (1313), Expect = e-145
Identities = 242/245 (98%), Positives = 242/245 (98%)
Query: 1 NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDVNSCQDSQTLCFKPDSIKV 60
NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQD NSCQDSQTLCFKPDSIKV
Sbjct: 819 NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDANSCQDSQTLCFKPDSIKV 878
Query: 61 NNNSKTELTPAAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET 120
NNNSKTELTP AICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET
Sbjct: 879 NNNSKTELTPEAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET 938
Query: 121 SGPTCRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ 180
SGP CRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ
Sbjct: 939 SGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ 998
Query: 181 RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPEM 240
RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPEM
Sbjct: 999 RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPEM 1058
Query: 241 TSSSV 245
TSSSV
Sbjct: 1059 TSSSV 1063
>gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens]
Length = 1486
Score = 510 bits (1313), Expect = e-145
Identities = 242/245 (98%), Positives = 242/245 (98%)
Query: 1 NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDVNSCQDSQTLCFKPDSIKV 60
NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQD NSCQDSQTLCFKPDSIKV
Sbjct: 1242 NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDANSCQDSQTLCFKPDSIKV 1301
Query: 61 NNNSKTELTPAAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET 120
NNNSKTELTP AICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET
Sbjct: 1302 NNNSKTELTPEAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET 1361
Query: 121 SGPTCRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ 180
SGP CRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ
Sbjct: 1362 SGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ 1421
Query: 181 RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPEM 240
RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPEM
Sbjct: 1422 RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPEM 1481
Query: 241 TSSSV 245
TSSSV
Sbjct: 1482 TSSSV 1486
>gi|169170721 PREDICTED: similar to intestinal mucin [Homo sapiens]
Length = 310
Score = 510 bits (1313), Expect = e-145
Identities = 242/245 (98%), Positives = 242/245 (98%)
Query: 1 NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDVNSCQDSQTLCFKPDSIKV 60
NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQD NSCQDSQTLCFKPDSIKV
Sbjct: 66 NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDANSCQDSQTLCFKPDSIKV 125
Query: 61 NNNSKTELTPAAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET 120
NNNSKTELTP AICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET
Sbjct: 126 NNNSKTELTPEAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLET 185
Query: 121 SGPTCRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ 180
SGP CRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ
Sbjct: 186 SGPACRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGGQ 245
Query: 181 RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPEM 240
RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPEM
Sbjct: 246 RRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDTNFHVALENVDTTMKVHIKRPEM 305
Query: 241 TSSSV 245
TSSSV
Sbjct: 306 TSSSV 310
>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
Length = 1952
Score = 122 bits (306), Expect = 3e-28
Identities = 79/258 (30%), Positives = 133/258 (51%), Gaps = 20/258 (7%)
Query: 1 NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQ----DVNSCQDSQTLCFKPD 56
NGSIVV V+LE ++ + E +E + +K + N ++ D +SC+ + LC+ +
Sbjct: 1702 NGSIVVKNDVILEADYTLEYEELFENLAEIVKAKIMNETRTTLLDPDSCRKA-ILCYSEE 1760
Query: 57 SIKVNNNSKTELTPAAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQC 116
V+++ C + A GY +FY+ V +L CV KCT G + ++C+ G C
Sbjct: 1761 DTFVDSSVTPGFDFQEQCTQKAAEGYTQFYYVDVLDGKLACVNKCTKGTKSQMNCNLGTC 1820
Query: 117 VLETSGPTCRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGW 176
L+ SGP C C +T+THW+ G CE + ++LV G+ A++ +LLLAL + +
Sbjct: 1821 QLQRSGPRCLCPNTNTHWYWGETCEFNIA-KSLVYGIV--GAVMAVLLLALIILIILFSL 1877
Query: 177 WGGQRRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDT---------NFHVALENV 227
+R +D ++W + E G F +D +++ NF LE V
Sbjct: 1878 SQRKRHREQYDVPQEWRK---EGTPGIFQKTAIWEDQNLRESRFGLENAYNNFRPTLETV 1934
Query: 228 DTTMKVHIKRPEMTSSSV 245
D+ ++HI+RPEM +S+V
Sbjct: 1935 DSGTELHIQRPEMVASTV 1952
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 122 bits (306), Expect = 3e-28
Identities = 79/258 (30%), Positives = 133/258 (51%), Gaps = 20/258 (7%)
Query: 1 NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQ----DVNSCQDSQTLCFKPD 56
NGSIVV V+LE ++ + E +E + +K + N ++ D +SC+ + LC+ +
Sbjct: 5228 NGSIVVKNDVILEADYTLEYEELFENLAEIVKAKIMNETRTTLLDPDSCRKA-ILCYSEE 5286
Query: 57 SIKVNNNSKTELTPAAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQC 116
V+++ C + A GY +FY+ V +L CV KCT G + ++C+ G C
Sbjct: 5287 DTFVDSSVTPGFDFQEQCTQKAAEGYTQFYYVDVLDGKLACVNKCTKGTKSQMNCNLGTC 5346
Query: 117 VLETSGPTCRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGW 176
L+ SGP C C +T+THW+ G CE + ++LV G+ A++ +LLLAL + +
Sbjct: 5347 QLQRSGPRCLCPNTNTHWYWGETCEFNIA-KSLVYGIV--GAVMAVLLLALIILIILFSL 5403
Query: 177 WGGQRRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDT---------NFHVALENV 227
+R +D ++W + E G F +D +++ NF LE V
Sbjct: 5404 SQRKRHREQYDVPQEWRK---EGTPGIFQKTAIWEDQNLRESRFGLENAYNNFRPTLETV 5460
Query: 228 DTTMKVHIKRPEMTSSSV 245
D+ ++HI+RPEM +S+V
Sbjct: 5461 DSGTELHIQRPEMVASTV 5478
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 115 bits (288), Expect = 3e-26
Identities = 71/252 (28%), Positives = 125/252 (49%), Gaps = 11/252 (4%)
Query: 2 GSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQDVNSCQD--SQTLCFKPDSIK 59
GS+VV++ VLL ++P+ ++ + +KE + + D S +CF +
Sbjct: 4243 GSVVVEHDVLLRTKYTPEYKTVLDNATEVVKEKITKVTTQQIMINDICSDMMCFNTTGTQ 4302
Query: 60 VNNNSKTELTPAAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLE 119
V N + T+ P CR+ A Y +++ + C++ C G + +C+ G+C +
Sbjct: 4303 VQNITVTQYDPEEDCRKMAKE-YGDYFVVEYRDQKPYCISPCEPGFSVSKNCNLGKCQMS 4361
Query: 120 TSGPTCRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGWWGG 179
SGP C C +T+THW+SG C + G + AG L++++L+AL + RS
Sbjct: 4362 LSGPQCLCVTTETHWYSGETCNQGTQKSLVYGLVGAGVVLMLIILVALLMLVFRSKREVK 4421
Query: 180 QRRGRSWDQDRKWFETWDEEVVGTFSNWGF----EDDGTDKD---TNFHVALENVDTTMK 232
+++ R Q KW E GTF N GF +DD + +NF +L ++D K
Sbjct: 4422 RQKYR-LSQLYKWQEEDSGPAPGTFQNIGFDICQDDDSIHLESIYSNFQPSLRHIDPETK 4480
Query: 233 VHIKRPEMTSSS 244
+ I+RP++ ++S
Sbjct: 4481 IRIQRPQVMTTS 4492
>gi|89026265 PREDICTED: mucin 12 [Homo sapiens]
Length = 978
Score = 106 bits (264), Expect = 2e-23
Identities = 72/246 (29%), Positives = 122/246 (49%), Gaps = 20/246 (8%)
Query: 1 NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQ----DVNSCQDSQTLCFKPD 56
NGSIVV V+LE ++ + E +E + +K + N ++ D +SC+ + LC+ +
Sbjct: 731 NGSIVVKNDVILEADYTLEYEELFENLAEIVKAKIMNETRTTLLDPDSCRKA-ILCYSEE 789
Query: 57 SIKVNNNSKTELTPAAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQC 116
V+++ C + A GY +FY+ V +L CV KCT G + ++C+ G C
Sbjct: 790 DTFVDSSVTPGFDFQEQCTQKAAEGYTQFYYVDVLDGKLACVNKCTKGTKSQMNCNLGTC 849
Query: 117 VLETSGPTCRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGW 176
L+ SGP C C +T+THW+ G CE + ++LV G+ A++ +LLLAL + +
Sbjct: 850 QLQRSGPRCLCPNTNTHWYWGETCEFNIA-KSLVYGIV--GAVMAVLLLALIILIILFSL 906
Query: 177 WGGQRRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGTDKDT---------NFHVALENV 227
+R +D ++W + E G F +D +++ NF LE V
Sbjct: 907 SQRKRHREQYDVPQEWRK---EGTPGIFQKTAIWEDQNLRESRFGLENAYNNFRPTLETV 963
Query: 228 DTTMKV 233
D+ +V
Sbjct: 964 DSGTEV 969
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 102 bits (255), Expect = 2e-22
Identities = 64/218 (29%), Positives = 110/218 (50%), Gaps = 8/218 (3%)
Query: 1 NGSIVVDYLVLLEMPFSPQLESEYEQVKTTLKEGLQNASQ----DVNSCQDSQTLCFKPD 56
NGSIVV V+LE ++ + E +E + +K + N ++ D +SC+ + LC+ +
Sbjct: 1665 NGSIVVKNDVILEADYTLEYEELFENLAEIVKAKIMNETRTTLLDPDSCRKA-ILCYSEE 1723
Query: 57 SIKVNNNSKTELTPAAICRRAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQC 116
V+++ C + A GY +FY+ V +L CV KCT G + ++C+ G C
Sbjct: 1724 DTFVDSSVTPGFDFQEQCTQKAAEGYTQFYYVDVLDGKLACVNKCTKGTKSQMNCNLGTC 1783
Query: 117 VLETSGPTCRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGW 176
L+ SGP C C +T+THW+ G CE + ++LV G+ A++ +LLLAL + +
Sbjct: 1784 QLQRSGPRCLCPNTNTHWYWGETCEFNIA-KSLVYGIV--GAVMAVLLLALIILIILFSL 1840
Query: 177 WGGQRRGRSWDQDRKWFETWDEEVVGTFSNWGFEDDGT 214
+R +D ++W + + + W D T
Sbjct: 1841 SQRKRHREQYDVPQEWRKEGTPGIFQKTAIWEAPDPDT 1878
>gi|139394621 chondroitin sulfate proteoglycan 5 (neuroglycan C)
precursor [Homo sapiens]
Length = 539
Score = 39.7 bits (91), Expect = 0.002
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 111 CHQG-QCVL-ETSGPTCRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLL 165
CH G QC L E G CRC + D W G RCE ++ V + G+A LVLLLL
Sbjct: 381 CHNGGQCYLVENIGAFCRCNTQDYIWHKGMRCE-SIITDFQVMCVAVGSAALVLLLL 436
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 38.5 bits (88), Expect = 0.005
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 81 GYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLETSGPTCRCYSTDTHWFSGPRC 140
GY+ Y P T CV+ C+ G + H GQC SGP C C S + G C
Sbjct: 5179 GYDLVYSPQSGFT---CVSPCSRGYCD----HGGQCQHLPSGPRCSCVSFSIYTAWGEHC 5231
Query: 141 EVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGW 176
E G+ G AL LLLL +G V W
Sbjct: 5232 EHLSMKLDAFFGIFFG-ALGGLLLLGVGTFVVLRFW 5266
>gi|112382231 mucin 4 isoform e [Homo sapiens]
Length = 1125
Score = 38.5 bits (88), Expect = 0.005
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 81 GYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLETSGPTCRCYSTDTHWFSGPRC 140
GY+ Y P T CV+ C+ G + H GQC SGP C C S + G C
Sbjct: 1020 GYDLVYSPQSGFT---CVSPCSRGYCD----HGGQCQHLPSGPRCSCVSFSIYTAWGEHC 1072
Query: 141 EVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGW 176
E G+ G AL LLLL +G V W
Sbjct: 1073 EHLSMKLDAFFGIFFG-ALGGLLLLGVGTFVVLRFW 1107
>gi|112382233 mucin 4 isoform d [Homo sapiens]
Length = 1176
Score = 38.5 bits (88), Expect = 0.005
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 81 GYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQGQCVLETSGPTCRCYSTDTHWFSGPRC 140
GY+ Y P T CV+ C+ G + H GQC SGP C C S + G C
Sbjct: 1071 GYDLVYSPQSGFT---CVSPCSRGYCD----HGGQCQHLPSGPRCSCVSFSIYTAWGEHC 1123
Query: 141 EVAVHWRALVGGLTAGAALLVLLLLALGVRAVRSGW 176
E G+ G AL LLLL +G V W
Sbjct: 1124 EHLSMKLDAFFGIFFG-ALGGLLLLGVGTFVVLRFW 1158
>gi|126012573 low density lipoprotein-related protein 2 [Homo sapiens]
Length = 4655
Score = 35.0 bits (79), Expect = 0.059
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 15/94 (15%)
Query: 99 TKCTSGVDNAIDC-------HQGQCVL-ETSGPTCRCYSTDTHWFSGPRCEVAVHWRALV 150
T+C + ++ I+ H G C ET P C+C S ++G CE+A + +
Sbjct: 4365 TECDAAIELPINLPPPCRCMHGGNCYFDETDLPKCKCPSG----YTGKYCEMAFS-KGIS 4419
Query: 151 GGLTAGAALL-VLLLLALGVRAVRSGWWGGQRRG 183
G TA A LL +LL++ +G A+ +G++ +R G
Sbjct: 4420 PGTTAVAVLLTILLIVVIGALAI-AGFFHYRRTG 4452
>gi|153070262 meprin A alpha [Homo sapiens]
Length = 746
Score = 33.5 bits (75), Expect = 0.17
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 112 HQGQCVLETSGPTCRCYSTDTHWFSGPRCE-VAVHWRAL--VGGLTAGAALLVLLLLAL 167
+ G CV +CRC S +++G RC+ V VH L V G TAG L ++A+
Sbjct: 681 NDGICVNVKGMASCRCISGHAFFYTGERCQAVQVHGSVLGMVIGGTAGVIFLTFSIIAI 739
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 33.5 bits (75), Expect = 0.17
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 19 QLESEYEQVKTTLK---EGLQNASQDVNSCQDSQTLCFKPDSIKVNNNSKTELTPAAICR 75
+L E++ TT+K G++ DV + FKP + ++ + + A
Sbjct: 1060 ELNDSSEELYTTIKIMASGIKTKDPDVRLGLNQHYPSFKPPPFQYHHRNPMGIGVTA--- 1116
Query: 76 RAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQ 113
T + P T +RC TKC GVDN + H+
Sbjct: 1117 ----TNFTTHNIPQTFTTAIRC-TKCGKGVDNMPELHK 1149
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 33.5 bits (75), Expect = 0.17
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 19 QLESEYEQVKTTLK---EGLQNASQDVNSCQDSQTLCFKPDSIKVNNNSKTELTPAAICR 75
+L E++ TT+K G++ DV + FKP + ++ + + A
Sbjct: 1261 ELNDSSEELYTTIKIMASGIKTKDPDVRLGLNQHYPSFKPPPFQYHHRNPMGIGVTA--- 1317
Query: 76 RAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQ 113
T + P T +RC TKC GVDN + H+
Sbjct: 1318 ----TNFTTHNIPQTFTTAIRC-TKCGKGVDNMPELHK 1350
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 33.5 bits (75), Expect = 0.17
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 19 QLESEYEQVKTTLK---EGLQNASQDVNSCQDSQTLCFKPDSIKVNNNSKTELTPAAICR 75
+L E++ TT+K G++ DV + FKP + ++ + + A
Sbjct: 1261 ELNDSSEELYTTIKIMASGIKTKDPDVRLGLNQHYPSFKPPPFQYHHRNPMGIGVTA--- 1317
Query: 76 RAAPTGYEEFYFPLVEATRLRCVTKCTSGVDNAIDCHQ 113
T + P T +RC TKC GVDN + H+
Sbjct: 1318 ----TNFTTHNIPQTFTTAIRC-TKCGKGVDNMPELHK 1350
>gi|153070264 meprin A beta [Homo sapiens]
Length = 701
Score = 33.1 bits (74), Expect = 0.23
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 112 HQGQCVLETSGPTCRCYSTDTHWFSGPRCEVAVHWR-ALVGGLTAGAALLVLLLL 165
+ G C + CRC S + W+ G RCE R +V +++ A+ L+L+
Sbjct: 615 NDGVCTVRDGKAECRCQSGEDWWYMGERCEKRGSTRDTIVIAVSSTVAVFALMLI 669
>gi|11321571 slit homolog 3 [Homo sapiens]
Length = 1523
Score = 32.3 bits (72), Expect = 0.39
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 110 DCHQG-QCVLETSGPTCRCYSTDTHWFSGPRCE 141
+C G QC++ PTCRC F+GPRCE
Sbjct: 1127 ECQNGAQCIVVQQEPTCRC----PPGFAGPRCE 1155
Score = 28.1 bits (61), Expect = 7.3
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 107 NAIDCHQGQCVLETSG-PTCRCYSTDTHWFSGPRCE 141
+A CH GQC + G P C C FSG C+
Sbjct: 1413 SAFKCHHGQCHISDQGEPYCLCQP----GFSGEHCQ 1444
Score = 27.7 bits (60), Expect = 9.5
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 112 HQGQCVLETSGPTCRCYSTDTHWFSGPRCE 141
H QCV +G TC C FSGP CE
Sbjct: 1085 HGAQCVDTINGYTCTC----PQGFSGPFCE 1110
>gi|116235485 delta-notch-like EGF repeat-containing transmembrane
[Homo sapiens]
Length = 737
Score = 32.3 bits (72), Expect = 0.39
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 21/87 (24%)
Query: 112 HQGQCVLETSGPTCRCYSTDTHWFSGPRCEVAVHWRA----------------LVGGLTA 155
H G C+ + +G C C H + G CE+ + W++ ++ G
Sbjct: 592 HGGSCLDQPNGYNCHC----PHGWVGANCEIHLQWKSGHMAESLTNMPRHSLYIIIGALC 647
Query: 156 GAALLVLLLLALGV-RAVRSGWWGGQR 181
A +L+L++L +G+ R R + G R
Sbjct: 648 VAFILMLIILIVGICRISRIEYQGSSR 674
>gi|57242793 interphotoreceptor matrix proteoglycan 2 [Homo sapiens]
Length = 1241
Score = 31.6 bits (70), Expect = 0.66
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 112 HQGQC-VLETSGPTCRCYSTDTHWFSGPRCEVAVHWRALVGGLTAGAALLVLLLLAL 167
+ G+C ++ G CRC + W+ G CE V ++G A L+++ A+
Sbjct: 1063 NDGKCDIMPGHGAICRCRVGENWWYRGKHCEEFVSEPVIIGITIASVVGLLVIFSAI 1119
>gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo
sapiens]
Length = 1998
Score = 30.8 bits (68), Expect = 1.1
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 27 VKTTLKEGLQNASQDVNSCQDSQTLCFKPDSI--KVNNNSKTELTPAAICRRAAPTGYEE 84
+K T+K+ + + + N + L K D I ++N NS TE T + A P Y+
Sbjct: 1920 LKRTVKQA--SFTYNKNKIKGGANLLIKEDMIIDRINENSITEKTDLTMSTAACPPSYDR 1977
Query: 85 FYFPLVE 91
P+VE
Sbjct: 1978 VTKPIVE 1984
>gi|66346695 fibrillin 2 precursor [Homo sapiens]
Length = 2912
Score = 30.4 bits (67), Expect = 1.5
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 18/93 (19%)
Query: 35 LQNASQDVNSCQDSQTLCFKPDSIKVNNNSKTELTPAAICRRAAPTGYEEFYFPLVEATR 94
L + +DVN C +S +C I + + + E P GY ++ T
Sbjct: 2165 LHDTREDVNECLESPGICSNGQCINTDGSFRCE----------CPMGYN------LDYTG 2208
Query: 95 LRCVTKCTSGVDNAIDCHQGQCVLETSGPTCRC 127
+RCV + N C G C C C
Sbjct: 2209 VRCVDTDECSIGN--PCGNGTCTNVIGSFECNC 2239
>gi|126012562 low density lipoprotein-related protein 1 [Homo sapiens]
Length = 4544
Score = 30.0 bits (66), Expect = 1.9
Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 32/143 (22%)
Query: 95 LRCVTKCTSGVDNAIDCHQGQCVLETSG-PTCRCYSTDTHWFSGPRCEVAVHWRALVGGL 153
L CV C++G G C + + P C+C T GPRCE V + G +
Sbjct: 4375 LTCVGHCSNG---------GSCTMNSKMMPECQCPPHMT----GPRCEEHVFSQQQPGHI 4421
Query: 154 TAGAALLVLLLLALGVRAVRSGWWGGQRRGRSWDQDR----------------KWFETWD 197
+ L+LLLL + V V W+ + +G Q + K +E +
Sbjct: 4422 ASILIPLLLLLLLVLVAGV-VFWYKRRVQGAKGFQHQRMTNGAMNVEIGNPTYKMYEGGE 4480
Query: 198 EEVVGTFSNWGFEDDGTDKDTNF 220
+ VG + F D DK TNF
Sbjct: 4481 PDDVGGLLDADFALD-PDKPTNF 4502
Score = 27.7 bits (60), Expect = 9.5
Identities = 27/119 (22%), Positives = 38/119 (31%), Gaps = 13/119 (10%)
Query: 36 QNASQDVNSCQDSQTLCFKPDSIKVNNNSKTELTPAAICRRAAPTGYEEFYFPLVEATRL 95
Q A +D +C C ++ E+ P + +R P + L
Sbjct: 31 QFACRDQITCISKGWRCDGERDCPDGSDEAPEICPQSKAQRCQPNEHNCLGTELCVPMSR 90
Query: 96 RC--VTKCTSGVDNAIDCHQGQ-----------CVLETSGPTCRCYSTDTHWFSGPRCE 141
C V C G D C + Q CV GPTC C S+ G C+
Sbjct: 91 LCNGVQDCMDGSDEGPHCRELQGNCSRLGCQHHCVPTLDGPTCYCNSSFQLQADGKTCK 149
>gi|239756073 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 127
Score = 29.6 bits (65), Expect = 2.5
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 22/91 (24%)
Query: 91 EATRLRCVTKCTSGVDNAI------DCHQGQCVLETSGPTCR---CYSTD---------- 131
+ + LR CT GV A+ D H G ++ + P TD
Sbjct: 37 DVSLLRAGPVCTVGVPGAVCQAAVCDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVH 96
Query: 132 --THWFSGPRCEV-AVHWRALVGGLTAGAAL 159
HWF+ P C + A H VGG AG +
Sbjct: 97 KGVHWFAPPLCHIPAPHHLVTVGGAAAGGTV 127
>gi|239756071 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 127
Score = 29.6 bits (65), Expect = 2.5
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 22/91 (24%)
Query: 91 EATRLRCVTKCTSGVDNAI------DCHQGQCVLETSGPTCR---CYSTD---------- 131
+ + LR CT GV A+ D H G ++ + P TD
Sbjct: 37 DVSLLRAGPVCTVGVPGAVCQAAVCDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVH 96
Query: 132 --THWFSGPRCEV-AVHWRALVGGLTAGAAL 159
HWF+ P C + A H VGG AG +
Sbjct: 97 KGVHWFAPPLCHIPAPHHLVTVGGAAAGGTV 127
>gi|239750602 PREDICTED: hypothetical protein XP_002347477 isoform 1
[Homo sapiens]
Length = 127
Score = 29.6 bits (65), Expect = 2.5
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 22/91 (24%)
Query: 91 EATRLRCVTKCTSGVDNAI------DCHQGQCVLETSGPTCR---CYSTD---------- 131
+ + LR CT GV A+ D H G ++ + P TD
Sbjct: 37 DVSLLRAGPVCTVGVPGAVCQAAVCDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVH 96
Query: 132 --THWFSGPRCEV-AVHWRALVGGLTAGAAL 159
HWF+ P C + A H VGG AG +
Sbjct: 97 KGVHWFAPPLCHIPAPHHLVTVGGAAAGGTV 127
>gi|239750600 PREDICTED: hypothetical protein XP_002347478 isoform 2
[Homo sapiens]
Length = 127
Score = 29.6 bits (65), Expect = 2.5
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 22/91 (24%)
Query: 91 EATRLRCVTKCTSGVDNAI------DCHQGQCVLETSGPTCR---CYSTD---------- 131
+ + LR CT GV A+ D H G ++ + P TD
Sbjct: 37 DVSLLRAGPVCTVGVPGAVCQAAVCDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVH 96
Query: 132 --THWFSGPRCEV-AVHWRALVGGLTAGAAL 159
HWF+ P C + A H VGG AG +
Sbjct: 97 KGVHWFAPPLCHIPAPHHLVTVGGAAAGGTV 127
>gi|239744909 PREDICTED: hypothetical protein XP_002343293 isoform 1
[Homo sapiens]
Length = 127
Score = 29.6 bits (65), Expect = 2.5
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 22/91 (24%)
Query: 91 EATRLRCVTKCTSGVDNAI------DCHQGQCVLETSGPTCR---CYSTD---------- 131
+ + LR CT GV A+ D H G ++ + P TD
Sbjct: 37 DVSLLRAGPVCTVGVPGAVCQAAVCDVHAGVALVAVALPVLAGDLFLETDILDIYQGLVH 96
Query: 132 --THWFSGPRCEV-AVHWRALVGGLTAGAAL 159
HWF+ P C + A H VGG AG +
Sbjct: 97 KGVHWFAPPLCHIPAPHHLVTVGGAAAGGTV 127
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,784,716
Number of Sequences: 37866
Number of extensions: 436830
Number of successful extensions: 1257
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1207
Number of HSP's gapped (non-prelim): 76
length of query: 245
length of database: 18,247,518
effective HSP length: 100
effective length of query: 145
effective length of database: 14,460,918
effective search space: 2096833110
effective search space used: 2096833110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.