Guide to the Human Genome
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Name: LOC100289911 Sequence: fasta or formatted (127aa) NCBI GI: 239750600
Description:

PREDICTED: hypothetical protein XP_002347478 isoform 2

Not currently referenced in the text

Other entries for this name:
alt mRNA {127aa} PREDICTED: hypothetical protein XP_002347477 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         17           3
 C cysteine            3.1          4           1
 D aspartate           4.7          6           1
 E glutamate           1.6          2           1
 F phenylalanine       2.4          3           1
 G glycine            11.0         14           2
 H histidine           7.1          9           2
 I isoleucine          3.9          5           1
 K lysine              1.6          2           1
 L leucine            12.6         16           2
 M methionine          0.8          1           1
 N asparagine          0.8          1           1
 P proline             6.3          8           2
 Q glutamine           1.6          2           1
 R arginine            3.9          5           1
 S serine              1.6          2           1
 T threonine           4.7          6           1
 V valine             15.0         19           1
 W tryptophan          2.4          3           1
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347478 isofor... 
LOC100292323          1.000   PREDICTED: hypothetical protein isoform 1 
LOC100292323          1.000   PREDICTED: hypothetical protein isoform 2 
LOC100289911          1.000   PREDICTED: hypothetical protein XP_002347477 isofor...
LOC100287557          1.000   PREDICTED: hypothetical protein XP_002343293 isofor...
LOC100287557          1.000   PREDICTED: hypothetical protein XP_002343294 isofor...
LOC100134216          0.021   PREDICTED: similar to hCG1747328, partial 
MUC3B                 0.021   PREDICTED: mucin 3B, cell surface associated, parti...
MUC3A                 0.021   PREDICTED: mucin 3A, intestinal 
LOC100134674          0.021   PREDICTED: similar to intestinal mucin 
LOC100292458          0.012   PREDICTED: hypothetical protein 
FLJ46906              0.012   PREDICTED: hypothetical protein 
FLJ46906              0.012   PREDICTED: hypothetical protein LOC441172 
FLJ46906              0.012   PREDICTED: hypothetical protein LOC441172 
OLIG2                 0.008   oligodendrocyte lineage transcription factor 2 [Homo...
MDN1                  0.008   MDN1, midasin homolog 
OR4C12                0.004   olfactory receptor, family 4, subfamily C, member 12...
KIAA0774              0.004   hypothetical protein LOC23281 isoform a 
LOC100288232          0.004   PREDICTED: hypothetical protein XP_002343793 
EREG                  0.004   epiregulin preproprotein 
PRIC285               0.004   PPAR-alpha interacting complex protein 285 isoform ...
SIX5                  0.004   sine oculis homeobox homolog 5 
PRIC285               0.004   PPAR-alpha interacting complex protein 285 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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