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Search of human proteins with 169215606
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169215606 PREDICTED: similar to immunoglobulin superfamily,
member 3 [Homo sapiens]
(195 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169215606 PREDICTED: similar to immunoglobulin superfamily, m... 406 e-114
gi|239746626 PREDICTED: similar to KIAA0466 protein [Homo sapiens] 317 5e-87
gi|55953133 immunoglobulin superfamily, member 3 isoform 1 [Homo... 240 6e-64
gi|55953135 immunoglobulin superfamily, member 3 isoform 2 [Homo... 240 6e-64
gi|157694489 immunoglobulin superfamily, member 2 [Homo sapiens] 173 7e-44
gi|16445029 immunoglobulin superfamily, member 8 [Homo sapiens] 134 5e-32
gi|41152506 prostaglandin F2 receptor negative regulator [Homo s... 87 1e-17
gi|239750758 PREDICTED: hypothetical protein XP_002347493 [Homo ... 38 0.006
gi|239753216 PREDICTED: similar to immunoglobulin superfamily, m... 34 0.090
gi|169217835 PREDICTED: similar to hCG2038921 [Homo sapiens] 33 0.12
gi|169207803 PREDICTED: similar to hCG2038921 [Homo sapiens] 33 0.12
gi|118572606 hemicentin 1 [Homo sapiens] 32 0.34
gi|94420689 neural cell adhesion molecule 1 isoform 1 [Homo sapi... 32 0.34
gi|115529482 neural cell adhesion molecule 1 isoform 2 [Homo sap... 32 0.34
gi|115529478 neural cell adhesion molecule 1 isoform 3 [Homo sap... 32 0.34
gi|110349719 titin isoform N2-A [Homo sapiens] 31 0.58
gi|238624149 neuroplastin isoform d precursor [Homo sapiens] 31 0.76
gi|238624147 neuroplastin isoform c precursor [Homo sapiens] 31 0.76
gi|9257240 neuroplastin isoform a precursor [Homo sapiens] 31 0.76
gi|6912646 neuroplastin isoform b precursor [Homo sapiens] 31 0.76
gi|28372555 sodium channel, voltage-gated, type IV, beta isoform... 31 0.76
gi|32699028 V-set and immunoglobulin domain containing 1 [Homo s... 31 0.76
gi|144226847 obscurin-like 1 [Homo sapiens] 30 1.00
gi|4502499 cholesterol 25-hydroxylase [Homo sapiens] 30 1.00
gi|28373117 contactin 1 isoform 1 precursor [Homo sapiens] 30 1.3
gi|28373119 contactin 1 isoform 2 precursor [Homo sapiens] 30 1.3
gi|7661534 CD274 molecule [Homo sapiens] 29 2.2
gi|110349717 titin isoform novex-2 [Homo sapiens] 29 2.9
gi|110349713 titin isoform novex-1 [Homo sapiens] 29 2.9
gi|110349715 titin isoform N2-B [Homo sapiens] 29 2.9
>gi|169215606 PREDICTED: similar to immunoglobulin superfamily,
member 3 [Homo sapiens]
Length = 195
Score = 406 bits (1044), Expect = e-114
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MSHLRPPLDDETKKVKVLVKPRKEVCKETGGRLDVGIFRGFGSVLGEDPDLAIFQWHLFH 60
MSHLRPPLDDETKKVKVLVKPRKEVCKETGGRLDVGIFRGFGSVLGEDPDLAIFQWHLFH
Sbjct: 1 MSHLRPPLDDETKKVKVLVKPRKEVCKETGGRLDVGIFRGFGSVLGEDPDLAIFQWHLFH 60
Query: 61 HEFLRQSDGATLFQNNHSVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQW 120
HEFLRQSDGATLFQNNHSVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQW
Sbjct: 61 HEFLRQSDGATLFQNNHSVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQW 120
Query: 121 SIYLPSSPEREVQIVSTMDSSFPYAIYTQRVRGGKIFIERVQGNPTLLHITDLQARDAGE 180
SIYLPSSPEREVQIVSTMDSSFPYAIYTQRVRGGKIFIERVQGNPTLLHITDLQARDAGE
Sbjct: 121 SIYLPSSPEREVQIVSTMDSSFPYAIYTQRVRGGKIFIERVQGNPTLLHITDLQARDAGE 180
Query: 181 YECHTPSTEKQYFGS 195
YECHTPSTEKQYFGS
Sbjct: 181 YECHTPSTEKQYFGS 195
>gi|239746626 PREDICTED: similar to KIAA0466 protein [Homo sapiens]
Length = 155
Score = 317 bits (811), Expect = 5e-87
Identities = 151/152 (99%), Positives = 151/152 (99%)
Query: 44 VLGEDPDLAIFQWHLFHHEFLRQSDGATLFQNNHSVVSAQRQVTVQEGPLYRTEGSHITI 103
VLGEDPDLAIFQWHLFHHEFLRQSDGATL QNNHSVVSAQRQVTVQEGPLYRTEGSHITI
Sbjct: 4 VLGEDPDLAIFQWHLFHHEFLRQSDGATLVQNNHSVVSAQRQVTVQEGPLYRTEGSHITI 63
Query: 104 WCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTMDSSFPYAIYTQRVRGGKIFIERVQG 163
WCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTMDSSFPYAIYTQRVRGGKIFIERVQG
Sbjct: 64 WCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTMDSSFPYAIYTQRVRGGKIFIERVQG 123
Query: 164 NPTLLHITDLQARDAGEYECHTPSTEKQYFGS 195
NPTLLHITDLQARDAGEYECHTPSTEKQYFGS
Sbjct: 124 NPTLLHITDLQARDAGEYECHTPSTEKQYFGS 155
>gi|55953133 immunoglobulin superfamily, member 3 isoform 1 [Homo
sapiens]
Length = 1214
Score = 240 bits (612), Expect = 6e-64
Identities = 115/117 (98%), Positives = 116/117 (99%)
Query: 79 VVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTM 138
VVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTM
Sbjct: 16 VVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTM 75
Query: 139 DSSFPYAIYTQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYECHTPSTEKQYFGS 195
DSSFPYAIYTQRVRGGKIFIERVQGN TLLHITDLQARDAGEYECHTPST+KQYFGS
Sbjct: 76 DSSFPYAIYTQRVRGGKIFIERVQGNSTLLHITDLQARDAGEYECHTPSTDKQYFGS 132
Score = 38.1 bits (87), Expect = 0.005
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 85 QVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQ--WSIYLPSSPEREVQIVSTMDSSF 142
QV+ + L E I + C+V Q +F W ++ PS + ++ + +T +S+F
Sbjct: 701 QVSKSKRTLTLVENKPIQLNCSVKS-QTSQNSHFAVLWYVHKPSDADGKLILKTTHNSAF 759
Query: 143 PYAIYTQR--VRGGKIFIERVQGNPTLLHITDLQARDAGEYECH 184
Y Y + +R F V G L + + D+G Y CH
Sbjct: 760 EYGTYAEEEGLRARLQFERHVSGGLFSLTVQRAEVSDSGSYYCH 803
Score = 37.4 bits (85), Expect = 0.008
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 80 VSAQRQVTVQE-----------GPLYRTEGSHITIWCNVSGYQGPSEQNF-QWSIYLPSS 127
VS + +VTV++ G L E + + C V + Q +W ++ P+
Sbjct: 822 VSGRTEVTVKQPDSRLRLSQAQGNLSVLETRQVQLECVVLNRTSITSQLMVEWFVWKPNH 881
Query: 128 PEREVQIVSTMDSSFPYAIYTQRVR-GGKIFIERVQGNPTLLHITDLQARDAGEYECH 184
PERE + D++F Y + G++ +E L I ++ +D+G Y CH
Sbjct: 882 PERETVARLSRDATFHYGEQAAKNNLKGRLHLESPSPGVYRLFIQNVAVQDSGTYSCH 939
Score = 32.7 bits (73), Expect = 0.20
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 143 PYAIYTQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYECH 184
P + Y +R G + +E+VQ N L I + + D G+YECH
Sbjct: 491 PGSSYWERSSFGGVQMEQVQPNSFSLGIFNSRKEDEGQYECH 532
Score = 28.9 bits (63), Expect = 2.9
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
Query: 65 RQSDGATLFQNNHSVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYL 124
+Q G+ + N V+ Q T L+R E + + C V+ + + +
Sbjct: 127 KQYFGSYSAKMNLVVIPDSLQTTAMPQTLHRVEQDPLELTCEVAS-ETIQHSHLSVAWLR 185
Query: 125 PSSPEREVQIVSTMDSSFPYAI--YTQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYE 182
E+ V+++S ++ Y QR G++ ++++ L I LQ D GE+
Sbjct: 186 QKVGEKPVEVISLSRDFMLHSSSEYAQRQSLGEVRLDKLGRTTFRLTIFHLQPSDQGEFY 245
Query: 183 C 183
C
Sbjct: 246 C 246
Score = 28.9 bits (63), Expect = 2.9
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Query: 154 GKIFIERVQGNPTLLHITDLQA--RDAGEYECHT----PSTEKQYF 193
G++ +R+ +P L +T LQA +D G Y CH PS +K+++
Sbjct: 1071 GRLRFQRL--SPVLYRLTVLQASPQDTGNYSCHVEEWLPSPQKEWY 1114
>gi|55953135 immunoglobulin superfamily, member 3 isoform 2 [Homo
sapiens]
Length = 1194
Score = 240 bits (612), Expect = 6e-64
Identities = 115/117 (98%), Positives = 116/117 (99%)
Query: 79 VVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTM 138
VVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTM
Sbjct: 16 VVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTM 75
Query: 139 DSSFPYAIYTQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYECHTPSTEKQYFGS 195
DSSFPYAIYTQRVRGGKIFIERVQGN TLLHITDLQARDAGEYECHTPST+KQYFGS
Sbjct: 76 DSSFPYAIYTQRVRGGKIFIERVQGNSTLLHITDLQARDAGEYECHTPSTDKQYFGS 132
Score = 38.1 bits (87), Expect = 0.005
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 85 QVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQ--WSIYLPSSPEREVQIVSTMDSSF 142
QV+ + L E I + C+V Q +F W ++ PS + ++ + +T +S+F
Sbjct: 681 QVSKSKRTLTLVENKPIQLNCSVKS-QTSQNSHFAVLWYVHKPSDADGKLILKTTHNSAF 739
Query: 143 PYAIYTQR--VRGGKIFIERVQGNPTLLHITDLQARDAGEYECH 184
Y Y + +R F V G L + + D+G Y CH
Sbjct: 740 EYGTYAEEEGLRARLQFERHVSGGLFSLTVQRAEVSDSGSYYCH 783
Score = 37.4 bits (85), Expect = 0.008
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 80 VSAQRQVTVQE-----------GPLYRTEGSHITIWCNVSGYQGPSEQNF-QWSIYLPSS 127
VS + +VTV++ G L E + + C V + Q +W ++ P+
Sbjct: 802 VSGRTEVTVKQPDSRLRLSQAQGNLSVLETRQVQLECVVLNRTSITSQLMVEWFVWKPNH 861
Query: 128 PEREVQIVSTMDSSFPYAIYTQRVR-GGKIFIERVQGNPTLLHITDLQARDAGEYECH 184
PERE + D++F Y + G++ +E L I ++ +D+G Y CH
Sbjct: 862 PERETVARLSRDATFHYGEQAAKNNLKGRLHLESPSPGVYRLFIQNVAVQDSGTYSCH 919
Score = 32.7 bits (73), Expect = 0.20
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 143 PYAIYTQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYECH 184
P + Y +R G + +E+VQ N L I + + D G+YECH
Sbjct: 471 PGSSYWERSSFGGVQMEQVQPNSFSLGIFNSRKEDEGQYECH 512
Score = 28.9 bits (63), Expect = 2.9
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
Query: 65 RQSDGATLFQNNHSVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYL 124
+Q G+ + N V+ Q T L+R E + + C V+ + + +
Sbjct: 127 KQYFGSYSAKMNLVVIPDSLQTTAMPQTLHRVEQDPLELTCEVAS-ETIQHSHLSVAWLR 185
Query: 125 PSSPEREVQIVSTMDSSFPYAI--YTQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYE 182
E+ V+++S ++ Y QR G++ ++++ L I LQ D GE+
Sbjct: 186 QKVGEKPVEVISLSRDFMLHSSSEYAQRQSLGEVRLDKLGRTTFRLTIFHLQPSDQGEFY 245
Query: 183 C 183
C
Sbjct: 246 C 246
Score = 28.9 bits (63), Expect = 2.9
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 8/46 (17%)
Query: 154 GKIFIERVQGNPTLLHITDLQA--RDAGEYECHT----PSTEKQYF 193
G++ +R+ +P L +T LQA +D G Y CH PS +K+++
Sbjct: 1051 GRLRFQRL--SPVLYRLTVLQASPQDTGNYSCHVEEWLPSPQKEWY 1094
>gi|157694489 immunoglobulin superfamily, member 2 [Homo sapiens]
Length = 1021
Score = 173 bits (439), Expect = 7e-44
Identities = 74/113 (65%), Positives = 100/113 (88%)
Query: 83 QRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTMDSSF 142
QR+VTVQ+GPL+R EG ++I CNV+G+QGPSEQ+FQWS+YLP++P +EVQI+ST D++F
Sbjct: 21 QREVTVQKGPLFRAEGYPVSIGCNVTGHQGPSEQHFQWSVYLPTNPTQEVQIISTKDAAF 80
Query: 143 PYAIYTQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYECHTPSTEKQYFGS 195
YA+YTQRVR G +++ERVQGN LLHI+ LQ +DAGEYECHTP+T+++Y+GS
Sbjct: 81 SYAVYTQRVRSGDVYVERVQGNSVLLHISKLQMKDAGEYECHTPNTDEKYYGS 133
Score = 27.7 bits (60), Expect = 6.5
Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 3/118 (2%)
Query: 69 GATLFQNNHSVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGP-SEQNFQWSIYLPSS 127
G+ + N V+ T+ L + EG + + C S + + W +
Sbjct: 132 GSYSAKTNLIVIPDTLSATMSSQTLGKEEGEPLALTCEASKATAQHTHLSVTWYLTQDGG 191
Query: 128 PEREVQIVSTMDSSF--PYAIYTQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYEC 183
+ +I+S P +YT+R + + ++ L I LQ+ D G+ C
Sbjct: 192 GSQATEIISLSKDFILVPGPLYTERFAASDVQLNKLGPTTFRLSIERLQSSDQGQLFC 249
>gi|16445029 immunoglobulin superfamily, member 8 [Homo sapiens]
Length = 613
Score = 134 bits (337), Expect = 5e-32
Identities = 58/112 (51%), Positives = 84/112 (75%)
Query: 84 RQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTMDSSFP 143
R+V V EGPLYR G+ ++I CNV+GY+GP++QNF+W +Y P +P+ + IVST D+ F
Sbjct: 28 REVLVPEGPLYRVAGTAVSISCNVTGYEGPAQQNFEWFLYRPEAPDTALGIVSTKDTQFS 87
Query: 144 YAIYTQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYECHTPSTEKQYFGS 195
YA++ RV G++ ++R+QG+ +L I LQA+DAG YECHTPST+ +Y GS
Sbjct: 88 YAVFKSRVVAGEVQVQRLQGDAVVLKIARLQAQDAGIYECHTPSTDTRYLGS 139
Score = 34.7 bits (78), Expect = 0.053
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 13/140 (9%)
Query: 56 WHLFHHEFLRQSDG---------ATLFQNNHSVVSAQRQVTVQEGPLYRTEGSHITIWCN 106
+H E+++ DG A L + +S+Q VTV G G + + CN
Sbjct: 268 YHCTAAEWIQDPDGSWAQIAEKRAVLAHVDVQTLSSQLAVTVGPGERRIGPGEPLELLCN 327
Query: 107 VSGYQGPSEQNFQWSI---YLPSSPEREVQIVSTMDSSFPYAIYTQRVRGGKIFIERVQG 163
VSG P+ ++ +S+ P+ ++V+ +D+ ++ G I +E+V
Sbjct: 328 VSGALPPAGRHAAYSVGWEMAPAGAPGPGRLVAQLDTEGVGSL-GPGYEGRHIAMEKVAS 386
Query: 164 NPTLLHITDLQARDAGEYEC 183
L + + DAG Y C
Sbjct: 387 RTYRLRLEAARPGDAGTYRC 406
>gi|41152506 prostaglandin F2 receptor negative regulator [Homo
sapiens]
Length = 879
Score = 86.7 bits (213), Expect = 1e-17
Identities = 45/112 (40%), Positives = 62/112 (55%), Gaps = 2/112 (1%)
Query: 84 RQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTMDSSFP 143
R V V L R G+ + I CNVS Y GPSEQNF WS S V++ ST + FP
Sbjct: 22 RVVRVPTATLVRVVGTELVIPCNVSDYDGPSEQNFDWSF--SSLGSSFVELASTWEVGFP 79
Query: 144 YAIYTQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYECHTPSTEKQYFGS 195
+Y +R++ G+I + R + LHI ++Q D G Y+C TPST+ G+
Sbjct: 80 AQLYQERLQRGEILLRRTANDAVELHIKNVQPSDQGHYKCSTPSTDATVQGN 131
>gi|239750758 PREDICTED: hypothetical protein XP_002347493 [Homo
sapiens]
Length = 120
Score = 37.7 bits (86), Expect = 0.006
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 88 VQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTMDSSFPYAIY 147
VQ G + G+ + + C VSGY +E + W + +P + ++ + D IY
Sbjct: 24 VQSGAEVKKPGASVKVSCKVSGYT-LTELSMHW---VRQAPGKGLEWMGGFDPEDGETIY 79
Query: 148 TQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYECHT 185
Q+ +G E + + ++ L++ D Y C T
Sbjct: 80 AQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCAT 117
>gi|239753216 PREDICTED: similar to immunoglobulin superfamily,
member 3 [Homo sapiens]
Length = 376
Score = 33.9 bits (76), Expect = 0.090
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 97 EGSHITIWCNVSGYQGPSEQ-NFQWSIYLPSSPEREVQIVSTMDSSFPYAIYTQRVRGGK 155
EG + C+V P + + W + + ++ + + P + Y +R G
Sbjct: 257 EGEDLRFSCSVRMAGRPQGRFSVIWQLVDRQNRRSDIMWLDRDGTVQPGSSYWERSSFGS 316
Query: 156 IFIERVQGNPTLLHITDLQARDAGEYECH 184
+ +E+VQ N L I + + D G+YECH
Sbjct: 317 VQMEQVQPNSFSLGIFNSRKEDEGQYECH 345
>gi|169217835 PREDICTED: similar to hCG2038921 [Homo sapiens]
Length = 120
Score = 33.5 bits (75), Expect = 0.12
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 88 VQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTMDSSFPYAIY 147
VQ G + G+ + I C VSGY ++ W + +P + ++ + +D IY
Sbjct: 24 VQSGAEVKKPGATVKISCKVSGYTF-TDYYMHW---VQQAPGKGLEWMGLVDPEDGETIY 79
Query: 148 TQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYECHT 185
++ +G + + ++ L++ D Y C T
Sbjct: 80 AEKFQGRVTITADTSTDTAYMELSSLRSEDTAVYYCAT 117
>gi|169207803 PREDICTED: similar to hCG2038921 [Homo sapiens]
Length = 120
Score = 33.5 bits (75), Expect = 0.12
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 88 VQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTMDSSFPYAIY 147
VQ G + G+ + I C VSGY ++ W + +P + ++ + +D IY
Sbjct: 24 VQSGAEVKKPGATVKISCKVSGYTF-TDYYMHW---VQQAPGKGLEWMGLVDPEDGETIY 79
Query: 148 TQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYECHT 185
++ +G + + ++ L++ D Y C T
Sbjct: 80 AEKFQGRVTITADTSTDTAYMELSSLRSEDTAVYYCAT 117
>gi|118572606 hemicentin 1 [Homo sapiens]
Length = 5635
Score = 32.0 bits (71), Expect = 0.34
Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 26/148 (17%)
Query: 71 TLFQNNHSVVSAQRQVTVQEGPLYRTEGSHIT----IWCNVSGYQGPSEQNFQWSIYLPS 126
T ++N + + + +G + + + ++ C G ++NF ++Y+P
Sbjct: 3092 TWYKNGRMITESTHVEILADGQMLHIKKAEVSDTGQYVCRAINVAGRDDKNFHLNVYVPP 3151
Query: 127 S---PEREVQIVSTMDS--------------SFPYAIYTQRVRGGKIFIERVQGNPTLLH 169
S PEREV IV T+ + + + +R+ R+ + L
Sbjct: 3152 SIEGPEREV-IVETISNPVTLTCDATGIPPPTIAWLKNHKRIENSDSLEVRILSGGSKLQ 3210
Query: 170 ITDLQARDAGEYECHTPSTE----KQYF 193
I Q D+G Y C + E K YF
Sbjct: 3211 IARSQHSDSGNYTCIASNMEGKAQKYYF 3238
Score = 30.4 bits (67), Expect = 1.00
Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 21/147 (14%)
Query: 63 FLRQSDGATLFQNNHSVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSI 122
+L+ + F N V+S R + + + T G + + N +G + +++ +
Sbjct: 2045 WLKDGSPVSSFSNGLQVLSGGRILALTSAQISDT-GRYTCVAVNAAGEK---QRDIDLRV 2100
Query: 123 YLPSSPEREVQIVSTMDS----------SFPYAIYTQRVRGGKIFIE---RVQGNPTLLH 169
Y+P + E Q VS + S + P T G + + + N ++L
Sbjct: 2101 YVPPNIMGEEQNVSVLISQAVELLCQSDAIPPPTLTWLKDGHPLLKKPGLSISENRSVLK 2160
Query: 170 ITDLQARDAGEYECHTPS----TEKQY 192
I D Q +D G Y C + TEK Y
Sbjct: 2161 IEDAQVQDTGRYTCEATNVAGKTEKNY 2187
Score = 27.3 bits (59), Expect = 8.4
Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 20/133 (15%)
Query: 71 TLFQNNHSVVSAQRQVTVQEGPLYRTEGSHI----TIWCNVSGYQGPSEQNFQWSIYLPS 126
T +++ ++S+ + + + +G + + T C+V+ G +E++F +Y+P
Sbjct: 1580 TWYKDGQPIMSSSQALYIDKGQYLHIPRAQVSDSATYTCHVANVAGTAEKSFHVDVYVPP 1639
Query: 127 SPE--------REVQIVSTMD-----SSFPYAIYTQRVRGGKIFIE---RVQGNPTLLHI 170
E ++V I ++ + P I T G + R++ L I
Sbjct: 1640 MIEGNLATPLNKQVVIAHSLTLECKAAGNPSPILTWLKDGVPVKANDNIRIEAGGKKLEI 1699
Query: 171 TDLQARDAGEYEC 183
Q D G+Y C
Sbjct: 1700 MSAQEIDRGQYIC 1712
>gi|94420689 neural cell adhesion molecule 1 isoform 1 [Homo
sapiens]
Length = 848
Score = 32.0 bits (71), Expect = 0.34
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 71 TLFQNNHSVVSAQRQVTVQEGPL--YRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSP 128
T+ Q++ S+ + +GP+ Y EG+ + I C V Y + F+ LPSS
Sbjct: 390 TIGQDSQSMYLEVQYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSN 449
Query: 129 EREVQIVSTMDSSF 142
++I +T +S+
Sbjct: 450 YSNIKIYNTPSASY 463
>gi|115529482 neural cell adhesion molecule 1 isoform 2 [Homo
sapiens]
Length = 858
Score = 32.0 bits (71), Expect = 0.34
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 71 TLFQNNHSVVSAQRQVTVQEGPL--YRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSP 128
T+ Q++ S+ + +GP+ Y EG+ + I C V Y + F+ LPSS
Sbjct: 400 TIGQDSQSMYLEVQYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSN 459
Query: 129 EREVQIVSTMDSSF 142
++I +T +S+
Sbjct: 460 YSNIKIYNTPSASY 473
>gi|115529478 neural cell adhesion molecule 1 isoform 3 [Homo
sapiens]
Length = 761
Score = 32.0 bits (71), Expect = 0.34
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 71 TLFQNNHSVVSAQRQVTVQEGPL--YRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSP 128
T+ Q++ S+ + +GP+ Y EG+ + I C V Y + F+ LPSS
Sbjct: 390 TIGQDSQSMYLEVQYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSN 449
Query: 129 EREVQIVSTMDSSF 142
++I +T +S+
Sbjct: 450 YSNIKIYNTPSASY 463
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 31.2 bits (69), Expect = 0.58
Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 27/104 (25%)
Query: 80 VSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTMD 139
V A T + P+ +GS + + C +SG +P EV V
Sbjct: 6454 VKAPPVFTQKPSPVGALKGSDVILQCEISG-----------------TPPFEVVWVKDR- 6495
Query: 140 SSFPYAIYTQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYEC 183
++VR K F + T LHI +L+A D GEY C
Sbjct: 6496 ---------KQVRNSKKFKITSKHFDTSLHILNLEASDVGEYHC 6530
Score = 28.9 bits (63), Expect = 2.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 163 GNPTLLHITDLQARDAGEYEC 183
G LHI D+Q DAGEY C
Sbjct: 11170 GKDRKLHIIDVQLSDAGEYTC 11190
Score = 28.5 bits (62), Expect = 3.8
Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 19/124 (15%)
Query: 77 HSVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSS--------- 127
+ +V +R V+++ L + ++ T C VS G + ++ P S
Sbjct: 5283 YRLVCHERSVSLEVNNLELEDTANYT--CKVSNVAGDDACSGILTVKEPPSFLVKPGRQQ 5340
Query: 128 --PEREVQIVSTMDSSFPYAIY-----TQRVRGGKIFIERVQGNPTLLHITDLQARDAGE 180
P+ V+ + + + P+ I + V G K FI ++G+ + L++ + A G+
Sbjct: 5341 AIPDSTVEFKAILKGTPPFKIKWFKDDVELVSGPKCFIG-LEGSTSFLNLYSVDASKTGQ 5399
Query: 181 YECH 184
Y CH
Sbjct: 5400 YTCH 5403
Score = 28.1 bits (61), Expect = 4.9
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 78 SVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVS 136
++VS + VTV EG +T+ C++SGY P+ ++ + SS + ++ S
Sbjct: 944 TLVSGLKNVTV-------IEGESVTLECHISGYPSPTVTWYREDYQIESSIDFQITFQS 995
Score = 27.7 bits (60), Expect = 6.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 149 QRVRGGKIFIERVQGNPTLLHITDLQARDAGEYEC 183
+ +R GK + + T +HI ++ A D GEY+C
Sbjct: 7437 RELRSGKKYKIMSENFLTSIHILNVDAADIGEYQC 7471
>gi|238624149 neuroplastin isoform d precursor [Homo sapiens]
Length = 278
Score = 30.8 bits (68), Expect = 0.76
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 29/131 (22%)
Query: 55 QWHLFHHEFLRQSDGATLFQNNHSVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPS 114
++H +H AT+ V A +T + + EG T++C GY P
Sbjct: 99 EYHCVYHFVSAPKANATI------EVKAAPDITGHKRSENKNEGQDATMYCKSVGYPHP- 151
Query: 115 EQNFQWSIYLPSSPEREVQIVSTMDSSFPYAIYTQRVRGGKIFIERVQGNPTLLHITDLQ 174
W I+ + IV+T G+ FI + N T L+I +LQ
Sbjct: 152 ----DW-IWRKKENGMPMDIVNT---------------SGRFFIINKE-NYTELNIVNLQ 190
Query: 175 -ARDAGEYECH 184
D GEYEC+
Sbjct: 191 ITEDPGEYECN 201
>gi|238624147 neuroplastin isoform c precursor [Homo sapiens]
Length = 394
Score = 30.8 bits (68), Expect = 0.76
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 29/131 (22%)
Query: 55 QWHLFHHEFLRQSDGATLFQNNHSVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPS 114
++H +H AT+ V A +T + + EG T++C GY P
Sbjct: 215 EYHCVYHFVSAPKANATI------EVKAAPDITGHKRSENKNEGQDATMYCKSVGYPHP- 267
Query: 115 EQNFQWSIYLPSSPEREVQIVSTMDSSFPYAIYTQRVRGGKIFIERVQGNPTLLHITDLQ 174
W I+ + IV+T G+ FI + N T L+I +LQ
Sbjct: 268 ----DW-IWRKKENGMPMDIVNT---------------SGRFFIINKE-NYTELNIVNLQ 306
Query: 175 -ARDAGEYECH 184
D GEYEC+
Sbjct: 307 ITEDPGEYECN 317
>gi|9257240 neuroplastin isoform a precursor [Homo sapiens]
Length = 282
Score = 30.8 bits (68), Expect = 0.76
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 29/131 (22%)
Query: 55 QWHLFHHEFLRQSDGATLFQNNHSVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPS 114
++H +H AT+ V A +T + + EG T++C GY P
Sbjct: 99 EYHCVYHFVSAPKANATI------EVKAAPDITGHKRSENKNEGQDATMYCKSVGYPHP- 151
Query: 115 EQNFQWSIYLPSSPEREVQIVSTMDSSFPYAIYTQRVRGGKIFIERVQGNPTLLHITDLQ 174
W I+ + IV+T G+ FI + N T L+I +LQ
Sbjct: 152 ----DW-IWRKKENGMPMDIVNT---------------SGRFFIINKE-NYTELNIVNLQ 190
Query: 175 -ARDAGEYECH 184
D GEYEC+
Sbjct: 191 ITEDPGEYECN 201
>gi|6912646 neuroplastin isoform b precursor [Homo sapiens]
Length = 398
Score = 30.8 bits (68), Expect = 0.76
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 29/131 (22%)
Query: 55 QWHLFHHEFLRQSDGATLFQNNHSVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPS 114
++H +H AT+ V A +T + + EG T++C GY P
Sbjct: 215 EYHCVYHFVSAPKANATI------EVKAAPDITGHKRSENKNEGQDATMYCKSVGYPHP- 267
Query: 115 EQNFQWSIYLPSSPEREVQIVSTMDSSFPYAIYTQRVRGGKIFIERVQGNPTLLHITDLQ 174
W I+ + IV+T G+ FI + N T L+I +LQ
Sbjct: 268 ----DW-IWRKKENGMPMDIVNT---------------SGRFFIINKE-NYTELNIVNLQ 306
Query: 175 -ARDAGEYECH 184
D GEYEC+
Sbjct: 307 ITEDPGEYECN 317
>gi|28372555 sodium channel, voltage-gated, type IV, beta isoform 1
precursor [Homo sapiens]
Length = 228
Score = 30.8 bits (68), Expect = 0.76
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 93 LYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTM--DSSFPYAIYTQR 150
+Y G+ I + C S G + +F+W+ SS ++ I T+ + S P
Sbjct: 41 IYAVNGTEILLPCTFSSCFGFEDLHFRWTYN--SSDAFKILIEGTVKNEKSDPKVTLKDD 98
Query: 151 VRGGKIFIERVQGNPTLLHITDLQARDAGEYECHTPSTEK 190
R + + + N + + DL+ D G+Y CH + ++
Sbjct: 99 DRITLVGSTKEKMNNISIVLRDLEFSDTGKYTCHVKNPKE 138
>gi|32699028 V-set and immunoglobulin domain containing 1 [Homo
sapiens]
Length = 387
Score = 30.8 bits (68), Expect = 0.76
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query: 85 QVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQ-NFQWSIYLPSSPEREVQIVSTMDSSFP 143
QVT+ +G + T GS++T+ C + EQ + QWS + ++E++ +S S
Sbjct: 23 QVTIPDGFVNVTVGSNVTLICIYTTTVASREQLSIQWSFF----HKKEMEPISIYFSQGG 78
Query: 144 YAIYTQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYEC 183
A+ + + +I GN ++ I+ +Q D+G Y C
Sbjct: 79 QAVAIGQFK-DRITGSNDPGNASIT-ISHMQPADSGIYIC 116
>gi|144226847 obscurin-like 1 [Homo sapiens]
Length = 1896
Score = 30.4 bits (67), Expect = 1.00
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 126 SSPEREVQIVSTMDSSFPYAIYT--QRVRGGKIFIERVQGNPTLLHITDLQARDAGEYEC 183
++ ER V FP Y Q+V ++ + ++ G L + + + +D+GE+EC
Sbjct: 729 TTSERVVLTCELSRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFEC 788
Query: 184 HTPSTEKQYFG 194
T +FG
Sbjct: 789 RTEGV-SAFFG 798
>gi|4502499 cholesterol 25-hydroxylase [Homo sapiens]
Length = 272
Score = 30.4 bits (67), Expect = 1.00
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 22/93 (23%)
Query: 50 DLAIFQWHLFHHE--FLRQSDGATLFQNNHSVVSAQRQVTVQE----------------- 90
D+ F WHL HH+ +L ++ QN+ S A + ++V E
Sbjct: 136 DMEFFVWHLLHHKVPWLYRTFHKVHHQNSSSFALATQYMSVWELFSLGFFDMMNVTLLGC 195
Query: 91 GPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIY 123
PL + IW +V + G NF WS +
Sbjct: 196 HPLTTLTFHVVNIWLSVEDHSG---YNFPWSTH 225
>gi|28373117 contactin 1 isoform 1 precursor [Homo sapiens]
Length = 1018
Score = 30.0 bits (66), Expect = 1.3
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 28/108 (25%)
Query: 89 QEGPLYRT-EGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTMDSSFPYAIY 147
+E P R EG + + C+ Y P + +++W + E + TMD
Sbjct: 141 EERPEVRVKEGKGMVLLCDPP-YHFPDDLSYRWLL-------NEFPVFITMDK------- 185
Query: 148 TQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYEC--HTPSTEKQYF 193
+ F+ + GN L+I +++A D G Y C +PS K F
Sbjct: 186 -------RRFVSQTNGN---LYIANVEASDKGNYSCFVSSPSITKSVF 223
>gi|28373119 contactin 1 isoform 2 precursor [Homo sapiens]
Length = 1007
Score = 30.0 bits (66), Expect = 1.3
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 28/108 (25%)
Query: 89 QEGPLYRT-EGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVSTMDSSFPYAIY 147
+E P R EG + + C+ Y P + +++W + E + TMD
Sbjct: 130 EERPEVRVKEGKGMVLLCDPP-YHFPDDLSYRWLL-------NEFPVFITMDK------- 174
Query: 148 TQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYEC--HTPSTEKQYF 193
+ F+ + GN L+I +++A D G Y C +PS K F
Sbjct: 175 -------RRFVSQTNGN---LYIANVEASDKGNYSCFVSSPSITKSVF 212
>gi|7661534 CD274 molecule [Homo sapiens]
Length = 290
Score = 29.3 bits (64), Expect = 2.2
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 93 LYRTE-GSHITIWCNVSGYQGPSEQNFQWS---IYLPSSPEREVQIV-STMDSSFPYAIY 147
LY E GS++TI C P E+ + +Y + +Q V D ++ Y
Sbjct: 27 LYVVEYGSNMTIECKF-----PVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSY 81
Query: 148 TQRVRGGKIFIERVQGNPTLLHITDLQARDAGEYEC 183
QR R + +++ L ITD++ +DAG Y C
Sbjct: 82 RQRAR---LLKDQLSLGNAALQITDVKLQDAGVYRC 114
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 28.9 bits (63), Expect = 2.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 163 GNPTLLHITDLQARDAGEYEC 183
G LHI D+Q DAGEY C
Sbjct: 4865 GKDRKLHIIDVQLSDAGEYTC 4885
Score = 28.1 bits (61), Expect = 4.9
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 78 SVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVS 136
++VS + VTV EG +T+ C++SGY P+ ++ + SS + ++ S
Sbjct: 898 TLVSGLKNVTV-------IEGESVTLECHISGYPSPTVTWYREDYQIESSIDFQITFQS 949
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 28.9 bits (63), Expect = 2.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 163 GNPTLLHITDLQARDAGEYEC 183
G LHI D+Q DAGEY C
Sbjct: 4798 GKDRKLHIIDVQLSDAGEYTC 4818
Score = 28.1 bits (61), Expect = 4.9
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 78 SVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVS 136
++VS + VTV EG +T+ C++SGY P+ ++ + SS + ++ S
Sbjct: 898 TLVSGLKNVTV-------IEGESVTLECHISGYPSPTVTWYREDYQIESSIDFQITFQS 949
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 28.9 bits (63), Expect = 2.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 163 GNPTLLHITDLQARDAGEYEC 183
G LHI D+Q DAGEY C
Sbjct: 4673 GKDRKLHIIDVQLSDAGEYTC 4693
Score = 28.1 bits (61), Expect = 4.9
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 78 SVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSSPEREVQIVS 136
++VS + VTV EG +T+ C++SGY P+ ++ + SS + ++ S
Sbjct: 898 TLVSGLKNVTV-------IEGESVTLECHISGYPSPTVTWYREDYQIESSIDFQITFQS 949
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,222,652
Number of Sequences: 37866
Number of extensions: 356156
Number of successful extensions: 1077
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 900
Number of HSP's gapped (non-prelim): 196
length of query: 195
length of database: 18,247,518
effective HSP length: 97
effective length of query: 98
effective length of database: 14,574,516
effective search space: 1428302568
effective search space used: 1428302568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.