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Search of human proteins with 112420958
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|112420958 DNA-directed DNA polymerase nu [Homo sapiens]
(900 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|112420958 DNA-directed DNA polymerase nu [Homo sapiens] 1791 0.0
gi|139394648 DNA polymerase theta [Homo sapiens] 230 5e-60
gi|24307909 ral guanine nucleotide dissociation stimulator isofo... 40 0.010
gi|108796058 ral guanine nucleotide dissociation stimulator isof... 40 0.010
gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sap... 37 0.083
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 34 0.54
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 34 0.70
gi|239757009 PREDICTED: ankyrin repeat domain 20 family, member ... 34 0.70
gi|239753324 PREDICTED: hypothetical protein [Homo sapiens] 34 0.70
gi|169218002 PREDICTED: hypothetical protein [Homo sapiens] 34 0.70
gi|239751523 PREDICTED: ankyrin repeat domain 20 family, member ... 34 0.70
gi|169163057 PREDICTED: hypothetical protein [Homo sapiens] 34 0.70
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 33 0.91
gi|74271888 lipin 3 [Homo sapiens] 33 1.2
gi|63079683 zinc fingers and homeoboxes 1 [Homo sapiens] 33 1.6
gi|63079680 zinc fingers and homeoboxes 1 [Homo sapiens] 33 1.6
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 32 2.0
gi|170650643 solute carrier family 22, member 23 isoform a [Homo... 32 2.0
gi|201861823 fermitin family homolog 2 isoform 3 [Homo sapiens] 32 2.0
gi|201861813 fermitin family homolog 2 isoform 2 [Homo sapiens] 32 2.0
gi|29789006 fermitin family homolog 2 isoform 1 [Homo sapiens] 32 2.0
gi|239756718 PREDICTED: ring finger protein 222 [Homo sapiens] 32 2.7
gi|239754569 PREDICTED: similar to hCG1793472 [Homo sapiens] 32 2.7
gi|239751213 PREDICTED: ring finger protein 222 [Homo sapiens] 32 2.7
gi|4503179 oral-facial-digital syndrome 1 [Homo sapiens] 32 2.7
gi|55749769 CWC22 spliceosome-associated protein homolog [Homo s... 32 2.7
gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens] 32 2.7
gi|226442736 ring finger protein 222 [Homo sapiens] 32 3.5
gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens] 32 3.5
gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens] 32 3.5
>gi|112420958 DNA-directed DNA polymerase nu [Homo sapiens]
Length = 900
Score = 1791 bits (4639), Expect = 0.0
Identities = 900/900 (100%), Positives = 900/900 (100%)
Query: 1 MENYEALVGFDLCNTPLSSVAQKIMSAMHSGDLVDSKTWGKSTETMEVINKSSVKYSVQL 60
MENYEALVGFDLCNTPLSSVAQKIMSAMHSGDLVDSKTWGKSTETMEVINKSSVKYSVQL
Sbjct: 1 MENYEALVGFDLCNTPLSSVAQKIMSAMHSGDLVDSKTWGKSTETMEVINKSSVKYSVQL 60
Query: 61 EDRKTQSPEKKDLKSLRSQTSRGSAKLSPQSFSVRLTDQLSADQKQKSISSLTLSSCLIP 120
EDRKTQSPEKKDLKSLRSQTSRGSAKLSPQSFSVRLTDQLSADQKQKSISSLTLSSCLIP
Sbjct: 61 EDRKTQSPEKKDLKSLRSQTSRGSAKLSPQSFSVRLTDQLSADQKQKSISSLTLSSCLIP 120
Query: 121 QYNQEASVLQKKGHKRKHFLMENINNENKGSINLKRKHITYNNLSEKTSKQMALEEDTDD 180
QYNQEASVLQKKGHKRKHFLMENINNENKGSINLKRKHITYNNLSEKTSKQMALEEDTDD
Sbjct: 121 QYNQEASVLQKKGHKRKHFLMENINNENKGSINLKRKHITYNNLSEKTSKQMALEEDTDD 180
Query: 181 AEGYLNSGNSGALKKHFCDIRHLDDWAKSQLIEMLKQAAALVITVMYTDGSTQLGADQTP 240
AEGYLNSGNSGALKKHFCDIRHLDDWAKSQLIEMLKQAAALVITVMYTDGSTQLGADQTP
Sbjct: 181 AEGYLNSGNSGALKKHFCDIRHLDDWAKSQLIEMLKQAAALVITVMYTDGSTQLGADQTP 240
Query: 241 VSSVRGIVVLVKRQAEGGHGCPDAPACGPVLEGFVSDDPCIYIQIEHSAIWDQEQEAHQQ 300
VSSVRGIVVLVKRQAEGGHGCPDAPACGPVLEGFVSDDPCIYIQIEHSAIWDQEQEAHQQ
Sbjct: 241 VSSVRGIVVLVKRQAEGGHGCPDAPACGPVLEGFVSDDPCIYIQIEHSAIWDQEQEAHQQ 300
Query: 301 FARNVLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADFIGLDPRIAAWLIDPSD 360
FARNVLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADFIGLDPRIAAWLIDPSD
Sbjct: 301 FARNVLFQTMKCKCPVICFNAKDFVRIVLQFFGNDGSWKHVADFIGLDPRIAAWLIDPSD 360
Query: 361 ATPSFEDLVEKYCEKSITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGL 420
ATPSFEDLVEKYCEKSITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGL
Sbjct: 361 ATPSFEDLVEKYCEKSITVKVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGL 420
Query: 421 WQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITS 480
WQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITS
Sbjct: 421 WQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITS 480
Query: 481 NNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHK 540
NNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHK
Sbjct: 481 NNQLREILFGKLKLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHK 540
Query: 541 IKSTFVDGLLACMKKGSISSTWNQTGTVTGRLSAKHPNIQGISKHPIQITTPKNFKGKED 600
IKSTFVDGLLACMKKGSISSTWNQTGTVTGRLSAKHPNIQGISKHPIQITTPKNFKGKED
Sbjct: 541 IKSTFVDGLLACMKKGSISSTWNQTGTVTGRLSAKHPNIQGISKHPIQITTPKNFKGKED 600
Query: 601 KILTISPRAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQ 660
KILTISPRAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQ
Sbjct: 601 KILTISPRAMFVSSKGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQ 660
Query: 661 WKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKYKKIKD 720
WKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKYKKIKD
Sbjct: 661 WKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKYKKIKD 720
Query: 721 FARAAIAQCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAM 780
FARAAIAQCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAM
Sbjct: 721 FARAAIAQCHQTGCVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAM 780
Query: 781 IHVFTAVAASHTLTARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQV 840
IHVFTAVAASHTLTARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQV
Sbjct: 781 IHVFTAVAASHTLTARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQV 840
Query: 841 PLKVSLSAGRSWGHLVPLQEAWGPPPGPCRTESPSNSLAAPGSPASTQPPPLHFSPSFCL 900
PLKVSLSAGRSWGHLVPLQEAWGPPPGPCRTESPSNSLAAPGSPASTQPPPLHFSPSFCL
Sbjct: 841 PLKVSLSAGRSWGHLVPLQEAWGPPPGPCRTESPSNSLAAPGSPASTQPPPLHFSPSFCL 900
>gi|139394648 DNA polymerase theta [Homo sapiens]
Length = 2590
Score = 230 bits (586), Expect = 5e-60
Identities = 180/611 (29%), Positives = 289/611 (47%), Gaps = 116/611 (18%)
Query: 348 DPRIAAWLIDPSDATPSFEDLVEKYC--EKSITVKVNSTYGNSSRNIVNQNVRENLKTLY 405
DP++A WL+DP P+ +V + E + + ++ G S + N Y
Sbjct: 1988 DPKVACWLLDPDSQEPTLHSIVTSFLPHELPLLEGMETSQGIQSLGL---NAGSEHSGRY 2044
Query: 406 RLTMD----------LCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEKTSA 455
R +++ L S L+ L +FR +E+P LA++E + I + E E
Sbjct: 2045 RASVESILIFNSMNQLNSLLQKENLQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKH 2104
Query: 456 LLGARLKELEQEAHFVAGERFLITSNNQLREILFGKLKL-------------HLLSQRNS 502
++ A+L +E +A+ +AG F TS++ + E+LF +LKL L S R
Sbjct: 2105 IMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRG 2164
Query: 503 LP---RTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLL--ACMKKG- 556
+ + L + STS+ VLN L+ LHPLP +ILE+R++ + V L C+
Sbjct: 2165 IDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLILEWRRITNAITKVVFPLQREKCLNPFL 2224
Query: 557 SISSTW--NQTGTVTGRLSAKHPNIQGISKHPIQITTPKNF-----------------KG 597
+ + +Q+ T TGR++ PNIQ + + +I P +G
Sbjct: 2225 GMERIYPVSQSHTATGRITFTEPNIQNVPR-DFEIKMPTLVGESPPSQAVGKGLLPMGRG 2283
Query: 598 KEDKILTISPRAM---------------------FVSSKGHTFLAADFSQIELRILTHLS 636
K K +++PR FV G + LAAD+SQ+ELRIL HLS
Sbjct: 2284 KYKKGFSVNPRCQAQMEERAADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLS 2343
Query: 637 GDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGKERLAAC 696
D L+++ DVF ++ ++WK + E V R+Q K++ Y ++YG G + L
Sbjct: 2344 HDRRLIQVLNTGA--DVFRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQ 2401
Query: 697 LGVPIQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHAHDQQLR 756
+G+ +AA +++SF +Y I F + C + G V +I+GRRR LP I ++ +
Sbjct: 2402 MGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRK 2461
Query: 757 AQAERQAVNFVVQGSAADLCKLAMIHV------FTAVAASH-----------TLTAR--- 796
A AERQA+N +VQGSAAD+ K+A +++ F + SH T +R
Sbjct: 2462 AHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLSRKRK 2521
Query: 797 ------------LVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKV 844
+ Q+HDELL+EV + + + A +V+ MES ++L V LKV
Sbjct: 2522 LQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMES-------AVKLSVKLKV 2574
Query: 845 SLSAGRSWGHL 855
+ G SWG L
Sbjct: 2575 KVKIGASWGEL 2585
>gi|24307909 ral guanine nucleotide dissociation stimulator isoform
1 [Homo sapiens]
Length = 914
Score = 40.0 bits (92), Expect = 0.010
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 28 MHSGDLVDS---KTWGKSTETMEVINKSSVKYSVQLEDRK------TQSPEKKDLKSLRS 78
+ SGD+ D+ + G S+ +E IN S V S +++K SPE + S S
Sbjct: 698 LSSGDIADALSVHSAGSSSSDVEEINISFVPESPDGQEKKFWESASQSSPETSGISSASS 757
Query: 79 QTSRGSAKLSPQSFSVRLTDQLSADQKQKSISSLTLSSCLIPQYNQE 125
TS SA +P + + ++S+S L SS +P YNQ+
Sbjct: 758 STSSSSASTTPVA---------ATRTHKRSVSGLCNSSSALPLYNQQ 795
>gi|108796058 ral guanine nucleotide dissociation stimulator isoform
2 [Homo sapiens]
Length = 859
Score = 40.0 bits (92), Expect = 0.010
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 18/107 (16%)
Query: 28 MHSGDLVDS---KTWGKSTETMEVINKSSVKYSVQLEDRK------TQSPEKKDLKSLRS 78
+ SGD+ D+ + G S+ +E IN S V S +++K SPE + S S
Sbjct: 643 LSSGDIADALSVHSAGSSSSDVEEINISFVPESPDGQEKKFWESASQSSPETSGISSASS 702
Query: 79 QTSRGSAKLSPQSFSVRLTDQLSADQKQKSISSLTLSSCLIPQYNQE 125
TS SA +P + + ++S+S L SS +P YNQ+
Sbjct: 703 STSSSSASTTPVA---------ATRTHKRSVSGLCNSSSALPLYNQQ 740
>gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo
sapiens]
Length = 1555
Score = 37.0 bits (84), Expect = 0.083
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 27/154 (17%)
Query: 58 VQLEDRKTQSPEKKDLKSLRSQTSRGSAKLSPQS-----FSVRLTDQLSADQKQKSISSL 112
VQ +D T+ EK+ K RS T + S SP+S S + D+ S ++Q+S+S
Sbjct: 454 VQKQDTITEESEKQGTKPGRSSTRKRSRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMS-- 511
Query: 113 TLSSCLIPQYNQEASVLQKKGHKRKHFLMENINNENKGSINLKRK-----------HITY 161
P +A +++ G K+ H ME ++ N KR T
Sbjct: 512 -------PTSTPKAGKIRQSGAKQSH--MEEFTPPSREDRNAKRSTKQDIRDPRRMKKTE 562
Query: 162 NNLSEKTSKQMALEEDTDDAEGYLNSGNSGALKK 195
++T+ Q + + T+ E N +S + K+
Sbjct: 563 EERPQETTNQHSTKSGTEPKENVENWQSSKSAKR 596
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 34.3 bits (77), Expect = 0.54
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Query: 73 LKSLRSQTSRGSAKLSPQSFSVRLTDQLSADQKQKSISSLTLSSCLIPQYNQEASVLQKK 132
L S +S GS+ S + R + A +K L+ + +P+ ++E V++K
Sbjct: 573 LTSESDYSSEGSSVESLKPVRKRQEHRKRASLSEKKSPFLSSAEGAVPKLDKEGKVVKKH 632
Query: 133 GHKRKHFLMENINNENKG----SINLKRKHITYN--NLSEKTSKQMALEED 177
K KH N+ KG S LK K TY + +K+ K + LE D
Sbjct: 633 KTKHKH------KNKEKGQCSISQELKLKSFTYEYEDSKQKSDKAILLEND 677
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 33.9 bits (76), Expect = 0.70
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 858 LQEAWGP---PPGPCRTESPSNSLAAPGSP 884
LQ AW P PP CR + P NS A P SP
Sbjct: 155 LQPAWAPKLQPPSVCRQQPPGNSRARPHSP 184
>gi|239757009 PREDICTED: ankyrin repeat domain 20 family, member A5
[Homo sapiens]
Length = 823
Score = 33.9 bits (76), Expect = 0.70
Identities = 41/190 (21%), Positives = 84/190 (44%), Gaps = 25/190 (13%)
Query: 47 EVINKSSVKYSVQLEDRKTQSP--------EKKDLKSLRSQT----SRGSAKLSPQSFSV 94
E+I K++ Y +L D K ++ EK+ K L ++ SR +A +S S +V
Sbjct: 565 EMITKTAFWYQQELNDLKAENTRLNSELLKEKESKKKLEAEIESYQSRLAAAISKHSENV 624
Query: 95 RLTDQLS-ADQKQKSISSLTLSSCLIPQYN-------QEASVLQKKGHKRKHFLMENINN 146
+ L A ++ + IS S I + ++ S +Q K + K + +
Sbjct: 625 KTERNLKLALERTQDISEQVKMSSDISEIEDKNXFLTEQLSKMQIKFNTLKDKFRKTRDT 684
Query: 147 ENKGSINLKRKHITYNNLSEKTSKQMALEEDTDDAEGYLN--SGNSGALKKHFCDIRHLD 204
K S+ L+ N+LS+ + ++E AE ++ +G +++ C ++ +
Sbjct: 685 LRKKSLALET---VQNDLSQTQQQIKEMKEMYQSAEAKVSKSTGKWNCVEERICQLQREN 741
Query: 205 DWAKSQLIEM 214
W + QL+++
Sbjct: 742 PWLEQQLVDV 751
>gi|239753324 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 33.9 bits (76), Expect = 0.70
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 858 LQEAWGP---PPGPCRTESPSNSLAAPGSP 884
LQ AW P PP CR + P NS A P SP
Sbjct: 175 LQPAWAPKLQPPSVCRQQPPGNSRARPHSP 204
>gi|169218002 PREDICTED: hypothetical protein [Homo sapiens]
Length = 218
Score = 33.9 bits (76), Expect = 0.70
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 858 LQEAWGP---PPGPCRTESPSNSLAAPGSP 884
LQ AW P PP CR + P NS A P SP
Sbjct: 148 LQPAWAPKLQPPSVCRQQPPGNSRARPHSP 177
>gi|239751523 PREDICTED: ankyrin repeat domain 20 family, member A5
[Homo sapiens]
Length = 823
Score = 33.9 bits (76), Expect = 0.70
Identities = 41/190 (21%), Positives = 84/190 (44%), Gaps = 25/190 (13%)
Query: 47 EVINKSSVKYSVQLEDRKTQSP--------EKKDLKSLRSQT----SRGSAKLSPQSFSV 94
E+I K++ Y +L D K ++ EK+ K L ++ SR +A +S S +V
Sbjct: 565 EMITKTAFWYQQELNDLKAENTRLNSELLKEKESKKKLEAEIESYQSRLAAAISKHSENV 624
Query: 95 RLTDQLS-ADQKQKSISSLTLSSCLIPQYN-------QEASVLQKKGHKRKHFLMENINN 146
+ L A ++ + IS S I + ++ S +Q K + K + +
Sbjct: 625 KTERNLKLALERTQDISEQVKMSSDISEIEDKNXFLTEQLSKMQIKFNTLKDKFRKTRDT 684
Query: 147 ENKGSINLKRKHITYNNLSEKTSKQMALEEDTDDAEGYLN--SGNSGALKKHFCDIRHLD 204
K S+ L+ N+LS+ + ++E AE ++ +G +++ C ++ +
Sbjct: 685 LRKKSLALET---VQNDLSQTQQQIKEMKEMYQSAEAKVSKSTGKWNCVEERICQLQREN 741
Query: 205 DWAKSQLIEM 214
W + QL+++
Sbjct: 742 PWLEQQLVDV 751
>gi|169163057 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 33.9 bits (76), Expect = 0.70
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 858 LQEAWGP---PPGPCRTESPSNSLAAPGSP 884
LQ AW P PP CR + P NS A P SP
Sbjct: 175 LQPAWAPKLQPPSVCRQQPPGNSRARPHSP 204
>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
Length = 796
Score = 33.5 bits (75), Expect = 0.91
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 812 PQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSWGHLVPLQEAWGPPPGPCRT 871
P+ P+ A + E ++ Q + Q + LK+++SAG G P A GPPP P
Sbjct: 548 PEPPDSAEGALKLGEEQQRQQWMANQSEA-LKLTMSAG---GFAAPGHAAGGPPPPPPPL 603
Query: 872 ESPSNSLAAPGSPASTQPPPL 892
SN P S P P+
Sbjct: 604 GPHSNRTTPPESAPQNGPSPM 624
>gi|74271888 lipin 3 [Homo sapiens]
Length = 851
Score = 33.1 bits (74), Expect = 1.2
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 806 LFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSWGHLVPLQEAWGPP 865
++ D + P A+L + S + LE++ P + + W AWG
Sbjct: 200 IYPYSDGEWPPQASLSAGELTSPKSDSELEVRTPEPSPLRAESHMQW--------AWGRL 251
Query: 866 PGPCRTESPSNSLAAPGSPASTQPP 890
P R E P +S+ G +T PP
Sbjct: 252 PKVARAERPESSVVLEGRAGATSPP 276
>gi|63079683 zinc fingers and homeoboxes 1 [Homo sapiens]
Length = 873
Score = 32.7 bits (73), Expect = 1.6
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 11/163 (6%)
Query: 41 KSTETMEVINKSSVKYSVQLEDRKTQSPEKKDLKSLRSQTSRGSAKLSPQSFSVRLTDQL 100
KS + + + N SS + D T+SP + Q+ +PQ F + +QL
Sbjct: 523 KSNQCLHLNNDSSTTIIIDSSDETTESPTVGTAQP--KQSWNPFPDFTPQKFKEKTAEQL 580
Query: 101 SADQKQKSISSLTLSSCLIPQYNQEASVLQKKGHKRKHFLMENINNENKGSINLKRKHIT 160
+ + + L+S ++ Q K +R+ ++ E K S LK + +
Sbjct: 581 ------RVLQASFLNSSVLTDEELNRLRAQTKLTRRE---IDAWFTEKKKSKALKEEKME 631
Query: 161 YNNLSEKTSKQMALEEDTDDAEGYLNSGNSGALKKHFCDIRHL 203
+ + +SK+ A E D G SG++G + K + H+
Sbjct: 632 IDESNAGSSKEEAGETSPADESGAPKSGSTGKICKKTPEQLHM 674
>gi|63079680 zinc fingers and homeoboxes 1 [Homo sapiens]
Length = 873
Score = 32.7 bits (73), Expect = 1.6
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 11/163 (6%)
Query: 41 KSTETMEVINKSSVKYSVQLEDRKTQSPEKKDLKSLRSQTSRGSAKLSPQSFSVRLTDQL 100
KS + + + N SS + D T+SP + Q+ +PQ F + +QL
Sbjct: 523 KSNQCLHLNNDSSTTIIIDSSDETTESPTVGTAQP--KQSWNPFPDFTPQKFKEKTAEQL 580
Query: 101 SADQKQKSISSLTLSSCLIPQYNQEASVLQKKGHKRKHFLMENINNENKGSINLKRKHIT 160
+ + + L+S ++ Q K +R+ ++ E K S LK + +
Sbjct: 581 ------RVLQASFLNSSVLTDEELNRLRAQTKLTRRE---IDAWFTEKKKSKALKEEKME 631
Query: 161 YNNLSEKTSKQMALEEDTDDAEGYLNSGNSGALKKHFCDIRHL 203
+ + +SK+ A E D G SG++G + K + H+
Sbjct: 632 IDESNAGSSKEEAGETSPADESGAPKSGSTGKICKKTPEQLHM 674
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 32.3 bits (72), Expect = 2.0
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 13/142 (9%)
Query: 62 DRKTQSPEKKDLKSLRSQTSRGSAKLSPQSFSVRLTDQLSADQKQKSISSLTLSSCLIPQ 121
DR + +KKD K + Q SR K S S + S+ + SS + S+
Sbjct: 229 DRLEKKKKKKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETSESSSESESN----- 283
Query: 122 YNQEASVLQKKGHKRKHFLMENINNENKGSINLKRKH----ITYNNLSEKTSKQMALEED 177
N+E + +KK K K N ++E K ++ H +++N + K L+ +
Sbjct: 284 -NKEKKIQRKKRKKNKCSGHNNSDSEEKDKSKKRKLHEELSSSHHNREKAKEKPRFLKHE 342
Query: 178 T---DDAEGYLNSGNSGALKKH 196
+ D + +S KH
Sbjct: 343 SSREDSKWSHSDSDKKSRTHKH 364
>gi|170650643 solute carrier family 22, member 23 isoform a [Homo
sapiens]
Length = 686
Score = 32.3 bits (72), Expect = 2.0
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 857 PLQEAWGPPPGPCRTESPSNSLAAPGSPASTQP-PPLH 893
P +E PPG +P A PG A QP PPLH
Sbjct: 20 PAEENGSLPPGDAAASAPLGGRAGPGGGAEIQPLPPLH 57
>gi|201861823 fermitin family homolog 2 isoform 3 [Homo sapiens]
Length = 633
Score = 32.3 bits (72), Expect = 2.0
Identities = 61/292 (20%), Positives = 111/292 (38%), Gaps = 59/292 (20%)
Query: 380 KVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLELPLIPILAVME 439
K+N + +SSR+++ Q+V+EN L R K Y + L + I L
Sbjct: 247 KINQGWLDSSRSLMEQDVKENEALLLR--------FKYYSFFDLNPKYDAIRINQLYEQA 298
Query: 440 SHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITSNNQLREI--LFGKLKLHLL 497
AI + + E + ++ A L+ + + E L S+ ++ E+ L++ L
Sbjct: 299 KWAILLEEIECTEEEMMMFAALQYHINKLSIMTSENHLNNSDKEVDEVDAALSDLEITLE 358
Query: 498 SQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS 557
+ S + P ++ + + P + Y+Q TF D ++C K
Sbjct: 359 GGKTSTILGDITSIPELADYI----KVFKPKKLTLKGYKQYW---CTFKDTSISCYKSKE 411
Query: 558 ISSTWNQTGTVTGRLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISP---------- 607
SS GT A N++G ++T N G++ I + P
Sbjct: 412 ESS-----GT-----PAHQMNLRG-----CEVTPDVNISGQKFNIKLLIPVAEGMNEIWL 456
Query: 608 ------------RAMFVSSKGHTFLAADFSQIELRILT-----HLSGDPELL 642
A ++SKG T + ++ IL+ HL+ DP+L+
Sbjct: 457 RCDNEKQYAHWMAACRLASKGKTMADSSYNLEVQNILSFLKMQHLNPDPQLI 508
>gi|201861813 fermitin family homolog 2 isoform 2 [Homo sapiens]
Length = 687
Score = 32.3 bits (72), Expect = 2.0
Identities = 61/292 (20%), Positives = 111/292 (38%), Gaps = 59/292 (20%)
Query: 380 KVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLELPLIPILAVME 439
K+N + +SSR+++ Q+V+EN L R K Y + L + I L
Sbjct: 247 KINQGWLDSSRSLMEQDVKENEALLLR--------FKYYSFFDLNPKYDAIRINQLYEQA 298
Query: 440 SHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITSNNQLREI--LFGKLKLHLL 497
AI + + E + ++ A L+ + + E L S+ ++ E+ L++ L
Sbjct: 299 KWAILLEEIECTEEEMMMFAALQYHINKLSIMTSENHLNNSDKEVDEVDAALSDLEITLE 358
Query: 498 SQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS 557
+ S + P ++ + + P + Y+Q TF D ++C K
Sbjct: 359 GGKTSTILGDITSIPELADYI----KVFKPKKLTLKGYKQYW---CTFKDTSISCYKSKE 411
Query: 558 ISSTWNQTGTVTGRLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISP---------- 607
SS GT A N++G ++T N G++ I + P
Sbjct: 412 ESS-----GT-----PAHQMNLRG-----CEVTPDVNISGQKFNIKLLIPVAEGMNEIWL 456
Query: 608 ------------RAMFVSSKGHTFLAADFSQIELRILT-----HLSGDPELL 642
A ++SKG T + ++ IL+ HL+ DP+L+
Sbjct: 457 RCDNEKQYAHWMAACRLASKGKTMADSSYNLEVQNILSFLKMQHLNPDPQLI 508
>gi|29789006 fermitin family homolog 2 isoform 1 [Homo sapiens]
Length = 680
Score = 32.3 bits (72), Expect = 2.0
Identities = 61/292 (20%), Positives = 111/292 (38%), Gaps = 59/292 (20%)
Query: 380 KVNSTYGNSSRNIVNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLELPLIPILAVME 439
K+N + +SSR+++ Q+V+EN L R K Y + L + I L
Sbjct: 247 KINQGWLDSSRSLMEQDVKENEALLLR--------FKYYSFFDLNPKYDAIRINQLYEQA 298
Query: 440 SHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITSNNQLREI--LFGKLKLHLL 497
AI + + E + ++ A L+ + + E L S+ ++ E+ L++ L
Sbjct: 299 KWAILLEEIECTEEEMMMFAALQYHINKLSIMTSENHLNNSDKEVDEVDAALSDLEITLE 358
Query: 498 SQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS 557
+ S + P ++ + + P + Y+Q TF D ++C K
Sbjct: 359 GGKTSTILGDITSIPELADYI----KVFKPKKLTLKGYKQYW---CTFKDTSISCYKSKE 411
Query: 558 ISSTWNQTGTVTGRLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISP---------- 607
SS GT A N++G ++T N G++ I + P
Sbjct: 412 ESS-----GT-----PAHQMNLRG-----CEVTPDVNISGQKFNIKLLIPVAEGMNEIWL 456
Query: 608 ------------RAMFVSSKGHTFLAADFSQIELRILT-----HLSGDPELL 642
A ++SKG T + ++ IL+ HL+ DP+L+
Sbjct: 457 RCDNEKQYAHWMAACRLASKGKTMADSSYNLEVQNILSFLKMQHLNPDPQLI 508
>gi|239756718 PREDICTED: ring finger protein 222 [Homo sapiens]
Length = 220
Score = 32.0 bits (71), Expect = 2.7
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 12/50 (24%)
Query: 851 SWGHLVPL---QEAWGPPPGPCRTESPSNSLAAPGSPASTQPPPLHFSPS 897
S GH PL AW PPPG R PGSP + PL PS
Sbjct: 102 SLGHTNPLAASSSAWRPPPGQAR---------PPGSPGQSAQLPLDLLPS 142
>gi|239754569 PREDICTED: similar to hCG1793472 [Homo sapiens]
Length = 219
Score = 32.0 bits (71), Expect = 2.7
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 851 SWGHLVPLQEAWG----PPPGPCRTESPSNSLAAPGSPASTQPPPLHFSPSFCL 900
SWG+ P +E PP G CR SP A PG PL PS CL
Sbjct: 27 SWGNAPPCREPLRAQLLPPSGVCR-RSPCLRAAFPGPAPPVSQWPLSAQPSSCL 79
>gi|239751213 PREDICTED: ring finger protein 222 [Homo sapiens]
Length = 220
Score = 32.0 bits (71), Expect = 2.7
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 12/50 (24%)
Query: 851 SWGHLVPL---QEAWGPPPGPCRTESPSNSLAAPGSPASTQPPPLHFSPS 897
S GH PL AW PPPG R PGSP + PL PS
Sbjct: 102 SLGHTNPLAASSSAWRPPPGQAR---------PPGSPGQSAQLPLDLLPS 142
>gi|4503179 oral-facial-digital syndrome 1 [Homo sapiens]
Length = 1012
Score = 32.0 bits (71), Expect = 2.7
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 16/114 (14%)
Query: 442 AIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITS-----NNQLREI----LFGKL 492
AI KEE+ ++ R+KELE E V + IT N +++E+ L +
Sbjct: 388 AINSKKEELNQSVN----RVKELELELESVKAQSLAITKQNHMLNEKVKEMSDYSLLKEE 443
Query: 493 KLHLLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFV 546
KL LL+Q N L + L++ + + +LN L P P++ + +++ K + V
Sbjct: 444 KLELLAQ-NKLLKQQLEESRNENLRLLNRL--AQPAPELAVFQKELRKAEKAIV 494
>gi|55749769 CWC22 spliceosome-associated protein homolog [Homo
sapiens]
Length = 908
Score = 32.0 bits (71), Expect = 2.7
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Query: 69 EKKDLKSLRSQTSRGSAKLSPQSFSVRLTDQLSADQKQKSISSLTLSSCLIPQYNQEASV 128
+K D++ +S S S+ S +D S+D +S S + SS + + A+
Sbjct: 657 QKPDVEQNKSSPSSSSSASSSSESDSSDSDSDSSDSSSESSSEESDSSSISSHSSASAND 716
Query: 129 LQKKGH--KRKHFLMENINNENKGSINLKRKHITYNNLSEKTSKQMALEEDTD 179
++KKGH R + + I N+ K + + + +T ++ E+ D
Sbjct: 717 VRKKGHGKTRSKEVDKLIRNQQTNDRKQKERRQEHGHQETRTERERRSEKHRD 769
>gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]
Length = 981
Score = 32.0 bits (71), Expect = 2.7
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 856 VPLQEAWGPPPGPCRTESPSNSLAAPGSPASTQPPPLHFSP 896
V Q A G PP P T S S A PA+ PPL + P
Sbjct: 422 VTTQRALGQPPPPEPTASSMASAPASSPPANATAPPLRWGP 462
>gi|226442736 ring finger protein 222 [Homo sapiens]
Length = 220
Score = 31.6 bits (70), Expect = 3.5
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 12/50 (24%)
Query: 851 SWGHLVPL---QEAWGPPPGPCRTESPSNSLAAPGSPASTQPPPLHFSPS 897
S GH PL AW PPPG R PGSP + PL PS
Sbjct: 102 SLGHTNPLAASSPAWRPPPGQAR---------PPGSPGQSAQLPLDLLPS 142
>gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens]
Length = 220
Score = 31.6 bits (70), Expect = 3.5
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 12/50 (24%)
Query: 851 SWGHLVPL---QEAWGPPPGPCRTESPSNSLAAPGSPASTQPPPLHFSPS 897
S GH PL AW PPPG R PGSP + PL PS
Sbjct: 102 SLGHTNPLAASSPAWRPPPGQAR---------PPGSPGQSAQLPLDLLPS 142
>gi|239745068 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 618
Score = 31.6 bits (70), Expect = 3.5
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 848 AGRSWGHLVPLQEAWGPPPGPCRTESPSNSLAAPGSPASTQPPPLHFSPS 897
A R GH P W PP + PS P P+S PPP PS
Sbjct: 32 AARRGGH--PAHFCWSRPPVSRERDDPSAPRPVPALPSSPSPPPPVRRPS 79
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,919,570
Number of Sequences: 37866
Number of extensions: 1560624
Number of successful extensions: 7617
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 7559
Number of HSP's gapped (non-prelim): 90
length of query: 900
length of database: 18,247,518
effective HSP length: 111
effective length of query: 789
effective length of database: 14,044,392
effective search space: 11081025288
effective search space used: 11081025288
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.