CLCNKA 962

Name: CLCNKA	Sequence: fasta or formatted (686aa)		NCBI GI: 112382222
Description: chloride channel Ka isoform 2		Referenced in: Chloride Channels Auditory and Vestibular Functions Kidney
Other entries for this name: alt prot [687aa] chloride channel Ka isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.0 62 4 C cysteine 1.6 11 1 D aspartate 2.2 15 1 E glutamate 4.7 32 2 F phenylalanine 6.3 43 3 G glycine 7.6 52 2 H histidine 2.6 18 2 I isoleucine 5.4 37 2 K lysine 3.2 22 2 L leucine 12.2 84 3 M methionine 2.6 18 1 N asparagine 2.3 16 1 P proline 5.7 39 2 Q glutamine 3.5 24 1 R arginine 3.8 26 2 S serine 7.6 52 2 T threonine 6.9 47 3 V valine 8.2 56 2 W tryptophan 1.9 13 2 Y tyrosine 2.8 19 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 chloride channel Ka isoform 2 CLCNKA 0.997 chloride channel Ka isoform 1 CLCNKB 0.915 chloride channel Kb CLCN2 0.383 chloride channel 2 CLCN1 0.345 chloride channel 1, skeletal muscle CLCN4 0.125 chloride channel 4 CLCN5 0.119 chloride channel 5 isoform a CLCN5 0.119 chloride channel 5 isoform a CLCN5 0.119 chloride channel 5 isoform b CLCN3 0.114 chloride channel 3 isoform b CLCN3 0.112 chloride channel 3 isoform e CLCN7 0.090 chloride channel 7 isoform b CLCN7 0.090 chloride channel 7 isoform a CLCN6 0.070 chloride channel 6 isoform ClC-6a CLCN6 0.036 chloride channel 6 isoform ClC-6c CLCN6 0.017 chloride channel 6 isoform ClC-6d CLCN6 0.017 chloride channel 6 isoform ClC-6b HUWE1 0.004 HECT, UBA and WWE domain containing 1 ELN 0.004 elastin isoform e precursor ELN 0.004 elastin isoform d precursor ELN 0.004 elastin isoform c precursor ELN 0.004 elastin isoform b precursor ELN 0.004 elastin isoform a precursor ARL17 0.004 ADP-ribosylation factor-like 17 isoform a ARL17P1 0.004 hypothetical protein LOC51326 isoform a ATP2B1 0.004 plasma membrane calcium ATPase 1 isoform 1a ATP2B1 0.004 plasma membrane calcium ATPase 1 isoform 1b PGS1 0.004 phosphatidylglycerophosphate synthase 1 STIM2 0.004 stromal interaction molecule 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.