Guide to the Human Genome
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Name: PGS1 Sequence: fasta or formatted (556aa) NCBI GI: 84508631
Description:

phosphatidylglycerophosphate synthase 1

Referenced in:

Lipid Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         45           6
 C cysteine            1.4          8           2
 D aspartate           4.0         22           2
 E glutamate           5.6         31           1
 F phenylalanine       4.9         27           2
 G glycine             6.3         35           1
 H histidine           2.2         12           1
 I isoleucine          3.8         21           1
 K lysine              3.1         17           1
 L leucine            13.1         73           3
 M methionine          1.8         10           1
 N asparagine          2.9         16           1
 P proline             5.2         29           2
 Q glutamine           6.5         36           3
 R arginine            8.1         45           3
 S serine              6.5         36           3
 T threonine           4.7         26           2
 V valine              7.7         43           2
 W tryptophan          1.4          8           1
 Y tyrosine            2.9         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphatidylglycerophosphate synthase 1 
DCP1B                 0.010   decapping enzyme Dcp1b 
LOC100293644          0.006   PREDICTED: hypothetical protein 
LOC100287563          0.006   PREDICTED: hypothetical protein 
LOC100287563          0.006   PREDICTED: hypothetical protein XP_002343733 
NCOR1                 0.006   nuclear receptor co-repressor 1 
LOC377711             0.005   PREDICTED: hypothetical protein LOC377711 isoform 5...
HEATR7A               0.005   HEAT repeat containing 7A isoform 1 
PER3                  0.005   period 3 
LOC100132663          0.005   PREDICTED: hypothetical protein 
LOC100131773          0.005   PREDICTED: similar to mCG116201 
LOC100132663          0.005   PREDICTED: hypothetical protein 
CLCNKA                0.005   chloride channel Ka isoform 1 
CLCNKA                0.005   chloride channel Ka isoform 2 
KLF1                  0.004   Kruppel-like factor 1 (erythroid) 
INTS10                0.004   integrator complex subunit 10 
OTOP1                 0.004   otopetrin 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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