Guide to the Human Genome
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Name: CLCN6 Sequence: fasta or formatted (308aa) NCBI GI: 12025673
Description:

chloride channel 6 isoform ClC-6d

Referenced in:

Chloride Channels

Other entries for this name:
alt prot [320aa] chloride channel 6 isoform ClC-6b
alt prot [353aa] chloride channel 6 isoform ClC-6c
alt prot [869aa] chloride channel 6 isoform ClC-6a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         14           2
 C cysteine            6.2         19           4
 D aspartate           2.9          9           1
 E glutamate           7.1         22           3
 F phenylalanine       6.5         20           2
 G glycine             9.4         29           2
 H histidine           1.6          5           1
 I isoleucine          3.6         11           1
 K lysine              3.9         12           2
 L leucine            13.6         42           2
 M methionine          1.3          4           1
 N asparagine          1.9          6           1
 P proline             4.5         14           1
 Q glutamine           2.9          9           1
 R arginine            6.2         19           2
 S serine              6.2         19           1
 T threonine           3.2         10           1
 V valine              9.7         30           2
 W tryptophan          2.3          7           1
 Y tyrosine            2.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chloride channel 6 isoform ClC-6d 
CLCN6                 0.985   chloride channel 6 isoform ClC-6b 
CLCN6                 0.742   chloride channel 6 isoform ClC-6a 
CLCN6                 0.742   chloride channel 6 isoform ClC-6c 
CLCN7                 0.248   chloride channel 7 isoform b 
CLCN7                 0.248   chloride channel 7 isoform a 
CLCN1                 0.077   chloride channel 1, skeletal muscle 
CLCN3                 0.071   chloride channel 3 isoform e 
CLCN3                 0.071   chloride channel 3 isoform b 
CLCN2                 0.068   chloride channel 2 
CLCN4                 0.066   chloride channel 4 
CLCN5                 0.058   chloride channel 5 isoform a 
CLCN5                 0.058   chloride channel 5 isoform a 
CLCN5                 0.058   chloride channel 5 isoform b 
CLCNKB                0.037   chloride channel Kb 
CLCNKA                0.037   chloride channel Ka isoform 1 
CLCNKA                0.037   chloride channel Ka isoform 2 
RGS20                 0.018   regulator of G-protein signaling 20 isoform b 
RGS20                 0.018   regulator of G-protein signaling 20 isoform a 
LOC100131830          0.016   PREDICTED: hypothetical protein 
LOC100131830          0.016   PREDICTED: hypothetical protein 
LOC100131830          0.016   PREDICTED: hypothetical protein 
DNAJC5                0.010   DnaJ (Hsp40) homolog, subfamily C, member 5 
DNAJC5B               0.010   DnaJ (Hsp40) homolog, subfamily C, member 5 beta [Ho...
TREML4                0.008   triggering receptor expressed on myeloid cells-like ...
LOC100293604          0.006   PREDICTED: hypothetical protein 
LOC100289721          0.006   PREDICTED: hypothetical protein XP_002347280 
LOC100287837          0.006   PREDICTED: hypothetical protein XP_002343157 
PCDH10                0.005   protocadherin 10 isoform 1 precursor 
PCDH10                0.005   protocadherin 10 isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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