Guide to the Human Genome
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Name: CLCN7 Sequence: fasta or formatted (781aa) NCBI GI: 167466160
Description:

chloride channel 7 isoform b

Referenced in:

Chloride Channels

Other entries for this name:
alt prot [805aa] chloride channel 7 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         65           3
 C cysteine            1.2          9           1
 D aspartate           3.8         30           2
 E glutamate           4.6         36           3
 F phenylalanine       5.9         46           2
 G glycine             8.2         64           3
 H histidine           2.2         17           1
 I isoleucine          6.0         47           1
 K lysine              3.7         29           2
 L leucine            11.4         89           3
 M methionine          2.6         20           2
 N asparagine          3.3         26           1
 P proline             4.9         38           2
 Q glutamine           2.7         21           1
 R arginine            5.9         46           3
 S serine              7.0         55           2
 T threonine           4.9         38           1
 V valine              9.3         73           3
 W tryptophan          1.4         11           1
 Y tyrosine            2.7         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chloride channel 7 isoform b 
CLCN7                 0.991   chloride channel 7 isoform a 
CLCN6                 0.330   chloride channel 6 isoform ClC-6a 
CLCN6                 0.172   chloride channel 6 isoform ClC-6c 
CLCN5                 0.155   chloride channel 5 isoform a 
CLCN5                 0.155   chloride channel 5 isoform a 
CLCN5                 0.155   chloride channel 5 isoform b 
CLCN4                 0.150   chloride channel 4 
CLCN3                 0.150   chloride channel 3 isoform b 
CLCN3                 0.146   chloride channel 3 isoform e 
CLCN2                 0.109   chloride channel 2 
CLCN1                 0.104   chloride channel 1, skeletal muscle 
CLCN6                 0.101   chloride channel 6 isoform ClC-6d 
CLCN6                 0.101   chloride channel 6 isoform ClC-6b 
CLCNKB                0.093   chloride channel Kb 
CLCNKA                0.080   chloride channel Ka isoform 1 
CLCNKA                0.079   chloride channel Ka isoform 2 
MLLT4                 0.005   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.005   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.005   myeloid/lymphoid or mixed-lineage leukemia (trithora...
SLITRK2               0.004   SLIT and NTRK-like family, member 2 
SLITRK2               0.004   SLIT and NTRK-like family, member 2 
SLITRK2               0.004   SLIT and NTRK-like family, member 2 
SLITRK2               0.004   SLIT and NTRK-like family, member 2 
SLITRK2               0.004   SLIT and NTRK-like family, member 2 
SLITRK2               0.004   SLIT and NTRK-like family, member 2 
SLITRK2               0.004   SLIT and NTRK-like family, member 2 
SLITRK2               0.004   SLIT and NTRK-like family, member 2 
SLITRK2               0.004   SLIT and NTRK-like family, member 2 
DAXX                  0.004   death-domain associated protein isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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