Guide to the Human Genome
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Name: CLCN5 Sequence: fasta or formatted (816aa) NCBI GI: 189217921
Description:

chloride channel 5 isoform a

Referenced in:

Chloride Channels
Kidney

Other entries for this name:
alt mRNA [816aa] chloride channel 5 isoform a
alt prot [746aa] chloride channel 5 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         58           5
 C cysteine            2.1         17           3
 D aspartate           4.8         39           2
 E glutamate           5.4         44           2
 F phenylalanine       5.6         46           2
 G glycine             7.8         64           3
 H histidine           2.0         16           1
 I isoleucine          7.1         58           2
 K lysine              4.0         33           2
 L leucine            10.9         89           2
 M methionine          3.1         25           1
 N asparagine          3.4         28           1
 P proline             4.3         35           2
 Q glutamine           2.0         16           2
 R arginine            4.7         38           2
 S serine              7.4         60           3
 T threonine           6.0         49           2
 V valine              7.1         58           3
 W tryptophan          2.3         19           1
 Y tyrosine            2.9         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chloride channel 5 isoform a 
CLCN5                 1.000   chloride channel 5 isoform a 
CLCN5                 0.913   chloride channel 5 isoform b 
CLCN3                 0.753   chloride channel 3 isoform b 
CLCN4                 0.743   chloride channel 4 
CLCN3                 0.737   chloride channel 3 isoform e 
CLCN7                 0.145   chloride channel 7 isoform b 
CLCN7                 0.145   chloride channel 7 isoform a 
CLCN2                 0.122   chloride channel 2 
CLCN6                 0.120   chloride channel 6 isoform ClC-6a 
CLCN1                 0.113   chloride channel 1, skeletal muscle 
CLCNKA                0.099   chloride channel Ka isoform 1 
CLCNKA                0.099   chloride channel Ka isoform 2 
CLCNKB                0.099   chloride channel Kb 
CLCN6                 0.051   chloride channel 6 isoform ClC-6c 
CLCN6                 0.022   chloride channel 6 isoform ClC-6d 
CLCN6                 0.022   chloride channel 6 isoform ClC-6b 
RBM6                  0.006   RNA binding motif protein 6 
TSPAN3                0.004   transmembrane 4 superfamily member 8 isoform 2 [Homo...
TSPAN3                0.004   transmembrane 4 superfamily member 8 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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