Guide to the Human Genome
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Search of human proteins with 169214011

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169214011 PREDICTED: hypothetical protein [Homo sapiens]
         (186 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169214011 PREDICTED: hypothetical protein [Homo sapiens]           401   e-112
gi|113428768 PREDICTED: hypothetical protein [Homo sapiens]           401   e-112
gi|113428351 PREDICTED: hypothetical protein [Homo sapiens]           400   e-112
gi|239755187 PREDICTED: similar to hemicentin 2 [Homo sapiens]         47   7e-06
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]                  44   1e-04
gi|122056628 prion protein preproprotein [Homo sapiens]                41   5e-04
gi|122056625 prion protein preproprotein [Homo sapiens]                41   5e-04
gi|122056623 prion protein preproprotein [Homo sapiens]                41   5e-04
gi|34335270 prion protein preproprotein [Homo sapiens]                 41   5e-04
gi|4506113 prion protein preproprotein [Homo sapiens]                  41   5e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni...    41   5e-04
gi|239757686 PREDICTED: hypothetical protein [Homo sapiens]            40   0.001
gi|239752176 PREDICTED: hypothetical protein [Homo sapiens]            40   0.001
gi|85815829 SH3-domain binding protein 1 [Homo sapiens]                40   0.002
gi|239756943 PREDICTED: hypothetical protein [Homo sapiens]            38   0.004
gi|239751443 PREDICTED: hypothetical protein [Homo sapiens]            38   0.004
gi|239745948 PREDICTED: hypothetical protein XP_002343622 [Homo ...    38   0.004
gi|7706469 Kruppel-like factor [Homo sapiens]                          38   0.004
gi|54607124 RNA binding motif protein 15B [Homo sapiens]               38   0.004
gi|38194229 kelch-like 17 [Homo sapiens]                               38   0.004
gi|146134388 YLP motif containing 1 [Homo sapiens]                     38   0.004
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ...    38   0.006
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ...    38   0.006
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ...    38   0.006
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ...    38   0.006
gi|115430223 galectin 3 [Homo sapiens]                                 38   0.006
gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]            37   0.008
gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo ...    37   0.008
gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo ...    37   0.008
gi|38788219 zinc finger protein 428 [Homo sapiens]                     37   0.010

>gi|169214011 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 186

 Score =  401 bits (1030), Expect = e-112
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLSSTDPTHLGLPESVASVTVPIR 60
           MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLSSTDPTHLGLPESVASVTVPIR
Sbjct: 1   MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLSSTDPTHLGLPESVASVTVPIR 60

Query: 61  LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRG 120
           LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRG
Sbjct: 61  LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRG 120

Query: 121 LHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE 180
           LHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE
Sbjct: 121 LHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE 180

Query: 181 DWETEY 186
           DWETEY
Sbjct: 181 DWETEY 186


>gi|113428768 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 186

 Score =  401 bits (1030), Expect = e-112
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLSSTDPTHLGLPESVASVTVPIR 60
           MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLSSTDPTHLGLPESVASVTVPIR
Sbjct: 1   MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLSSTDPTHLGLPESVASVTVPIR 60

Query: 61  LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRG 120
           LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRG
Sbjct: 61  LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRG 120

Query: 121 LHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE 180
           LHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE
Sbjct: 121 LHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE 180

Query: 181 DWETEY 186
           DWETEY
Sbjct: 181 DWETEY 186


>gi|113428351 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 186

 Score =  400 bits (1027), Expect = e-112
 Identities = 185/186 (99%), Positives = 186/186 (100%)

Query: 1   MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLSSTDPTHLGLPESVASVTVPIR 60
           MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLL+STDPTHLGLPESVASVTVPIR
Sbjct: 1   MEQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLNSTDPTHLGLPESVASVTVPIR 60

Query: 61  LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRG 120
           LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRG
Sbjct: 61  LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRG 120

Query: 121 LHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE 180
           LHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE
Sbjct: 121 LHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETPLAAE 180

Query: 181 DWETEY 186
           DWETEY
Sbjct: 181 DWETEY 186


>gi|239755187 PREDICTED: similar to hemicentin 2 [Homo sapiens]
          Length = 1215

 Score = 47.4 bits (111), Expect = 7e-06
 Identities = 58/186 (31%), Positives = 71/186 (38%), Gaps = 28/186 (15%)

Query: 8    AGPEGNNLSLPSSGTEPWPPAPLPAP--PPLLLSSTDPTHLGLPESVASVTVPIR----- 60
            AG   +   L   G   W P  LP P  P  L   + P     P SV    + +R     
Sbjct: 1033 AGSASHRYVLGVQGRTSWQPQSLPVPHHPACLSGLSVPLLQPTPRSVRLCHLSLRAPLPP 1092

Query: 61   -LDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPG-AVRRPP--RGRGGWEVRHRPG 116
               T +  L  A L + T    L   P         PG AV+RPP  +GR  W     PG
Sbjct: 1093 PFATPTSCLSQACLSSSTLSLHLSPYPL------RGPGDAVQRPPTTQGRAQW----GPG 1142

Query: 117  WGR-GLH----RRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEP 171
            +GR G+     + GL  +    RG AG PG G    P+     P  PA       RGP  
Sbjct: 1143 FGRTGVRGEPMKVGLRGSLPGTRGPAGSPGCGDGKRPVRCHRAP--PAGSILMPPRGPSE 1200

Query: 172  PLETPL 177
            PL  PL
Sbjct: 1201 PLLPPL 1206


>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
          Length = 1499

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 58/197 (29%), Positives = 75/197 (38%), Gaps = 20/197 (10%)

Query: 2   EQPKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLSSTDPT--HLGLPESVASVTVPI 59
           + PK    PE   LS PS+GT    P PLP PPP    S  P     G PE  +    P 
Sbjct: 278 QAPKVPPTPEPLPLSTPSAGTPQSQPPPLPPPPPPAPGSAPPALPPEGPPEDSSQDLAPN 337

Query: 60  RLDTLSC-----LLHSALLGAYTFQQALP------SCPCCSQAGH-SQPGAVRRPPRGRG 107
            +   S        H     A T    LP      S P  +  G  + PG  +R   G  
Sbjct: 338 SVGAASTGGGTGGTHPNTPTATTANNPLPPGGDPSSAPGPALLGEAAAPGNGQRSLVGSE 397

Query: 108 GW---EVRHRPGWGRGLH--RRGLGRAEQPERGRAGGP-GAGPRTPPMTLPSPPTLPAQD 161
           G    ++ HR    + L    R L R+ + E    G P GAG   PP   P PP  P   
Sbjct: 398 GLSKEQLEHRERSLQTLRDIERLLLRSGETEPFLKGPPGGAGEGGPPAQAPPPPQQPPTA 457

Query: 162 GKKEARGPEPPLETPLA 178
                +  E PL++ ++
Sbjct: 458 PPSGLKKYEEPLQSMIS 474



 Score = 32.0 bits (71), Expect = 0.32
 Identities = 42/169 (24%), Positives = 61/169 (36%), Gaps = 13/169 (7%)

Query: 16   SLPSSGTEPWPPAPLPAPPPLL------LSSTDPTHLGLPESVASVTVPIRLDTLSCLLH 69
            ++ +S  E  P  PL  PPP        +S++ P+ + L  + A   + + L     L H
Sbjct: 1109 TIATSDDELLPDRPLLPPPPPPQGSGPGISNSQPSQMHLNSAAAQSPMGMNLPGQQPLSH 1168

Query: 70   S---ALLGAYT-FQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGRGLHRRG 125
                A+L + T     +P  P     G     ++   P G         P          
Sbjct: 1169 EPPPAMLPSPTPLGSNIPLHPNAQGTGGPPQNSMMMAPGGPDSLNAPCGPVPSSSQMMPF 1228

Query: 126  LGRAEQPERGRA--GGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPP 172
              R +QP    A  GG G GP       PS   LP +D   +  GP PP
Sbjct: 1229 PPRLQQPHGAMAPTGGGGGGPGLQ-QHYPSGMALPPEDLPNQPPGPMPP 1276


>gi|122056628 prion protein preproprotein [Homo sapiens]
          Length = 253

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 92  GHSQPGAVRRPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAG 143
           G   PG  R PP+G GGW   H  GWG+  H  G G   QP  G  G P  G
Sbjct: 40  GQGSPGGNRYPPQGGGGWGQPHGGGWGQP-HGGGWG---QPHGGGWGQPHGG 87


>gi|122056625 prion protein preproprotein [Homo sapiens]
          Length = 253

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 92  GHSQPGAVRRPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAG 143
           G   PG  R PP+G GGW   H  GWG+  H  G G   QP  G  G P  G
Sbjct: 40  GQGSPGGNRYPPQGGGGWGQPHGGGWGQP-HGGGWG---QPHGGGWGQPHGG 87


>gi|122056623 prion protein preproprotein [Homo sapiens]
          Length = 253

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 92  GHSQPGAVRRPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAG 143
           G   PG  R PP+G GGW   H  GWG+  H  G G   QP  G  G P  G
Sbjct: 40  GQGSPGGNRYPPQGGGGWGQPHGGGWGQP-HGGGWG---QPHGGGWGQPHGG 87


>gi|34335270 prion protein preproprotein [Homo sapiens]
          Length = 253

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 92  GHSQPGAVRRPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAG 143
           G   PG  R PP+G GGW   H  GWG+  H  G G   QP  G  G P  G
Sbjct: 40  GQGSPGGNRYPPQGGGGWGQPHGGGWGQP-HGGGWG---QPHGGGWGQPHGG 87


>gi|4506113 prion protein preproprotein [Homo sapiens]
          Length = 253

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 92  GHSQPGAVRRPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAG 143
           G   PG  R PP+G GGW   H  GWG+  H  G G   QP  G  G P  G
Sbjct: 40  GQGSPGGNRYPPQGGGGWGQPHGGGWGQP-HGGGWG---QPHGGGWGQPHGG 87


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 55/188 (29%), Positives = 64/188 (34%), Gaps = 21/188 (11%)

Query: 4    PKDG-AGPEGNNLSLPSSGTEPWPPAPLPAPP----PLLLSSTDPTHLG---LPESVASV 55
            PK G A P      +P + T P P   L  PP    P   ++T P+  G    P    + 
Sbjct: 1090 PKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAP 1149

Query: 56   TVPIRL--DTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGA----VRRPPRGRGGW 109
            T P          L      GA T   A P  P    A  S  GA       PP  +GG 
Sbjct: 1150 TTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGL 1209

Query: 110  EVRHRPGWGRGLHRRGLGRAEQPERGRAG-GPGAGPRTPPMTLPSPPTLPAQDGKKEARG 168
                     +G           P+ G A   P   P TP  T PSP   PA    K A  
Sbjct: 1210 ATPSP----KGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGA-- 1263

Query: 169  PEPPLETP 176
            P PP  TP
Sbjct: 1264 PTPPAATP 1271



 Score = 37.4 bits (85), Expect = 0.008
 Identities = 50/190 (26%), Positives = 68/190 (35%), Gaps = 27/190 (14%)

Query: 4    PKDGAGPEGNNLSLPSSGTEPWPPAPLPAPPPLLLSSTDP---------------THLGL 48
            P++    +G+  S P++   P PP+P  AP P  ++   P                +L  
Sbjct: 837  PENSLSFQGSKDS-PATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPF 895

Query: 49   PESVASVTVPIRLDTLSCLLHSALLGAYT-FQQALPSCPCCSQAGHSQPGAVRRPPRGRG 107
            P+   +   P +   LS    S      T   + +P+ P  S  G   P A   PP  +G
Sbjct: 896  PKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASP--SPKGAPTPPAA-TPPSPKG 952

Query: 108  GWEVRHRPGWGRGLHRRGLGRAEQPERGRA-GGPGAGPRTPPMTLPSPPTLPAQDGKKEA 166
            G      P W              P+ G A   P   P  P  T PSP   PA    K A
Sbjct: 953  G-PATPSPKWA---PTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGA 1008

Query: 167  RGPEPPLETP 176
              P PP  TP
Sbjct: 1009 --PTPPAVTP 1016



 Score = 34.3 bits (77), Expect = 0.064
 Identities = 50/181 (27%), Positives = 60/181 (33%), Gaps = 37/181 (20%)

Query: 8    AGPEGNNLSLPSSGTEPWP------PAPLPAPPPLLLSSTDPTHLGLPESVASVTVPIRL 61
            A P       P + T P P      P+P  AP P   ++T P+  G P + +        
Sbjct: 932  ASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPP--AATPPSPKGGPATPSPK------ 983

Query: 62   DTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQPGAVR----RPPRGRGGWEVRHRPGW 117
                        GA T   A P  P    A  S  GA       PP  +G       P  
Sbjct: 984  ------------GAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFP-- 1029

Query: 118  GRGLHRRGLGRAEQPERGRAGGP--GAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLET 175
             +G           P+   A  P     P TP  TLPSP   PA    K A  P PP  T
Sbjct: 1030 -KGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGA--PTPPAAT 1086

Query: 176  P 176
            P
Sbjct: 1087 P 1087



 Score = 31.6 bits (70), Expect = 0.41
 Identities = 58/203 (28%), Positives = 71/203 (34%), Gaps = 44/203 (21%)

Query: 10   PEGNNLSLPSSGTEPWPPAPLPAPPPLLLSSTDPTHLGLPESVASVTVPIRLDTLSCLLH 69
            P+G  L+ PS    P  PA  P  P   L++  P   G P + A+ T P     L+    
Sbjct: 1182 PKGG-LATPSPKGAPTTPAATPPSPKGGLATPSPK--GAPTTPAA-TPPSPKGGLAT--- 1234

Query: 70   SALLGAYTFQQALPSCPCCSQAGHSQPGA----VRRPPRGRGGWEVRHRPGWGRGL---- 121
             +  GA T   A P  P    A     GA       PP  +GG       G         
Sbjct: 1235 PSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTP 1294

Query: 122  -HRRGLGRAEQPERGRAGGPGA-------GPRTPP---------MTLPSP---PTLPAQD 161
               +G G A  P +G    P A        P TPP         +T PSP   PTLPA  
Sbjct: 1295 PSPKG-GPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATT 1353

Query: 162  GKKEA--------RGPEPPLETP 176
               +          GP PP  TP
Sbjct: 1354 PSSKGGPTTPSSKEGPTPPAATP 1376


>gi|239757686 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 140

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 43/137 (31%), Positives = 52/137 (37%), Gaps = 36/137 (26%)

Query: 38  LSSTDPTHLGLPESVASVTVPI--RLDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQ 95
           LSS+ P +L         TVP+   LD     LH AL G       L   P C +     
Sbjct: 19  LSSSWPRYLQHHPGAGQATVPVVELLDDGHRQLHKALTG-------LERRPRCLRLRPHD 71

Query: 96  PGAVRRP-PRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSP 154
           PG   RP PR R G+  R   GWG                GRA G           +PSP
Sbjct: 72  PGGAGRPWPRPRAGYSFRF--GWG----------------GRAVGA--------CRVPSP 105

Query: 155 PTLPAQDGKKEARGPEP 171
           P  P + G++EA    P
Sbjct: 106 PPPPLRRGEREAAAGPP 122


>gi|239752176 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 140

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 43/137 (31%), Positives = 52/137 (37%), Gaps = 36/137 (26%)

Query: 38  LSSTDPTHLGLPESVASVTVPI--RLDTLSCLLHSALLGAYTFQQALPSCPCCSQAGHSQ 95
           LSS+ P +L         TVP+   LD     LH AL G       L   P C +     
Sbjct: 19  LSSSWPRYLQHHPGAGQATVPVVELLDDGHRQLHKALTG-------LERRPRCLRLRPHD 71

Query: 96  PGAVRRP-PRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSP 154
           PG   RP PR R G+  R   GWG                GRA G           +PSP
Sbjct: 72  PGGAGRPWPRPRAGYSFRF--GWG----------------GRAVGA--------CRVPSP 105

Query: 155 PTLPAQDGKKEARGPEP 171
           P  P + G++EA    P
Sbjct: 106 PPPPLRRGEREAAAGPP 122


>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
          Length = 701

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 46/173 (26%), Positives = 65/173 (37%), Gaps = 22/173 (12%)

Query: 8   AGPEGNNLSLPSSGTEPWP-PAPLPAPPPLLLSST--DPTHLGLPESVASVTVPIRLDTL 64
           A  E  + ++P+  T P P PAP PAP P L S+   + T   +P   AS  V       
Sbjct: 495 ASEELPSTAVPTPATTPAPAPAPAPAPAPALASAATKERTESEVPPRPASPKVTRSPPET 554

Query: 65  SCLLHSALLGAYTFQQALPSCPCCSQAG-HSQPGAVRRPPRGRGGWEVRHRPGWGRGLHR 123
           +  +            A P+ P    +G  S P A   PP G G       PG  + L R
Sbjct: 555 AAPVEDMARRTKRPAPARPTMPPPQVSGSRSSPPAPPLPP-GSGS------PGTPQALPR 607

Query: 124 RGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLETP 176
           R +G + +            P  PP   P+PP    +  ++    P P    P
Sbjct: 608 RLVGSSLR-----------APTVPPPLPPTPPQPARRQSRRSPASPSPASPGP 649


>gi|239756943 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 783

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 103 PRGRGGW-EVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQD 161
           P  R  W +++ + G GRG   RG GR  +P  G  GG  AG  T  + LP     P   
Sbjct: 500 PLQRSVWGQLQPQAGGGRGWEGRGAGRWARPGPGWDGGARAG--TQGLPLPGTEAEPGAL 557

Query: 162 GKKEARGPEPPLETPLAA 179
           G   +RGP P   + L+A
Sbjct: 558 GCSLSRGPVPRQGSLLSA 575


>gi|239751443 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 783

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 103 PRGRGGW-EVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQD 161
           P  R  W +++ + G GRG   RG GR  +P  G  GG  AG  T  + LP     P   
Sbjct: 500 PLQRSVWGQLQPQAGGGRGWEGRGAGRWARPGPGWDGGARAG--TQGLPLPGTEAEPGAL 557

Query: 162 GKKEARGPEPPLETPLAA 179
           G   +RGP P   + L+A
Sbjct: 558 GCSLSRGPVPRQGSLLSA 575


>gi|239745948 PREDICTED: hypothetical protein XP_002343622 [Homo
           sapiens]
          Length = 791

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 103 PRGRGGW-EVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQD 161
           P  R  W +++ + G GRG   RG GR  +P  G  GG  AG  T  + LP     P   
Sbjct: 508 PLQRSVWGQLQPQAGGGRGWEGRGAGRWARPGPGWDGGARAG--TQGLPLPGTEAEPGAL 565

Query: 162 GKKEARGPEPPLETPLAA 179
           G   +RGP P   + L+A
Sbjct: 566 GCSLSRGPVPRQGSLLSA 583


>gi|7706469 Kruppel-like factor [Homo sapiens]
          Length = 355

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 44/163 (26%), Positives = 53/163 (32%), Gaps = 21/163 (12%)

Query: 14  NLSLPSSGTEPWPPAPLPAPPPLLLSSTDPTHLGLPESVASVTVPIRLDTLSCLLHSALL 73
           ++ L   G E  P  P P PPP                   +   +    L   L  AL 
Sbjct: 50  SMGLDGLGAEAAPEPPPPPPPPAFYYPEPGAPPPYSAPAGGLVSELLRPELDAPLGPALH 109

Query: 74  GAYTFQQALPSCPCCSQAGHSQPGAVRR--PPRGRGGWEVRHRPGWGRGLHRRGLGR--A 129
           G +                 + PG + +  PP   GG      PG  RG   RGL R  A
Sbjct: 110 GRFLL---------------APPGRLVKAEPPEADGGGGYGCAPGLTRG--PRGLKREGA 152

Query: 130 EQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPP 172
             P      GPG  P  PP T P  P  PA+      R   PP
Sbjct: 153 PGPAASCMRGPGGRPPPPPDTPPLSPDGPARLPAPGPRASFPP 195


>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
          Length = 890

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 12/77 (15%)

Query: 91  AGHSQPGAVRRPPRGRGGWEVRHRPGWGRG--LHRRGLGRAEQPERG-------RAGGPG 141
           A H  P   R  PRG G     HR G G G   HR   GR+     G        +G PG
Sbjct: 45  AKHPVPARARDKPRGSGSGGGGHRDGRGTGDANHRASSGRSSGSGAGGGGRGGKASGDPG 104

Query: 142 A---GPRTPPMTLPSPP 155
           A    PR  P+  P PP
Sbjct: 105 ASGMSPRASPLPPPPPP 121


>gi|38194229 kelch-like 17 [Homo sapiens]
          Length = 642

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 124 RGLGRAEQPERGRAGGPGAGPRTPPMTLPSPPTLPAQDGKKEARGPEPPLE 174
           R  GR + PE G    PG GP  PP   P PP   A+  +     P  P+E
Sbjct: 7   RPAGRTQSPEHG---SPGPGPEAPPPPPPQPPAPEAERTRPRQARPAAPME 54


>gi|146134388 YLP motif containing 1 [Homo sapiens]
          Length = 2146

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 41/168 (24%), Positives = 59/168 (35%), Gaps = 22/168 (13%)

Query: 21  GTEPWPPAPLPAPPPLLLSSTDPTHLGLPESVASVTVPIRLDTLSCL----LHSALLGAY 76
           G+  +PP P+P PPP+ L    P         +S T P    +   +     H A L   
Sbjct: 10  GSSHYPPPPVPPPPPVALPEASP-----GPGYSSSTTPAAPSSSGFMSFREQHLAQLQQL 64

Query: 77  TFQQALPSCPCCSQAGHSQPGAVRRPP----RGRGGWE-----VRHRPGWGRGLHRRGLG 127
             Q       C  Q  H  P  +  PP     G G W+     +   PG      ++   
Sbjct: 65  Q-QMHQKQMQCVLQPHHLPPPPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQKQQQY 123

Query: 128 RAEQPERGRAGGPGAGP---RTPPMTLPSPPTLPAQDGKKEARGPEPP 172
           + +     R G PG  P    +PP + P PP       +     P+PP
Sbjct: 124 KHQMLHHQRDGPPGLVPMELESPPESPPVPPGSYMPPSQSYMPPPQPP 171



 Score = 27.3 bits (59), Expect = 7.8
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 4   PKDGAGPEGNNLSLPSSGTEPWPPAPLPA--PPPLL----LSSTDPTHLGLPESVASVTV 57
           P  G  P     SLP+S   P  P  L +  PPP+L    LSS  P  +  P S++S   
Sbjct: 556 PPPGMPPPVMPPSLPTSVPPPGMPPSLSSAGPPPVLPPPSLSSAGPPPVLPPPSLSSTAP 615

Query: 58  P 58
           P
Sbjct: 616 P 616



 Score = 27.3 bits (59), Expect = 7.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 24   PWPPAPLPAPPPLLLSST 41
            P PP PLP PPP++   T
Sbjct: 1549 PPPPPPLPPPPPVIKPQT 1566


>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 6 [Homo sapiens]
          Length = 562

 Score = 37.7 bits (86), Expect = 0.006
 Identities = 19/43 (44%), Positives = 23/43 (53%)

Query: 102 PPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGP 144
           PPRGR G+  R  PG  RG+     G  +Q  RG+  G  AGP
Sbjct: 516 PPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGP 558


>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 3 [Homo sapiens]
          Length = 527

 Score = 37.7 bits (86), Expect = 0.006
 Identities = 19/43 (44%), Positives = 23/43 (53%)

Query: 102 PPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGP 144
           PPRGR G+  R  PG  RG+     G  +Q  RG+  G  AGP
Sbjct: 481 PPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGP 523


>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 2 [Homo sapiens]
          Length = 464

 Score = 37.7 bits (86), Expect = 0.006
 Identities = 19/43 (44%), Positives = 23/43 (53%)

Query: 102 PPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGP 144
           PPRGR G+  R  PG  RG+     G  +Q  RG+  G  AGP
Sbjct: 418 PPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGP 460


>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 5 [Homo sapiens]
          Length = 561

 Score = 37.7 bits (86), Expect = 0.006
 Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 102 PPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAG-GPGAGP 144
           PPRGR G+  R  PG  RG+  RG     Q +RGR G G  AGP
Sbjct: 516 PPRGRAGYSQRGGPGSARGV--RGARGGAQQQRGRGGKGVEAGP 557


>gi|115430223 galectin 3 [Homo sapiens]
          Length = 250

 Score = 37.7 bits (86), Expect = 0.006
 Identities = 27/80 (33%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 96  PGAVRRPPRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTP-PMTLPSP 154
           PGA    P G GG+     PG   G    G    + P     G PGA P  P P   P P
Sbjct: 23  PGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAYPGAPGAYPGAPAPGVYPGP 82

Query: 155 PTLPA---QDGKKEARGPEP 171
           P+ P      G+  A G  P
Sbjct: 83  PSGPGAYPSSGQPSATGAYP 102


>gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 208

 Score = 37.4 bits (85), Expect = 0.008
 Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 1/89 (1%)

Query: 92  GHSQPGAVRRP-PRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTPPMT 150
           G   P A  RP PR R     R  P    G        A  P      G    P  PPM+
Sbjct: 71  GERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMS 130

Query: 151 LPSPPTLPAQDGKKEARGPEPPLETPLAA 179
            P+PP   ++ G+ E  GP   L  P A+
Sbjct: 131 APTPPLGKSEPGEPETSGPRAYLRDPGAS 159



 Score = 28.9 bits (63), Expect = 2.7
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 13/103 (12%)

Query: 17  LPSSGTEPWPPAPLPAPPPLLLSSTDPTHLGLPESVASVTVPIRLDTLSCLLHSALLGAY 76
           LP++G  P PP P  + P   L  ++P   G PE+ +     +R    S  L   L    
Sbjct: 115 LPTNGRRPSPPRPPMSAPTPPLGKSEP---GEPET-SGPRAYLRDPGASAALRKVLATG- 169

Query: 77  TFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGR 119
                 P+ P   +   +     RR    RGG  +  RP WG+
Sbjct: 170 ------PAQPTSPRLVFAWSRGARRERSSRGG--IFARPRWGK 204


>gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo
           sapiens]
          Length = 208

 Score = 37.4 bits (85), Expect = 0.008
 Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 1/89 (1%)

Query: 92  GHSQPGAVRRP-PRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTPPMT 150
           G   P A  RP PR R     R  P    G        A  P      G    P  PPM+
Sbjct: 71  GERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMS 130

Query: 151 LPSPPTLPAQDGKKEARGPEPPLETPLAA 179
            P+PP   ++ G+ E  GP   L  P A+
Sbjct: 131 APTPPLGKSEPGEPETSGPRAYLRDPGAS 159



 Score = 28.9 bits (63), Expect = 2.7
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 13/103 (12%)

Query: 17  LPSSGTEPWPPAPLPAPPPLLLSSTDPTHLGLPESVASVTVPIRLDTLSCLLHSALLGAY 76
           LP++G  P PP P  + P   L  ++P   G PE+ +     +R    S  L   L    
Sbjct: 115 LPTNGRRPSPPRPPMSAPTPPLGKSEP---GEPET-SGPRAYLRDPGASAALRQVLATG- 169

Query: 77  TFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGR 119
                 P+ P   +   +     RR    RGG  +  RP WG+
Sbjct: 170 ------PAQPTSPRLVSAWSRGARRERSSRGG--IFARPRWGK 204


>gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo
           sapiens]
          Length = 208

 Score = 37.4 bits (85), Expect = 0.008
 Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 1/89 (1%)

Query: 92  GHSQPGAVRRP-PRGRGGWEVRHRPGWGRGLHRRGLGRAEQPERGRAGGPGAGPRTPPMT 150
           G   P A  RP PR R     R  P    G        A  P      G    P  PPM+
Sbjct: 71  GERGPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPTNGRRPSPPRPPMS 130

Query: 151 LPSPPTLPAQDGKKEARGPEPPLETPLAA 179
            P+PP   ++ G+ E  GP   L  P A+
Sbjct: 131 APTPPLGKSEPGEPETSGPRAYLRDPGAS 159



 Score = 28.9 bits (63), Expect = 2.7
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 13/103 (12%)

Query: 17  LPSSGTEPWPPAPLPAPPPLLLSSTDPTHLGLPESVASVTVPIRLDTLSCLLHSALLGAY 76
           LP++G  P PP P  + P   L  ++P   G PE+ +     +R    S  L   L    
Sbjct: 115 LPTNGRRPSPPRPPMSAPTPPLGKSEP---GEPET-SGPRAYLRDPGASAALRQVLATG- 169

Query: 77  TFQQALPSCPCCSQAGHSQPGAVRRPPRGRGGWEVRHRPGWGR 119
                 P+ P   +   +     RR    RGG  +  RP WG+
Sbjct: 170 ------PAQPTSPRLVSAWSRGARRERSSRGG--IFARPRWGK 204


>gi|38788219 zinc finger protein 428 [Homo sapiens]
          Length = 188

 Score = 37.0 bits (84), Expect = 0.010
 Identities = 30/80 (37%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 108 GWEVRHRPGWGRGLHRRGLGRAEQPER------GRAGGPGAGPRTPPMTLPSPPTLPAQD 161
           G++V+ R G GRG   R   RA QP        GR+    A P TPP  L  P T P + 
Sbjct: 64  GYKVKQRLGGGRGGPSRRAPRAAQPPAQPCQLCGRSPLGEAPPGTPPCRLCCPATAPQEA 123

Query: 162 GKKEARG-PEPPLETPLAAE 180
              E R   E   E P A E
Sbjct: 124 PAPEGRALGEEEEEPPRAGE 143


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.136    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,857,978
Number of Sequences: 37866
Number of extensions: 823063
Number of successful extensions: 10204
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 679
Number of HSP's that attempted gapping in prelim test: 7205
Number of HSP's gapped (non-prelim): 3260
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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