Guide to the Human Genome
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Name: LOC100288305 Sequence: fasta or formatted (140aa) NCBI GI: 239752176
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {140aa} PREDICTED: hypothetical protein XP_002343813
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         13           3
 C cysteine            2.9          4           1
 D aspartate           2.1          3           2
 E glutamate           3.6          5           1
 F phenylalanine       2.9          4           1
 G glycine            10.0         14           2
 H histidine           3.6          5           2
 I isoleucine          0.0          0           0
 K lysine              0.7          1           1
 L leucine            10.0         14           2
 M methionine          1.4          2           1
 N asparagine          1.4          2           1
 P proline            17.1         24           5
 Q glutamine           5.0          7           1
 R arginine           12.1         17           2
 S serine              7.1         10           3
 T threonine           1.4          2           1
 V valine              5.7          8           2
 W tryptophan          2.1          3           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293994          1.000   PREDICTED: hypothetical protein 
LOC100288305          0.989   PREDICTED: hypothetical protein XP_002343813 
HOXB4                 0.057   homeobox B4 
LOC147646             0.054   PREDICTED: hypothetical protein 
LOC147646             0.054   PREDICTED: hypothetical protein 
LOC147646             0.050   PREDICTED: hypothetical protein 
INF2                  0.050   inverted formin 2 isoform 2 
INF2                  0.050   inverted formin 2 isoform 1 
SF3B4                 0.050   splicing factor 3b, subunit 4 
ENAH                  0.047   enabled homolog isoform a 
ENAH                  0.047   enabled homolog isoform b 
PAPPA                 0.043   pregnancy-associated plasma protein A preproprotein ...
LOC100292124          0.043   PREDICTED: hypothetical protein XP_002346387 
WASF1                 0.043   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.043   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.043   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.043   Wiskott-Aldrich syndrome protein family member 1 [Hom...
LOC100293254          0.043   PREDICTED: hypothetical protein 
LOC100289377          0.043   PREDICTED: hypothetical protein 
LOC100289377          0.043   PREDICTED: hypothetical protein XP_002343119 
WAS                   0.039   Wiskott-Aldrich syndrome protein 
BAT2                  0.039   HLA-B associated transcript-2 
FMNL1                 0.039   formin-like 1 
FMNL2                 0.039   formin-like 2 
PCNXL3                0.039   pecanex-like 3 
IQSEC2                0.039   IQ motif and Sec7 domain 2 isoform1 
ZNF318                0.039   zinc finger protein 318 
PDCD7                 0.039   programmed cell death 7 
DAZAP1                0.036   DAZ associated protein 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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