Search of human proteins with 169213749

Search of human proteins with 169213749

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169213749 PREDICTED: similar to elongin C [Homo sapiens]
         (115 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169213749 PREDICTED: similar to elongin C [Homo sapiens]           235   5e-63
gi|169214183 PREDICTED: similar to elongin C [Homo sapiens]           235   5e-63
gi|169213526 PREDICTED: similar to elongin C [Homo sapiens]           235   5e-63
gi|5032161 elongin C [Homo sapiens]                                   206   4e-54
gi|239747430 PREDICTED: similar to elongin C [Homo sapiens]           160   2e-40
gi|239752879 PREDICTED: similar to elongin C [Homo sapiens]           160   3e-40
gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo ...   159   6e-40
gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo ...   122   8e-29
gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo ...   122   8e-29
gi|239757103 PREDICTED: similar to fos39347_1 [Homo sapiens]          113   3e-26
gi|113430993 PREDICTED: similar to elongin C [Homo sapiens]            78   2e-15
gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo ...    37   0.003
gi|25777711 S-phase kinase-associated protein 1 isoform a [Homo ...    37   0.003
gi|239755758 PREDICTED: similar to S-phase kinase-associated pro...    37   0.003
gi|239750260 PREDICTED: similar to S-phase kinase-associated pro...    37   0.003
gi|239744568 PREDICTED: similar to S-phase kinase-associated pro...    37   0.003
gi|239753827 PREDICTED: similar to S-phase kinase-associated pro...    32   0.083
gi|239748390 PREDICTED: hypothetical protein XP_002346652 [Homo ...    32   0.083
gi|239742318 PREDICTED: hypothetical protein XP_002342489 [Homo ...    32   0.083
gi|148839316 NIMA-related kinase 4 [Homo sapiens]                      27   2.7  
gi|31442761 amiloride-sensitive cation channel 5, intestinal [Ho...    27   4.5  
gi|163914394 DEAQ box polypeptide 1 (RNA-dependent ATPase) [Homo...    26   5.9  
gi|239747654 PREDICTED: hypothetical protein XP_002348126 [Homo ...    26   7.7  

>gi|169213749 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 115

 Score =  235 bits (600), Expect = 5e-63
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60
           MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV
Sbjct: 1   MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60

Query: 61  HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115
           HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC
Sbjct: 61  HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115


>gi|169214183 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 115

 Score =  235 bits (600), Expect = 5e-63
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60
           MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV
Sbjct: 1   MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60

Query: 61  HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115
           HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC
Sbjct: 61  HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115


>gi|169213526 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 115

 Score =  235 bits (600), Expect = 5e-63
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60
           MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV
Sbjct: 1   MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60

Query: 61  HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115
           HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC
Sbjct: 61  HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115


>gi|5032161 elongin C [Homo sapiens]
          Length = 112

 Score =  206 bits (523), Expect = 4e-54
 Identities = 101/115 (87%), Positives = 107/115 (93%), Gaps = 3/115 (2%)

Query: 1   MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60
           MDGE+KTYGGCEGPDA+YVKLI SDGHEFIVK+E ALTSGTIKAMLSGPGQFAENE +EV
Sbjct: 1   MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV 60

Query: 61  HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115
           +FREIPSHVLSKV   CMYF YKVRY NSSTEIPEFP+APEIALELLMAANFLDC
Sbjct: 61  NFREIPSHVLSKV---CMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112


>gi|239747430 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 269

 Score =  160 bits (406), Expect = 2e-40
 Identities = 83/114 (72%), Positives = 89/114 (78%), Gaps = 3/114 (2%)

Query: 2   DGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVH 61
           DG KKTYG CEGPDA+YVKLI S GH+ IVK+E A+TS TIKAMLSGPGQ AENE  EV 
Sbjct: 159 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 218

Query: 62  FREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115
           FREI SHVLSKV   CMY  YK  Y NSSTEI +FP AP+IA ELLM  NFLDC
Sbjct: 219 FREISSHVLSKV---CMYVTYKGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 269


>gi|239752879 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 269

 Score =  160 bits (404), Expect = 3e-40
 Identities = 82/114 (71%), Positives = 89/114 (78%), Gaps = 3/114 (2%)

Query: 2   DGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVH 61
           DG KKTYG CEGPDA+YVKLI S GH+ IVK+E A+TS TIKAMLSGPGQ AENE  EV 
Sbjct: 159 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 218

Query: 62  FREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115
           FREI SHVLSKV   CMY  YK  Y NSSTEI +FP AP++A ELLM  NFLDC
Sbjct: 219 FREISSHVLSKV---CMYVTYKGHYTNSSTEILKFPAAPQLAPELLMTVNFLDC 269


>gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo
           sapiens]
          Length = 287

 Score =  159 bits (401), Expect = 6e-40
 Identities = 82/114 (71%), Positives = 88/114 (77%), Gaps = 3/114 (2%)

Query: 2   DGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVH 61
           DG KKTYG CEGPDA+YVKLI S GH+ IVK+E A+TS TIKAMLSGPGQ AENE  EV 
Sbjct: 177 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 236

Query: 62  FREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLDC 115
           FREI SHVLSKV   CMY  Y   Y NSSTEI +FP AP+IA ELLM  NFLDC
Sbjct: 237 FREISSHVLSKV---CMYVTYNGHYTNSSTEILKFPAAPQIAPELLMTVNFLDC 287


>gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo
           sapiens]
          Length = 120

 Score =  122 bits (305), Expect = 8e-29
 Identities = 65/114 (57%), Positives = 80/114 (70%), Gaps = 4/114 (3%)

Query: 1   MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60
           M+GE+K+  G  GPDA+  KL+ SD  +FIVK+E    SG  KA+LSGPGQ AENE D+V
Sbjct: 1   MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60

Query: 61  HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLD 114
           +FREIP     K    C+YF YKV Y+NSSTEIPEF      ALE+LMA++FLD
Sbjct: 61  NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLT----ALEVLMASDFLD 110


>gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo
           sapiens]
          Length = 120

 Score =  122 bits (305), Expect = 8e-29
 Identities = 65/114 (57%), Positives = 80/114 (70%), Gaps = 4/114 (3%)

Query: 1   MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60
           M+GE+K+  G  GPDA+  KL+ SD  +FIVK+E    SG  KA+LSGPGQ AENE D+V
Sbjct: 1   MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60

Query: 61  HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLD 114
           +FREIP     K    C+YF YKV Y+NSSTEIPEF      ALE+LMA++FLD
Sbjct: 61  NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLT----ALEVLMASDFLD 110


>gi|239757103 PREDICTED: similar to fos39347_1 [Homo sapiens]
          Length = 181

 Score =  113 bits (283), Expect = 3e-26
 Identities = 62/113 (54%), Positives = 76/113 (67%), Gaps = 4/113 (3%)

Query: 1   MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60
           M+GE+K+  G  GPDA+  KL+ SD  +FIVK+E    SG  KA+LSGPGQ AENE D+V
Sbjct: 1   MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60

Query: 61  HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFL 113
           +FREIP     K    C+YF  KV Y+NSSTEIPEF      ALE+LM  +FL
Sbjct: 61  NFREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEFLT----ALEVLMIQHFL 109


>gi|113430993 PREDICTED: similar to elongin C [Homo sapiens]
          Length = 101

 Score = 77.8 bits (190), Expect = 2e-15
 Identities = 46/101 (45%), Positives = 59/101 (58%), Gaps = 12/101 (11%)

Query: 1  MDGEKKTYGGCEGPDAVYVKLILSDGH----EFIVKKERALTSGTIKAMLSGPGQFAENE 56
          MD E+KTY  CE  + +     +S+G+    EF+VK   A TS T+K +L+GP  FAE  
Sbjct: 1  MDEEEKTYSVCESSNTM-----MSNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKG 55

Query: 57 ADEVHFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFP 97
            EV+ R+ PS VL K    C YF Y   Y  SSTEIP+FP
Sbjct: 56 TIEVNLRDNPSQVLPKA---CKYFTYIFHYTYSSTEIPKFP 93


>gi|25777713 S-phase kinase-associated protein 1 isoform b [Homo
           sapiens]
          Length = 163

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 12/108 (11%)

Query: 19  VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78
           +KL  SDG  F V  E A  S TIK ML   G   E + D V    + + +L KV   C 
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63

Query: 79  YFM----YKVRYANSSTEIPEFPVAPEIAL--------ELLMAANFLD 114
           +            N      + PV  +  L        EL++AAN+LD
Sbjct: 64  HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111


>gi|25777711 S-phase kinase-associated protein 1 isoform a [Homo
           sapiens]
          Length = 160

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 12/108 (11%)

Query: 19  VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78
           +KL  SDG  F V  E A  S TIK ML   G   E + D V    + + +L KV   C 
Sbjct: 4   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT 63

Query: 79  YFM----YKVRYANSSTEIPEFPVAPEIAL--------ELLMAANFLD 114
           +            N      + PV  +  L        EL++AAN+LD
Sbjct: 64  HHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111


>gi|239755758 PREDICTED: similar to S-phase kinase-associated
           protein 1A (p19A) [Homo sapiens]
          Length = 168

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 14/109 (12%)

Query: 19  VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78
           +KL  S G  F V  E    S TIK ML   G   E + D V    + + +L KV   C 
Sbjct: 4   IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63

Query: 79  YF-----MYKVRYANSSTEIPEFPVAPEIAL--------ELLMAANFLD 114
           +        KV Y N      + PV  +  L        EL++AAN+LD
Sbjct: 64  HHEDDSPPPKV-YENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111


>gi|239750260 PREDICTED: similar to S-phase kinase-associated
           protein 1A (p19A) [Homo sapiens]
          Length = 168

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 14/109 (12%)

Query: 19  VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78
           +KL  S G  F V  E    S TIK ML   G   E + D V    + + +L KV   C 
Sbjct: 4   IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63

Query: 79  YF-----MYKVRYANSSTEIPEFPVAPEIAL--------ELLMAANFLD 114
           +        KV Y N      + PV  +  L        EL++AAN+LD
Sbjct: 64  HHEDDSPPPKV-YENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111


>gi|239744568 PREDICTED: similar to S-phase kinase-associated
           protein 1A (p19A) [Homo sapiens]
          Length = 168

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 14/109 (12%)

Query: 19  VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78
           +KL  S G  F V  E    S TIK ML   G   E + D V    + + +L KV   C 
Sbjct: 4   IKLQSSGGEIFEVDVEIVKQSVTIKTMLEDLGMNDEGDHDPVPLPNVNAAILKKVIQWCT 63

Query: 79  YF-----MYKVRYANSSTEIPEFPVAPEIAL--------ELLMAANFLD 114
           +        KV Y N      + PV  +  L        EL++AAN+LD
Sbjct: 64  HHEDDSPPPKV-YENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLD 111


>gi|239753827 PREDICTED: similar to S-phase kinase-associated
           protein 1A (p19A) [Homo sapiens]
          Length = 202

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 20/115 (17%)

Query: 19  VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78
           +KL+ SDG  F V  E A  S T+K ML   G   + + D V    + + +L + + L  
Sbjct: 36  IKLLSSDGELFEVDVEIAKQSVTLKIMLENLG-MDDGDNDPVPLPNVNAAILKRSFRLGT 94

Query: 79  YFMYKVRYANSSTEIPE-------------------FPVAPEIALELLMAANFLD 114
              +     ++    PE                     + P    E+++AAN+LD
Sbjct: 95  IIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLD 149


>gi|239748390 PREDICTED: hypothetical protein XP_002346652 [Homo
           sapiens]
          Length = 202

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 20/115 (17%)

Query: 19  VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78
           +KL+ SDG  F V  E A  S T+K ML   G   + + D V    + + +L + + L  
Sbjct: 36  IKLLSSDGELFEVDVEIAKQSVTLKIMLENLG-MDDGDNDPVPLPNVNAAILKRSFRLGT 94

Query: 79  YFMYKVRYANSSTEIPE-------------------FPVAPEIALELLMAANFLD 114
              +     ++    PE                     + P    E+++AAN+LD
Sbjct: 95  IIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLD 149


>gi|239742318 PREDICTED: hypothetical protein XP_002342489 [Homo
           sapiens]
          Length = 202

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 20/115 (17%)

Query: 19  VKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEVHFREIPSHVLSKVYALCM 78
           +KL+ SDG  F V  E A  S T+K ML   G   + + D V    + + +L + + L  
Sbjct: 36  IKLLSSDGELFEVDVEIAKQSVTLKIMLENLG-MDDGDNDPVPLPNVNAAILKRSFRLGT 94

Query: 79  YFMYKVRYANSSTEIPE-------------------FPVAPEIALELLMAANFLD 114
              +     ++    PE                     + P    E+++AAN+LD
Sbjct: 95  IIQWCTNQKDNPPPPPEADENEEKRTDAIPAWDQKFLKIDPGTLFEVILAANYLD 149


>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
          Length = 841

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 11/21 (52%), Positives = 18/21 (85%), Gaps = 1/21 (4%)

Query: 50  GQFAENEADEVHFREIPSHVL 70
           G+ AE EA+E+HF+E+PS ++
Sbjct: 750 GKVAE-EAEEIHFKELPSAIM 769


>gi|31442761 amiloride-sensitive cation channel 5, intestinal [Homo
           sapiens]
          Length = 505

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 17  VYVKLILSDGHEFIVKKERALTSGTIKAMLSGP-GQFAENEADEVHFREIPSHVLSKVYA 75
           V +++  SD +  I ++++A++   + A L G  G F    A  +   EI  ++ +  Y 
Sbjct: 416 VKIEINYSDLNYKITQQQKAVSVSELLADLGGQLGLFCG--ASLITIIEIIEYLFTNFYW 473

Query: 76  LCMYFMYKVRYANSSTEIPE 95
           +C++F+ K+      T  P+
Sbjct: 474 ICIFFLLKISEMTQWTPPPQ 493


>gi|163914394 DEAQ box polypeptide 1 (RNA-dependent ATPase) [Homo
           sapiens]
          Length = 717

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 93  IPEFPVAPEIALELLMAANFLDC 115
           + EFP+APE+A  LL +  F DC
Sbjct: 465 LSEFPLAPELAKALLASCEF-DC 486


>gi|239747654 PREDICTED: hypothetical protein XP_002348126 [Homo
          sapiens]
          Length = 1032

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 11 CEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQ 51
          C+ P A+    +   G   +    +A+ SG  KA++SGPG+
Sbjct: 23 CQPPKAI----VSGPGKAIVSGPGKAIVSGPGKAIVSGPGK 59



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 21  LILSDGHEFIVKKERALTSGTIKAMLSGPGQ 51
           ++ S G   +    +A+ SG  KA++SGPG+
Sbjct: 669 IVSSPGKAIVSSLGKAIVSGPGKAIVSGPGK 699



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 11  CEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQ 51
           C+ P A+    +   G   +    +A+ SG  KA++SGPG+
Sbjct: 864 CQPPKAI----VSGPGKAIVSGPGKAIVSGPGKAIVSGPGK 900


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,339,009
Number of Sequences: 37866
Number of extensions: 153357
Number of successful extensions: 398
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 87
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.