Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GSG1L Sequence: fasta or formatted (176aa) NCBI GI: 21389571
Description:

GSG1-like isoform 2

Referenced in:

Testes and Sperm

Other entries for this name:
alt prot [331aa] GSG1-like isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         12           2
 C cysteine            3.4          6           2
 D aspartate           4.5          8           1
 E glutamate           8.0         14           2
 F phenylalanine       6.2         11           1
 G glycine             5.1          9           1
 H histidine           5.1          9           1
 I isoleucine          2.3          4           1
 K lysine              3.4          6           1
 L leucine             7.4         13           2
 M methionine          4.0          7           2
 N asparagine          2.3          4           1
 P proline             4.5          8           1
 Q glutamine           3.4          6           1
 R arginine            6.8         12           1
 S serine              7.4         13           2
 T threonine           5.1          9           2
 V valine              6.8         12           1
 W tryptophan          4.0          7           1
 Y tyrosine            3.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GSG1-like isoform 2 
GSG1L                 1.000   GSG1-like isoform 1 
GSG1                  0.331   germ cell associated 1 isoform 4 
GSG1                  0.331   germ cell associated 1 isoform 2 
LOC644070             0.301   PREDICTED: germ cell-specific gene 1-like protein 2...
LOC644070             0.301   PREDICTED: germ cell-specific gene 1-like protein 2...
LOC644070             0.301   PREDICTED: germ cell-specific gene 1-like protein 2...
CACNG7                0.039   voltage-dependent calcium channel gamma-7 subunit [H...
CACNG5                0.022   voltage-dependent calcium channel gamma-5 subunit is...
CACNG4                0.020   voltage-dependent calcium channel gamma-4 subunit [Ho...
FAM161A               0.014   hypothetical protein LOC84140 
CACNG3                0.014   voltage-dependent calcium channel gamma-3 subunit [Ho...
PMP22                 0.014   peripheral myelin protein 22 
PMP22                 0.014   peripheral myelin protein 22 
PMP22                 0.014   peripheral myelin protein 22 
FAM104A               0.011   hypothetical protein LOC84923 isoform 2 
PCNT                  0.008   pericentrin 
KIAA1529              0.008   hypothetical protein LOC57653 
FAM104A               0.008   hypothetical protein LOC84923 isoform 1 
ADRB1                 0.008   beta-1-adrenergic receptor 
CACNG2                0.008   voltage-dependent calcium channel gamma-2 subunit [Ho...
ACAP3                 0.008   ArfGAP with coiled-coil, ankyrin repeat and PH doma...
KIAA1429              0.008   hypothetical protein LOC25962 isoform 1 
KIAA1429              0.008   hypothetical protein LOC25962 isoform 2 
PLOD3                 0.006   procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 pr...
CACNG5                0.006   voltage-dependent calcium channel gamma-5 subunit iso...
CACNG8                0.006   voltage-dependent calcium channel gamma-8 subunit [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press