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Search of human proteins with 169210715
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169210715 PREDICTED: hypothetical protein [Homo sapiens]
(176 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169210715 PREDICTED: hypothetical protein [Homo sapiens] 367 e-102
gi|169211489 PREDICTED: hypothetical protein [Homo sapiens] 364 e-101
gi|148806884 AKT1 substrate 1 (proline-rich) [Homo sapiens] 36 0.020
gi|148806906 AKT1 substrate 1 (proline-rich) [Homo sapiens] 36 0.020
gi|148806896 AKT1 substrate 1 (proline-rich) [Homo sapiens] 36 0.020
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 35 0.044
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 35 0.044
gi|63055059 SH3 and PX domains 2B [Homo sapiens] 33 0.098
gi|169214772 PREDICTED: similar to hCG1783157 [Homo sapiens] 33 0.17
gi|239751973 PREDICTED: hypothetical protein XP_002348052 [Homo ... 33 0.17
gi|239746455 PREDICTED: hypothetical protein XP_002344215 [Homo ... 33 0.17
gi|148613882 homeobox A4 [Homo sapiens] 32 0.28
gi|50843820 sickle tail isoform 1 [Homo sapiens] 32 0.37
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 32 0.37
gi|188536004 zinc finger protein 469 [Homo sapiens] 31 0.49
gi|32307126 nuclear receptor coactivator 3 isoform a [Homo sapiens] 31 0.63
gi|32307124 nuclear receptor coactivator 3 isoform b [Homo sapiens] 31 0.63
gi|169167066 PREDICTED: hypothetical protein [Homo sapiens] 31 0.63
gi|113416187 PREDICTED: hypothetical protein [Homo sapiens] 31 0.63
gi|113415691 PREDICTED: hypothetical protein [Homo sapiens] 31 0.63
gi|209862893 zinc finger, MYND-type containing 15 isoform 1 [Hom... 31 0.63
gi|14149999 zinc finger, MYND-type containing 15 isoform 2 [Homo... 31 0.63
gi|197245386 hypothetical protein LOC387856 [Homo sapiens] 31 0.63
gi|14589893 cadherin 4, type 1 preproprotein [Homo sapiens] 30 0.83
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 30 1.1
gi|151101384 coenzyme Q10 homolog A isoform a [Homo sapiens] 30 1.1
gi|22027541 programmed cell death 7 [Homo sapiens] 30 1.1
gi|56117844 synovial sarcoma translocation, chromosome 18 isofor... 30 1.4
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 30 1.4
>gi|169210715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 367 bits (941), Expect = e-102
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 MSERKQQRPSTCPPGPAPSSPTVSRPFPETTRDAGDKDEGKESFPSPNGALILLPTLLVL 60
MSERKQQRPSTCPPGPAPSSPTVSRPFPETTRDAGDKDEGKESFPSPNGALILLPTLLVL
Sbjct: 1 MSERKQQRPSTCPPGPAPSSPTVSRPFPETTRDAGDKDEGKESFPSPNGALILLPTLLVL 60
Query: 61 DFSSFLKGQRVMKMDQDPPGEVKNMEWHHNQNRRGLRSEEPVTKLAYPEGTTRVGEPGGH 120
DFSSFLKGQRVMKMDQDPPGEVKNMEWHHNQNRRGLRSEEPVTKLAYPEGTTRVGEPGGH
Sbjct: 61 DFSSFLKGQRVMKMDQDPPGEVKNMEWHHNQNRRGLRSEEPVTKLAYPEGTTRVGEPGGH 120
Query: 121 PEASRPPAQPQTPGRVLRACSVLGRTPNSSQQEATLTELPGERCAQGGRLRDPEAA 176
PEASRPPAQPQTPGRVLRACSVLGRTPNSSQQEATLTELPGERCAQGGRLRDPEAA
Sbjct: 121 PEASRPPAQPQTPGRVLRACSVLGRTPNSSQQEATLTELPGERCAQGGRLRDPEAA 176
>gi|169211489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 364 bits (934), Expect = e-101
Identities = 175/176 (99%), Positives = 175/176 (99%)
Query: 1 MSERKQQRPSTCPPGPAPSSPTVSRPFPETTRDAGDKDEGKESFPSPNGALILLPTLLVL 60
MSERKQQRPSTCPPGPAPSSPTVSRPFPETTRDAGDKDEGKESFPSPNGALILLPTLLVL
Sbjct: 1 MSERKQQRPSTCPPGPAPSSPTVSRPFPETTRDAGDKDEGKESFPSPNGALILLPTLLVL 60
Query: 61 DFSSFLKGQRVMKMDQDPPGEVKNMEWHHNQNRRGLRSEEPVTKLAYPEGTTRVGEPGGH 120
DFSSFLKGQRVMKMDQDPPGEVKNMEWHHNQNRRGLRSEEPVTKLAYPEGTTRVGEPGGH
Sbjct: 61 DFSSFLKGQRVMKMDQDPPGEVKNMEWHHNQNRRGLRSEEPVTKLAYPEGTTRVGEPGGH 120
Query: 121 PEASRPPAQPQTPGRVLRACSVLGRTPNSSQQEATLTELPGERCAQGGRLRDPEAA 176
PEASRPPAQPQTPGRVLRACSVLGRTPNSSQQEAT TELPGERCAQGGRLRDPEAA
Sbjct: 121 PEASRPPAQPQTPGRVLRACSVLGRTPNSSQQEATPTELPGERCAQGGRLRDPEAA 176
>gi|148806884 AKT1 substrate 1 (proline-rich) [Homo sapiens]
Length = 256
Score = 35.8 bits (81), Expect = 0.020
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 8 RPSTCPPGPAPSSPTVSRPFPETTRDAGDKDE---------GKESFPSPNGALILL 54
RP PP P P SPT S P P R+ ++DE G++ S NG L ++
Sbjct: 76 RPPAPPPAPQPPSPTPSPPRPTLAREDNEEDEDEPTETETSGEQLGISDNGGLFVM 131
>gi|148806906 AKT1 substrate 1 (proline-rich) [Homo sapiens]
Length = 256
Score = 35.8 bits (81), Expect = 0.020
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 8 RPSTCPPGPAPSSPTVSRPFPETTRDAGDKDE---------GKESFPSPNGALILL 54
RP PP P P SPT S P P R+ ++DE G++ S NG L ++
Sbjct: 76 RPPAPPPAPQPPSPTPSPPRPTLAREDNEEDEDEPTETETSGEQLGISDNGGLFVM 131
>gi|148806896 AKT1 substrate 1 (proline-rich) [Homo sapiens]
Length = 256
Score = 35.8 bits (81), Expect = 0.020
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 8 RPSTCPPGPAPSSPTVSRPFPETTRDAGDKDE---------GKESFPSPNGALILL 54
RP PP P P SPT S P P R+ ++DE G++ S NG L ++
Sbjct: 76 RPPAPPPAPQPPSPTPSPPRPTLAREDNEEDEDEPTETETSGEQLGISDNGGLFVM 131
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 34.7 bits (78), Expect = 0.044
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 78 PPGEVKNMEWHHNQNRRGLRSEEPVTKLAYPEGTTRVGEPGGHP--------------EA 123
PPG ++ + RG EP + PEG T+ PG P EA
Sbjct: 332 PPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQA--PGVEPSNGLEKPARELNGSEA 389
Query: 124 SRPPAQPQTPGRVLRACSVLGRTPNSSQQEATLTELPGERCAQGGRL 170
+ P P+ R + P SSQ+ A E P CAQGGR+
Sbjct: 390 ATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPE-PQGSCAQGGRV 435
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 34.7 bits (78), Expect = 0.044
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 78 PPGEVKNMEWHHNQNRRGLRSEEPVTKLAYPEGTTRVGEPGGHP--------------EA 123
PPG ++ + RG EP + PEG T+ PG P EA
Sbjct: 332 PPGSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQA--PGVEPSNGLEKPARELNGSEA 389
Query: 124 SRPPAQPQTPGRVLRACSVLGRTPNSSQQEATLTELPGERCAQGGRL 170
+ P P+ R + P SSQ+ A E P CAQGGR+
Sbjct: 390 ATPRDSPRPGKPDERDIWPPAQAPTSSQELAGAPE-PQGSCAQGGRV 435
>gi|63055059 SH3 and PX domains 2B [Homo sapiens]
Length = 911
Score = 33.5 bits (75), Expect = 0.098
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 1 MSERKQQRPSTCPPGPAPSSPT--VSRPFPETTRDAGDKDEGKESFPSPN-GALILLPTL 57
+ E QQRP P P P T SRP PE G + EG ES +P G +L+P
Sbjct: 747 LQEAPQQRPVVPPRRPPPPKKTSSSSRPLPEV---RGPQCEGHESRAAPTPGRALLVPPK 803
Query: 58 LVLDFSSFLKGQ 69
S+ L GQ
Sbjct: 804 AKPFLSNSLGGQ 815
>gi|169214772 PREDICTED: similar to hCG1783157 [Homo sapiens]
Length = 538
Score = 32.7 bits (73), Expect = 0.17
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 11 TCPPGPAPSSPTVSRPFPETTRDAGDKDEGKESFPSPNGALILLPTLLVLDFSSFLKGQR 70
TCPPGPA + T PF + E +E +P G L ++++L S +K
Sbjct: 216 TCPPGPAWGADT-RIPFEKLMEAVAHSPENREC--APYGEQASLASVIML--SCLMKTVL 270
Query: 71 VMKMDQDPPGEVKNMEWHHNQNRRGLRSE 99
+ K+++ + + +EW NQ L E
Sbjct: 271 LAKLNECSSLDSERIEWAINQEGASLPGE 299
>gi|239751973 PREDICTED: hypothetical protein XP_002348052 [Homo
sapiens]
Length = 537
Score = 32.7 bits (73), Expect = 0.17
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 11 TCPPGPAPSSPTVSRPFPETTRDAGDKDEGKESFPSPNGALILLPTLLVLDFSSFLKGQR 70
TCPPGPA + T PF + E +E +P G L ++++L S +K
Sbjct: 216 TCPPGPAWGADT-RIPFEKLMEAVAHSPENREC--APYGEQASLASVIML--SCLMKTVL 270
Query: 71 VMKMDQDPPGEVKNMEWHHNQNRRGLRSE 99
+ K+++ + + +EW NQ L E
Sbjct: 271 LAKLNECSSLDSERIEWAINQEGASLPGE 299
>gi|239746455 PREDICTED: hypothetical protein XP_002344215 [Homo
sapiens]
Length = 537
Score = 32.7 bits (73), Expect = 0.17
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 11 TCPPGPAPSSPTVSRPFPETTRDAGDKDEGKESFPSPNGALILLPTLLVLDFSSFLKGQR 70
TCPPGPA + T PF + E +E +P G L ++++L S +K
Sbjct: 216 TCPPGPAWGADT-RIPFEKLMEAVAHSPENREC--APYGEQASLASVIML--SCLMKTVL 270
Query: 71 VMKMDQDPPGEVKNMEWHHNQNRRGLRSE 99
+ K+++ + + +EW NQ L E
Sbjct: 271 LAKLNECSSLDSERIEWAINQEGASLPGE 299
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 32.0 bits (71), Expect = 0.28
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 106 AYPEGTTRVGEPGGHPEASRPPAQPQTPGRVLRACSVL 143
AYP G PG P+ +PPAQ + P L A VL
Sbjct: 99 AYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLHASHVL 136
>gi|50843820 sickle tail isoform 1 [Homo sapiens]
Length = 1943
Score = 31.6 bits (70), Expect = 0.37
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 9/128 (7%)
Query: 7 QRPSTCPPGPAPSSPTVSRPFPETTRDAGDKDEGKESFPSPNGALILLPTLLVLDFSS-- 64
Q +T P P+S P P TT + D++E +E L +D +S
Sbjct: 1093 QTRATKYPAEEPASAWTPSPPPVTTSSSKDEEEEEEEGDKIMAELQAFQKCSFMDVNSNS 1152
Query: 65 FLKGQRVMKMDQD-------PPGEVKNMEWHHNQNRRGLRSEEPVTKLAYPEGTTRVGEP 117
+ R +D PP E KN+E+ H R+ E ++ + + TT P
Sbjct: 1153 HAEPSRADSHVKDTRSGATVPPKEKKNLEFFHEDVRKSDVEYENGPQMEFQKVTTGAVRP 1212
Query: 118 GGHPEASR 125
P+ R
Sbjct: 1213 SDPPKWER 1220
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 31.6 bits (70), Expect = 0.37
Identities = 35/137 (25%), Positives = 49/137 (35%), Gaps = 12/137 (8%)
Query: 7 QRPSTCPPGP--APSSPTVSRPFPETTRDAGDKDEGKESFPSPNGALILLPTLLVLDFSS 64
Q PS CPPGP P P P +G++ P P G LP + L
Sbjct: 173 QCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPPGP-AGLPGSVGLQGP- 230
Query: 65 FLKGQRVMKMDQDPPGEVKNMEWH------HNQNRRGLRSEEPVTKLAYPEGTTRVGEPG 118
+G R + PPG+ + + + G R E P+G P
Sbjct: 231 --RGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPK 288
Query: 119 GHPEASRPPAQPQTPGR 135
G P + P +P PG+
Sbjct: 289 GTPGVAGPSGEPGMPGK 305
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 31.2 bits (69), Expect = 0.49
Identities = 44/175 (25%), Positives = 61/175 (34%), Gaps = 25/175 (14%)
Query: 8 RPSTCPPGPAPSSPTVSRPFPETTRDAGDKDE--------------GKESFPSPNGALIL 53
+P+T P PSS P P T G + + K SFPS + A
Sbjct: 3692 KPATPKAKPGPSSQGSGSPRPGTKTGGGSQPQPASGQLQSETATTPAKPSFPSRSPAPER 3751
Query: 54 LPTLLVLDFSSFLKGQRVMKMDQDPPGEVKNMEWHHNQNRRGLRSEEPVTKLAYPEGTTR 113
LP S KG R +Q P G + E + +R ++ P +
Sbjct: 3752 LPAR--AQAKSCTKGPREAG-EQGPHGSLGPKEKGESSTKR------KKGQVPGPARSES 3802
Query: 114 VGEPGGHPEASRPPAQPQTPGRVLRACSVLGRTPNSSQQEATLTELPGERCAQGG 168
VG G P A P P+TP + VL P + Q +R A+ G
Sbjct: 3803 VGSFGRAPSA--PDKPPRTPRKQATPSRVLPTKPKPNSQNKPRPPPSEQRKAEPG 3855
>gi|32307126 nuclear receptor coactivator 3 isoform a [Homo sapiens]
Length = 1424
Score = 30.8 bits (68), Expect = 0.63
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 108 PEGTTRVGEPGGHPEAS--RPPAQPQTPGRVLRACSVLGRTPNSSQQEATLTELPGE 162
P + +G PGG S RP P LR+ S+ G P QQ+ L PGE
Sbjct: 932 PMNSNSMGRPGGDYNTSLPRPALGGSIPTLPLRSNSIPGARPVLQQQQQMLQMRPGE 988
>gi|32307124 nuclear receptor coactivator 3 isoform b [Homo sapiens]
Length = 1420
Score = 30.8 bits (68), Expect = 0.63
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 108 PEGTTRVGEPGGHPEAS--RPPAQPQTPGRVLRACSVLGRTPNSSQQEATLTELPGE 162
P + +G PGG S RP P LR+ S+ G P QQ+ L PGE
Sbjct: 932 PMNSNSMGRPGGDYNTSLPRPALGGSIPTLPLRSNSIPGARPVLQQQQQMLQMRPGE 988
>gi|169167066 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 30.8 bits (68), Expect = 0.63
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 98 SEEPVTKLAYPEGTTRVGEPGGHPEASRPPAQPQTPG---RVLRACSVL 143
S +P + GTT P P RPP P P R+LRACS+L
Sbjct: 16 SAQPPSSADTVPGTTYPPPPPPPPPTPRPPPPPPLPPPGPRLLRACSLL 64
>gi|113416187 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 30.8 bits (68), Expect = 0.63
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 98 SEEPVTKLAYPEGTTRVGEPGGHPEASRPPAQPQTPG---RVLRACSVL 143
S +P + GTT P P RPP P P R+LRACS+L
Sbjct: 16 SAQPPSSADTVPGTTYPPPPPPPPPTPRPPPPPPLPPPGPRLLRACSLL 64
>gi|113415691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 30.8 bits (68), Expect = 0.63
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 98 SEEPVTKLAYPEGTTRVGEPGGHPEASRPPAQPQTPG---RVLRACSVL 143
S +P + GTT P P RPP P P R+LRACS+L
Sbjct: 16 SAQPPSSADTVPGTTYPPPPPPPPPTPRPPPPPPLPPPGPRLLRACSLL 64
>gi|209862893 zinc finger, MYND-type containing 15 isoform 1 [Homo
sapiens]
Length = 742
Score = 30.8 bits (68), Expect = 0.63
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 14 PGPAPSSPTVSRPFPETTRDAGDKDEGK 41
PGP P SPT S P T R G+K G+
Sbjct: 709 PGPPPPSPTPSAPPAPTRRRRGEKKPGR 736
>gi|14149999 zinc finger, MYND-type containing 15 isoform 2 [Homo
sapiens]
Length = 703
Score = 30.8 bits (68), Expect = 0.63
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 14 PGPAPSSPTVSRPFPETTRDAGDKDEGK 41
PGP P SPT S P T R G+K G+
Sbjct: 670 PGPPPPSPTPSAPPAPTRRRRGEKKPGR 697
>gi|197245386 hypothetical protein LOC387856 [Homo sapiens]
Length = 194
Score = 30.8 bits (68), Expect = 0.63
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 114 VGEPGGHPEASRPPAQPQTPGRVLRACSVLGRTPNSSQQEATLTELP 160
+G GG P +P+TP + +LGR P ++E E+P
Sbjct: 102 LGVVGGKGSFQSDPQEPETPSPGIGDSGLLGRDPEDEEEEEEEKEMP 148
>gi|14589893 cadherin 4, type 1 preproprotein [Homo sapiens]
Length = 916
Score = 30.4 bits (67), Expect = 0.83
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 67 KGQRVMKMDQDPPGEVKNMEWHHNQNRRGLR 97
KG++V+ +D PP + + W +QN GLR
Sbjct: 135 KGKKVVALDPSPPPKDTLLPWPQHQNANGLR 165
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 30.0 bits (66), Expect = 1.1
Identities = 27/95 (28%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 79 PGEVKNMEWHHNQNRRGLRSEEPVTKLAYPEGTTRVGEPGGHPEASRPPAQPQTPGRVLR 138
P + + H + RRG R P P G PGG A P TP R
Sbjct: 69 PAQRSSCTQPHRRRRRGTRRLPPALT---PAGPYHSARPGGGARARAARVSPPTPPRSGL 125
Query: 139 ACSVLGRTPNSSQQEATLTELPGERCAQGGRLRDP 173
+V TP + G R + GGRL P
Sbjct: 126 DPAVPSPTP--APLARCRQTRAGLRLSTGGRLSPP 158
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 30.0 bits (66), Expect = 1.1
Identities = 27/95 (28%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 79 PGEVKNMEWHHNQNRRGLRSEEPVTKLAYPEGTTRVGEPGGHPEASRPPAQPQTPGRVLR 138
P + + H + RRG R P P G PGG A P TP R
Sbjct: 69 PAQRSSCTQPHRRRRRGTRRLPPALT---PAGPYHSARPGGGARARAARVSPPTPPRSGL 125
Query: 139 ACSVLGRTPNSSQQEATLTELPGERCAQGGRLRDP 173
+V TP + G R + GGRL P
Sbjct: 126 DPAVPSPTP--APLARCRQTRAGLRLSTGGRLSPP 158
>gi|151101384 coenzyme Q10 homolog A isoform a [Homo sapiens]
Length = 247
Score = 30.0 bits (66), Expect = 1.1
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 108 PEGTTRVGE--------PGGHPEASRPPAQPQTPGRVLRACSVLGRTPNSSQQEATLTEL 159
P GT E PG P P P P R L +CS+L P ++Q A L
Sbjct: 10 PAGTRAAAERCCRLSLSPGAQPAPPPGPLPPPRPMRFLTSCSLL--LPRAAQILAAEAGL 67
Query: 160 PGERCAQG 167
P R G
Sbjct: 68 PSSRSFMG 75
>gi|22027541 programmed cell death 7 [Homo sapiens]
Length = 485
Score = 30.0 bits (66), Expect = 1.1
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 13 PPGPAPSSPTVSRPFPETTRDAGDKDEGKESFPSP 47
PP P P P RPFP T DAG++ P P
Sbjct: 84 PPPPLPPPPPQCRPFPGT--DAGERPRPPPPGPGP 116
>gi|56117844 synovial sarcoma translocation, chromosome 18 isoform 2
[Homo sapiens]
Length = 387
Score = 29.6 bits (65), Expect = 1.4
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 76 QDPPGEVKNMEWHHNQ--NRRGLRSEEPVTKLAYPEGTTRVGEP-----GGHPEASRPPA 128
Q PP + E ++ + G E + + YP+G ++ G+ G P+ PP
Sbjct: 258 QGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQ 317
Query: 129 QPQTPGR 135
Q Q PG+
Sbjct: 318 QQQYPGQ 324
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 29.6 bits (65), Expect = 1.4
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 46 SPNGALILLPTLLVLDFSSFLKGQRVMKMDQDPPGEVKNMEWHHNQNRRGLRSEEPVTKL 105
SP+ + LVL S+FL +V+ +++ P G+ ++W L+S E L
Sbjct: 655 SPSACSVRGGEELVLTGSNFLPDSKVVFIERGPDGK---LQWEEEATVNRLQSNEVTLTL 711
Query: 106 AYPE-GTTRVGEP 117
PE RV P
Sbjct: 712 TVPEYSNKRVSRP 724
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,914,040
Number of Sequences: 37866
Number of extensions: 585735
Number of successful extensions: 3464
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 3293
Number of HSP's gapped (non-prelim): 303
length of query: 176
length of database: 18,247,518
effective HSP length: 95
effective length of query: 81
effective length of database: 14,650,248
effective search space: 1186670088
effective search space used: 1186670088
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.