Guide to the Human Genome
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Name: C12orf68 Sequence: fasta or formatted (194aa) NCBI GI: 197245386
Description:

hypothetical protein LOC387856

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         13           1
 C cysteine            2.1          4           1
 D aspartate           7.7         15           2
 E glutamate          12.4         24           7
 F phenylalanine       1.0          2           1
 G glycine            11.9         23           2
 H histidine           1.5          3           1
 I isoleucine          3.6          7           1
 K lysine              2.6          5           1
 L leucine            10.3         20           2
 M methionine          5.2         10           1
 N asparagine          1.0          2           1
 P proline             8.8         17           1
 Q glutamine           5.2         10           1
 R arginine            3.1          6           1
 S serine              7.2         14           2
 T threonine           3.6          7           2
 V valine              5.7         11           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC387856 
ZNF335                0.030   zinc finger protein 335 
DENND1A               0.030   DENN/MADD domain containing 1A isoform 1 
AEBP2                 0.030   AE binding protein 2 isoform b 
AEBP2                 0.030   AE binding protein 2 isoform a 
ADRA2B                0.027   alpha-2B-adrenergic receptor 
MNX1                  0.027   homeo box HB9 
LOC65998              0.025   hypothetical protein LOC65998 
RXRB                  0.025   retinoid X receptor, beta 
PLCB3                 0.025   phospholipase C beta 3 
HSF4                  0.025   heat shock transcription factor 4 isoform a 
CLIP3                 0.025   CAP-GLY domain containing linker protein 3 
SLC4A2                0.022   solute carrier family 4, anion exchanger, member 2 ...
NEK9                  0.022   NIMA-related kinase 9 
PIAS4                 0.022   protein inhibitor of activated STAT, 4 
STAC3                 0.022   SH3 and cysteine rich domain 3 
HS6ST3                0.022   PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [...
SCAF1                 0.022   SR-related CTD-associated factor 1 
DEK                   0.022   DEK oncogene isoform 1 
HS6ST3                0.022   heparan sulfate 6-O-sulfotransferase 3 
GTF3C3                0.022   general transcription factor IIIC, polypeptide 3, 102...
NKX1-2                0.019   NK1 homeobox 2 
CACNA1F               0.019   calcium channel, voltage-dependent, L type, alpha 1F...
SMAP1                 0.019   stromal membrane-associated GTPase-activating prote...
RBM6                  0.019   RNA binding motif protein 6 
TAOK2                 0.019   TAO kinase 2 isoform 2 
SFRS14                0.019   splicing factor, arginine/serine-rich 14 
SFRS14                0.019   splicing factor, arginine/serine-rich 14 
RTN4                  0.019   reticulon 4 isoform B 
RTN4                  0.019   reticulon 4 isoform D 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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