Guide to the Human Genome
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Name: LOC100287235 Sequence: fasta or formatted (118aa) NCBI GI: 239741607
Description:

PREDICTED: hypothetical protein XP_002342248

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         13           2
 C cysteine            5.1          6           2
 D aspartate           2.5          3           1
 E glutamate           5.1          6           1
 F phenylalanine       0.0          0           0
 G glycine            10.2         12           2
 H histidine           4.2          5           2
 I isoleucine          0.0          0           0
 K lysine              4.2          5           1
 L leucine             5.9          7           1
 M methionine          0.8          1           1
 N asparagine          2.5          3           1
 P proline            11.9         14           2
 Q glutamine           5.1          6           1
 R arginine           11.9         14           3
 S serine              5.9          7           1
 T threonine           5.9          7           2
 V valine              5.1          6           2
 W tryptophan          2.5          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342248 
LOC100290944          1.000   PREDICTED: hypothetical protein XP_002348258 
LOC729519             0.043   PREDICTED: hypothetical protein 
LOC730032             0.043   PREDICTED: similar to Rho guanine nucleotide exchan...
LOC729506             0.034   PREDICTED: hypothetical protein 
LOC729506             0.034   PREDICTED: hypothetical protein 
LOC729506             0.034   PREDICTED: hypothetical protein 
ARTN                  0.034   neurotrophic factor artemin isoform 2 
ARTN                  0.034   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.034   neurotrophic factor artemin isoform 3 precursor [Ho...
ARTN                  0.034   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.034   neurotrophic factor artemin isoform 3 precursor [Ho...
IQSEC2                0.034   IQ motif and Sec7 domain 2 isoform 2 
IQSEC2                0.034   IQ motif and Sec7 domain 2 isoform1 
SFPQ                  0.034   splicing factor proline/glutamine rich (polypyrimidin...
GIYD1                 0.030   GIY-YIG domain containing 1 isoform 1 
GIYD2                 0.030   GIY-YIG domain containing 2 isoform 1 
FOLR3                 0.030   folate receptor 3 precursor 
BAI1                  0.030   brain-specific angiogenesis inhibitor 1 precursor [...
COL4A1                0.026   alpha 1 type IV collagen preproprotein 
EVC2                  0.026   limbin 
MPN2                  0.026   marapsin 2 
MYOD1                 0.026   myogenic differentiation 1 
MUS81                 0.026   MUS81 endonuclease homolog 
C8orf58               0.026   hypothetical protein LOC541565 
LOC100131455          0.021   PREDICTED: hypothetical protein 
LOC100131455          0.021   PREDICTED: hypothetical protein 
LOC729370             0.021   PREDICTED: hypothetical protein 
LOC100131455          0.021   PREDICTED: hypothetical protein 
SYNJ1                 0.021   synaptojanin 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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