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Search of human proteins with 169210156
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169210156 PREDICTED: hypothetical protein [Homo sapiens]
(202 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169209641 PREDICTED: hypothetical protein [Homo sapiens] 383 e-107
gi|169210610 PREDICTED: hypothetical protein [Homo sapiens] 383 e-107
gi|169210156 PREDICTED: hypothetical protein [Homo sapiens] 383 e-107
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens] 37 0.011
gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain ... 36 0.019
gi|169167715 PREDICTED: hypothetical protein [Homo sapiens] 34 0.097
gi|55741709 RNA binding motif protein 25 [Homo sapiens] 33 0.13
gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo ... 33 0.16
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 33 0.16
gi|239757964 PREDICTED: hypothetical protein [Homo sapiens] 33 0.22
gi|14670268 RD RNA-binding protein [Homo sapiens] 32 0.28
gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens] 32 0.28
gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens] 32 0.28
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 32 0.37
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 32 0.37
gi|62244004 modulator of estrogen induced transcription isoform ... 32 0.37
gi|63176611 modulator of estrogen induced transcription isoform ... 32 0.37
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 32 0.48
gi|239747891 PREDICTED: hypothetical protein [Homo sapiens] 31 0.63
gi|239750438 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens] 30 1.1
gi|148746195 trichohyalin [Homo sapiens] 30 1.1
gi|188497714 transmembrane and coiled-coil domain family 3 [Homo... 30 1.4
gi|7661788 mediator complex subunit 4 [Homo sapiens] 30 1.8
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 29 2.4
gi|239747174 PREDICTED: hypothetical protein XP_002343931, parti... 29 2.4
gi|213385278 TNF receptor-associated factor 3 interacting protei... 29 3.1
gi|20070262 TNF receptor-associated factor 3 interacting protein... 29 3.1
gi|219521893 coiled-coil transcriptional coactivator isoform 2 [... 29 3.1
gi|14149742 coiled-coil transcriptional coactivator isoform 1 [H... 29 3.1
>gi|169209641 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 383 bits (983), Expect = e-107
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MAGGDLVKDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERR 60
MAGGDLVKDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERR
Sbjct: 1 MAGGDLVKDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERR 60
Query: 61 RVTGEVRERDLLRVTGDVRDRDLLRVTGDVLDLDLLRVIGEVLLRDRLLVTGGVLDLDLL 120
RVTGEVRERDLLRVTGDVRDRDLLRVTGDVLDLDLLRVIGEVLLRDRLLVTGGVLDLDLL
Sbjct: 61 RVTGEVRERDLLRVTGDVRDRDLLRVTGDVLDLDLLRVIGEVLLRDRLLVTGGVLDLDLL 120
Query: 121 RVTGGVLERERRRVVGVLDLERRRVTGGVLDLDRLLLTGDALDRDLRRVTEVLDLDRLRL 180
RVTGGVLERERRRVVGVLDLERRRVTGGVLDLDRLLLTGDALDRDLRRVTEVLDLDRLRL
Sbjct: 121 RVTGGVLERERRRVVGVLDLERRRVTGGVLDLDRLLLTGDALDRDLRRVTEVLDLDRLRL 180
Query: 181 TGEVRDLDLRRLIRGVLDLDRR 202
TGEVRDLDLRRLIRGVLDLDRR
Sbjct: 181 TGEVRDLDLRRLIRGVLDLDRR 202
>gi|169210610 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 383 bits (983), Expect = e-107
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MAGGDLVKDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERR 60
MAGGDLVKDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERR
Sbjct: 1 MAGGDLVKDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERR 60
Query: 61 RVTGEVRERDLLRVTGDVRDRDLLRVTGDVLDLDLLRVIGEVLLRDRLLVTGGVLDLDLL 120
RVTGEVRERDLLRVTGDVRDRDLLRVTGDVLDLDLLRVIGEVLLRDRLLVTGGVLDLDLL
Sbjct: 61 RVTGEVRERDLLRVTGDVRDRDLLRVTGDVLDLDLLRVIGEVLLRDRLLVTGGVLDLDLL 120
Query: 121 RVTGGVLERERRRVVGVLDLERRRVTGGVLDLDRLLLTGDALDRDLRRVTEVLDLDRLRL 180
RVTGGVLERERRRVVGVLDLERRRVTGGVLDLDRLLLTGDALDRDLRRVTEVLDLDRLRL
Sbjct: 121 RVTGGVLERERRRVVGVLDLERRRVTGGVLDLDRLLLTGDALDRDLRRVTEVLDLDRLRL 180
Query: 181 TGEVRDLDLRRLIRGVLDLDRR 202
TGEVRDLDLRRLIRGVLDLDRR
Sbjct: 181 TGEVRDLDLRRLIRGVLDLDRR 202
>gi|169210156 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 383 bits (983), Expect = e-107
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MAGGDLVKDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERR 60
MAGGDLVKDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERR
Sbjct: 1 MAGGDLVKDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERR 60
Query: 61 RVTGEVRERDLLRVTGDVRDRDLLRVTGDVLDLDLLRVIGEVLLRDRLLVTGGVLDLDLL 120
RVTGEVRERDLLRVTGDVRDRDLLRVTGDVLDLDLLRVIGEVLLRDRLLVTGGVLDLDLL
Sbjct: 61 RVTGEVRERDLLRVTGDVRDRDLLRVTGDVLDLDLLRVIGEVLLRDRLLVTGGVLDLDLL 120
Query: 121 RVTGGVLERERRRVVGVLDLERRRVTGGVLDLDRLLLTGDALDRDLRRVTEVLDLDRLRL 180
RVTGGVLERERRRVVGVLDLERRRVTGGVLDLDRLLLTGDALDRDLRRVTEVLDLDRLRL
Sbjct: 121 RVTGGVLERERRRVVGVLDLERRRVTGGVLDLDRLLLTGDALDRDLRRVTEVLDLDRLRL 180
Query: 181 TGEVRDLDLRRLIRGVLDLDRR 202
TGEVRDLDLRRLIRGVLDLDRR
Sbjct: 181 TGEVRDLDLRRLIRGVLDLDRR 202
>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
Length = 1564
Score = 37.0 bits (84), Expect = 0.011
Identities = 31/79 (39%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 5 DLVKDRLP-RAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVT 63
D V DR RA R+ ER R ER RER R R+LER R R+ E+ R
Sbjct: 666 DRVDDRRDERARERDRERERDRERERERERERDREREKERELERERAREREREREKERDR 725
Query: 64 GEVRERDLLRVTGDVRDRD 82
R+RD R R+RD
Sbjct: 726 ERDRDRDHDRERERERERD 744
Score = 35.8 bits (81), Expect = 0.025
Identities = 28/73 (38%), Positives = 32/73 (43%)
Query: 10 RLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRER 69
R R V V D R +R RER R R+ ER R R+LER R RER
Sbjct: 660 REERRVDRVDDRRDERARERDRERERDRERERERERERDREREKERELERERARERERER 719
Query: 70 DLLRVTGDVRDRD 82
+ R RDRD
Sbjct: 720 EKERDRERDRDRD 732
Score = 32.0 bits (71), Expect = 0.37
Identities = 20/52 (38%), Positives = 25/52 (48%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERD 70
R+ E+ R ER RER R RD ER R R+ ER R +ER+
Sbjct: 699 REREKERELERERAREREREREKERDRERDRDRDHDRERERERERDREKERE 750
Score = 29.6 bits (65), Expect = 1.8
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 19 RDLERRRIASGERLRERLRGNSGVR----DLERRRIAGGVRDLERRRVTGEVRERDLLRV 74
R+LER R ER RE+ R R D ER R R+ ER R E RER+ R
Sbjct: 705 RELERERAREREREREKERDRERDRDRDHDRERERERERDREKERER-EREERERERERE 763
Query: 75 TGDVRDRD 82
R+R+
Sbjct: 764 RERERERE 771
Score = 28.5 bits (62), Expect = 4.1
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
R+ ER R ER +ER R+ ER R R+ +R R RER+ R
Sbjct: 689 RERERERERDREREKERELERERAREREREREKERDRERDRDRDHDRERERERERDREKE 748
Query: 79 RDRD 82
R+R+
Sbjct: 749 RERE 752
Score = 28.5 bits (62), Expect = 4.1
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 8 KDRLPRAVRGVRDLERRRIASGERLRE--RLRGNSGVRDLERRRIAGGVRDLERRRVTGE 65
+DRL R D ER R R RE R R+ +R R+ R+ ER +
Sbjct: 1296 RDRLQERDRYEHDRERERERRDTRQREWDRDADKDWPRNRDRDRLRERERERERDKRRDL 1355
Query: 66 VRERDLLRVTGDVRDRD 82
RER+ L RDRD
Sbjct: 1356 DRERERLISDSVERDRD 1372
>gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain
containing B [Homo sapiens]
Length = 546
Score = 36.2 bits (82), Expect = 0.019
Identities = 28/67 (41%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRV---T 75
R+LER E+ R+RL + R+ ERRR R LERRR R R R
Sbjct: 293 RELER------EKERQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRSRSRDRK 346
Query: 76 GDVRDRD 82
GD RDRD
Sbjct: 347 GDRRDRD 353
>gi|169167715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 33.9 bits (76), Expect = 0.097
Identities = 57/185 (30%), Positives = 75/185 (40%), Gaps = 26/185 (14%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
R++E+ R +R RER R RD +R+R G RD E E RER R
Sbjct: 82 REIEKDRDRQRKRDRERQRW----RDRDRKRERWGDRDRETETERQEERERQRDRKREKD 137
Query: 79 RDRDLLRVTGDVLDLDLLRVIGEVLLRDRLLVTGGVLDLDLLRVTGGVLERERRRVVGVL 138
R+R R G +D R I RDR G T +RER R
Sbjct: 138 RERQRQREIG----IDKDREIETEKDRDREREMG---------ETERYRDRERER----- 179
Query: 139 DLERRRVTGGVLDLDRLLLTGD-ALDRDLRRVTEVLDLDRLRLTGEVRDLDLRRLIRGVL 197
+++R T D +R D DRD ++ E D R R TG RD + R +
Sbjct: 180 --QKQRETRRDRDRERQREKEDRERDRDRQKERE-KDRYRERETGRDRDKERDRERQREK 236
Query: 198 DLDRR 202
D DR+
Sbjct: 237 DRDRQ 241
Score = 31.6 bits (70), Expect = 0.48
Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 14/174 (8%)
Query: 18 VRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGD 77
+R+ ER+R +R R + R R++E+ R RD ER+R R+RD R
Sbjct: 57 IRERERQRERERQRKRAKERHREKDREIEKDRDRQRKRDRERQR----WRDRDRKRERWG 112
Query: 78 VRDRDLLRVTGDVLDLDLLRVIGEVLLRDRLLVTGGVLDLDLLRVTGGVLERERRRVVGV 137
RDR+ T + R +DR + +D R +R+R R +G
Sbjct: 113 DRDRE----TETERQEERERQRDRKREKDRERQRQREIGIDKDREIETEKDRDREREMGE 168
Query: 138 LDLERRRVTGGVLDLDRLLLTGDALDRDLRRVTEVLDLDRLRLTGEVRDLDLRR 191
+ R R + +R DRD R E D +R R + R+ D R
Sbjct: 169 TERYRDR------ERERQKQRETRRDRDRERQREKEDRERDRDRQKEREKDRYR 216
Score = 27.3 bits (59), Expect = 9.0
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 17 GVRDLERRRIASGERLRERLRGNSGVRDLERRRIAG--------GVRDLERRRVTGEV-- 66
G RD E ER R+R R R+ +R+R G +D +R R GE
Sbjct: 112 GDRDRETETERQEERERQRDRKREKDRERQRQREIGIDKDREIETEKDRDREREMGETER 171
Query: 67 -----RERDLLRVTGDVRDRDLLRVTGD 89
RER R T RDR+ R D
Sbjct: 172 YRDRERERQKQRETRRDRDRERQREKED 199
>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
Length = 843
Score = 33.5 bits (75), Expect = 0.13
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 5 DLVKDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTG 64
++ K+R R R+ ERR ER RER R R+ ER R R ER R
Sbjct: 304 EIEKERRERERERERERERRE-REREREREREREKEKERERERERDRDRDRTKERDRDRD 362
Query: 65 EVRERDLLRVTGDVRDRDLLR 85
R+RD R R++D R
Sbjct: 363 RERDRDRDRERSSDRNKDRSR 383
Score = 32.7 bits (73), Expect = 0.22
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
RD +R R S +R ++R R RD ER R R+ ER R RER+ R
Sbjct: 365 RDRDRDRERSSDRNKDRSRSREKSRDRERER----ERERERERERERERERERERERERE 420
Query: 79 RDRD 82
R+R+
Sbjct: 421 RERE 424
Score = 32.3 bits (72), Expect = 0.28
Identities = 24/64 (37%), Positives = 30/64 (46%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
R ER R ER R+R R S R+ +R R RD ER R RER+ R
Sbjct: 353 RTKERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERE 412
Query: 79 RDRD 82
R+R+
Sbjct: 413 RERE 416
Score = 30.8 bits (68), Expect = 0.82
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
R+ ER R +R +ER R RD +R R R+ +R R + R+R+ R
Sbjct: 341 RERERERDRDRDRTKERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERE 400
Query: 79 RDRD 82
R+R+
Sbjct: 401 RERE 404
Score = 29.6 bits (65), Expect = 1.8
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRD--------LERRRVTGEVRERD 70
R+ ER R ER RER R R+ ER R RD ERR++ ++RE++
Sbjct: 395 REREREREREREREREREREREREREREREREKDKKRDREEDEEDAYERRKLERKLREKE 454
Score = 29.3 bits (64), Expect = 2.4
Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 5 DLVKDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTG 64
D KDR R+ RD ER R ER RER R R+ ER R R+ ER +
Sbjct: 376 DRNKDR-SRSREKSRDRERER----EREREREREREREREREREREREREREREREKDKK 430
Query: 65 EVRERD 70
RE D
Sbjct: 431 RDREED 436
Score = 28.5 bits (62), Expect = 4.1
Identities = 20/64 (31%), Positives = 29/64 (45%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
R+ ER R + R+R R RD +R R + +D R R RER+ R
Sbjct: 343 RERERDRDRDRTKERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERE 402
Query: 79 RDRD 82
R+R+
Sbjct: 403 RERE 406
Score = 27.7 bits (60), Expect = 6.9
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
RD +R R +R R+R R + +D R R R+ ER R RER+ R
Sbjct: 359 RDRDRER----DRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERERE 414
Query: 79 RDRD 82
R+R+
Sbjct: 415 RERE 418
>gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo
sapiens]
Length = 600
Score = 33.1 bits (74), Expect = 0.16
Identities = 27/83 (32%), Positives = 35/83 (42%)
Query: 5 DLVKDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTG 64
D +DR R R +R+R ER RE R R+ ER R R+ ER R
Sbjct: 267 DRDRDRDRRQKERERQTDRKRQRRTERDRETERKRERQRERERERERNRKRERERERERE 326
Query: 65 EVRERDLLRVTGDVRDRDLLRVT 87
R+R+ R R+R R T
Sbjct: 327 RERQRETERDREKERERKRKRQT 349
Score = 31.6 bits (70), Expect = 0.48
Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 13 RAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVR--ERD 70
R R RD E R +R RER R + R+ ER R R+ ER+R T R ER+
Sbjct: 287 RQRRTERDRETERKRERQRERERERERNRKRERERER----ERERERQRETERDREKERE 342
Query: 71 LLRVTGDVRDRDLLRVTG 88
R DR+ R TG
Sbjct: 343 RKRKRQTEMDRERNRQTG 360
Score = 31.6 bits (70), Expect = 0.48
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 8 KDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVR 67
+DR R R+ +R R ER R+ + G R+ E++R R+ ER R G R
Sbjct: 377 RDRQSAREREERERDRDRDRQKERERQTEKDRDGQRETEKQREREKDRESERGRERGRER 436
Query: 68 ERDLLRVTGDVRDRDLLRVT 87
E+ R+RD R T
Sbjct: 437 EKQ------KGRERDRERQT 450
Score = 31.2 bits (69), Expect = 0.63
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVR----DLERRRVTGEVRERDLLRV 74
R+ R+R ER RER R RD E+ R R D ER R TG R R
Sbjct: 311 RERNRKRERERERERERERQRETERDREKERERKRKRQTEMDRERNRQTGREGRRQAERE 370
Query: 75 TGDVRDRD 82
R+RD
Sbjct: 371 RERERERD 378
Score = 30.0 bits (66), Expect = 1.4
Identities = 21/64 (32%), Positives = 27/64 (42%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
R ERRR R R+R R R+ ER R RD +R + +ER+
Sbjct: 77 RKRERRREKDRHRKRDRHRERQRDREKERERQTDRERDRQREKERNRQKERERETEREGE 136
Query: 79 RDRD 82
R RD
Sbjct: 137 RGRD 140
Score = 29.6 bits (65), Expect = 1.8
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 5 DLVKDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTG 64
D +DR R R ER R E R R R G R+ ER+R A + ER R T
Sbjct: 110 DRERDRQREKERN-RQKERERETEREGERGRDRQTDGQRERERQRDA----EKERERQTD 164
Query: 65 EVRERDLLRVTGDVRDRD 82
R+R R R+R+
Sbjct: 165 RERQRQTERNRQKERERE 182
Score = 29.6 bits (65), Expect = 1.8
Identities = 22/64 (34%), Positives = 26/64 (40%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
R ER R E ER R RD +R+ + ER R + ERD R
Sbjct: 208 RGRERERERETETETERKRQTDRERDRQRKTEREREKQAERERASERETERDKERERERD 267
Query: 79 RDRD 82
RDRD
Sbjct: 268 RDRD 271
Score = 28.9 bits (63), Expect = 3.1
Identities = 48/163 (29%), Positives = 61/163 (37%), Gaps = 6/163 (3%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
R ER R ER ER RD ER R RD +RR+ E R+ D R
Sbjct: 236 RKTEREREKQAER--ERASERETERDKERERERDRDRDRDRRQKERE-RQTDRKRQRRTE 292
Query: 79 RDRDLLRVTGDVLDLDLLRVIGEVLLRDRLLVTGGVLDLDLLRVTGGVLERERRRVVGVL 138
RDR+ R + + R R+R + R ER+R+R +
Sbjct: 293 RDRETERKRERQRERERERERNRKRERERERERERERQRETERDREKERERKRKRQT-EM 351
Query: 139 DLERRRVTG--GVLDLDRLLLTGDALDRDLRRVTEVLDLDRLR 179
D ER R TG G +R DR R E + DR R
Sbjct: 352 DRERNRQTGREGRRQAERERERERERDRQSAREREERERDRDR 394
Score = 27.7 bits (60), Expect = 6.9
Identities = 21/63 (33%), Positives = 27/63 (42%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
RD E+ R +R R+R R R ER R + R R T RER+ R
Sbjct: 99 RDREKERERQTDRERDRQREKERNRQKERERETEREGERGRDRQTDGQRERERQRDAEKE 158
Query: 79 RDR 81
R+R
Sbjct: 159 RER 161
Score = 27.3 bits (59), Expect = 9.0
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 13 RAVRGVRDLERRRIASGERL--RERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERD 70
R R +D R+R ER RE+ R R+ +R+R R ER R T ER
Sbjct: 79 RERRREKDRHRKRDRHRERQRDREKERERQTDRERDRQREKERNRQKERERETEREGERG 138
Query: 71 LLRVTGDVRDRDLLR 85
R T R+R+ R
Sbjct: 139 RDRQTDGQRERERQR 153
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 33.1 bits (74), Expect = 0.16
Identities = 24/63 (38%), Positives = 27/63 (42%)
Query: 20 DLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDVR 79
D R R A+ +R RE RG R ER R RD R R RERD + R
Sbjct: 2148 DRNRERSANRDREREADRGKEWDRSRERSRNRERERDRRRDRDRSRSRERDRDKARDRER 2207
Query: 80 DRD 82
RD
Sbjct: 2208 GRD 2210
Score = 29.6 bits (65), Expect = 1.8
Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLR----V 74
R+ +R R R +R R S RD ER G D R R RERD R
Sbjct: 2133 REWDRHRDKDSSRDWDRNRERSANRDREREADRGKEWDRSRERSRNRERERDRRRDRDRS 2192
Query: 75 TGDVRDRDLLR 85
RDRD R
Sbjct: 2193 RSRERDRDKAR 2203
>gi|239757964 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 32.7 bits (73), Expect = 0.22
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
RD E++ +R RE+ +G RD R R R+ ER R T ++RD R T
Sbjct: 113 RDREKQTEIERDREREKQKGRERERDRGRERERDRDREKERERQTE--KDRDGQRETETE 170
Query: 79 RDRD 82
R+RD
Sbjct: 171 RERD 174
Score = 32.3 bits (72), Expect = 0.28
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLR----V 74
RD ER + ER R+R R RD E+ R +D + +R T RERD R
Sbjct: 123 RDREREKQKGRERERDRGRERERDRDREKERERQTEKDRDGQRETETERERDREREKQKE 182
Query: 75 TGDVRDRDLLRVT 87
RDRD R T
Sbjct: 183 RETERDRDRQRDT 195
Score = 32.0 bits (71), Expect = 0.37
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 8 KDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVR 67
+DR+ RD +R+R ER R+ N R+ +R + RD ER + G R
Sbjct: 81 RDRVREKTEKERDRDRKR--DRERRRKEKETN---RNRDREKQTEIERDREREKQKGRER 135
Query: 68 ERDLLRVTGDVRDRDLLRVTGDVLDLDLLRVIGEVLLRDR 107
ERD R RDR+ R D D R RDR
Sbjct: 136 ERDRGRERERDRDREKERERQTEKDRDGQRETETERERDR 175
Score = 29.6 bits (65), Expect = 1.8
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
+D + +R ER R+R R R+ ER R + ER R T RERD R T
Sbjct: 159 KDRDGQRETETERERDREREKQKERETERDRDRQRDTEKERERQTD--RERDRQRKTQTE 216
Query: 79 RDRD 82
R R+
Sbjct: 217 RQRE 220
Score = 28.5 bits (62), Expect = 4.1
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERR--RVTGEVRERDLLRVTG 76
R+ ER R + +ER R RD +R+ R+ +R R T RER R G
Sbjct: 183 RETERDRDRQRDTEKERERQTDRERDRQRKTQTERQRETDREGERETDRRRERQRDRDRG 242
Query: 77 DVRDRD 82
RDR+
Sbjct: 243 KERDRE 248
Score = 27.3 bits (59), Expect = 9.0
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRD------LERRRVTGEVRERDLL 72
R+ +R R ER ER R + ER R RD ER+R T ER+
Sbjct: 171 RERDREREKQKERETERDRDRQRDTEKERERQTDRERDRQRKTQTERQRETDREGERETD 230
Query: 73 RVTGDVRDRD 82
R RDRD
Sbjct: 231 RRRERQRDRD 240
>gi|14670268 RD RNA-binding protein [Homo sapiens]
Length = 380
Score = 32.3 bits (72), Expect = 0.28
Identities = 34/105 (32%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
RD R +R RER R RD ER R RD +R R R+RD R G
Sbjct: 188 RDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRERDRDRDR-EGPF 246
Query: 79 RDRDLLRVTGDVLDLDLLRVIGE----VLLRDRLLVTGGVLDLDL 119
R D + L V GE LLR G ++DL +
Sbjct: 247 RRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSM 291
Score = 27.7 bits (60), Expect = 6.9
Identities = 21/56 (37%), Positives = 26/56 (46%)
Query: 27 ASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDVRDRD 82
AS R R R R + RD +R R RD +R R R+RD R RDR+
Sbjct: 180 ASPPRSRSRDRSHERNRDRDRDRERDRDRDRDRDRERDRDRDRDRDRDRERDRDRE 235
>gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens]
Length = 1113
Score = 32.3 bits (72), Expect = 0.28
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 20 DLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGD-V 78
D E RR ER RER R R+ ER R R+ E+ R + RER+L R
Sbjct: 230 DEELRREREREREREREREADREREKEREREREKEREQEKEREREKERERELERQREQRA 289
Query: 79 RDRDLL 84
R+++LL
Sbjct: 290 REKELL 295
Score = 30.0 bits (66), Expect = 1.4
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 9 DRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLE--RRRIAGGVRDLERRRVTGEV 66
+ L R R+ ER R A ER +ER R R+ E R R R+LER+R
Sbjct: 231 EELRREREREREREREREADREREKEREREREKEREQEKEREREKERERELERQR-EQRA 289
Query: 67 RERDLL 72
RE++LL
Sbjct: 290 REKELL 295
Score = 28.9 bits (63), Expect = 3.1
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 22 ERRRIASGERLR---ERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
ER S ERL+ E R R+ ER R A R+ ER R + RE++ R
Sbjct: 217 ERMSGLSAERLQMDEELRREREREREREREREADREREKEREREREKEREQEKEREREKE 276
Query: 79 RDRDLLR 85
R+R+L R
Sbjct: 277 RERELER 283
>gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens]
Length = 1217
Score = 32.3 bits (72), Expect = 0.28
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 20 DLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGD-V 78
D E RR ER RER R R+ ER R R+ E+ R + RER+L R
Sbjct: 334 DEELRREREREREREREREADREREKEREREREKEREQEKEREREKERERELERQREQRA 393
Query: 79 RDRDLL 84
R+++LL
Sbjct: 394 REKELL 399
Score = 30.0 bits (66), Expect = 1.4
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 9 DRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLE--RRRIAGGVRDLERRRVTGEV 66
+ L R R+ ER R A ER +ER R R+ E R R R+LER+R
Sbjct: 335 EELRREREREREREREREADREREKEREREREKEREQEKEREREKERERELERQR-EQRA 393
Query: 67 RERDLL 72
RE++LL
Sbjct: 394 REKELL 399
Score = 28.9 bits (63), Expect = 3.1
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 22 ERRRIASGERLR---ERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
ER S ERL+ E R R+ ER R A R+ ER R + RE++ R
Sbjct: 321 ERMSGLSAERLQMDEELRREREREREREREREADREREKEREREREKEREQEKEREREKE 380
Query: 79 RDRDLLR 85
R+R+L R
Sbjct: 381 RERELER 387
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 32.0 bits (71), Expect = 0.37
Identities = 23/73 (31%), Positives = 27/73 (36%)
Query: 13 RAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLL 72
R+ RD R R R R R R + RD R R RD R R + R+
Sbjct: 405 RSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKARDHSRS 464
Query: 73 RVTGDVRDRDLLR 85
R RDR R
Sbjct: 465 RSPNKARDRSRSR 477
Score = 30.8 bits (68), Expect = 0.82
Identities = 22/67 (32%), Positives = 25/67 (37%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
RD R R + R R R R RD R R RD R R + R+R R
Sbjct: 399 RDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKA 458
Query: 79 RDRDLLR 85
RD R
Sbjct: 459 RDHSRSR 465
Score = 28.9 bits (63), Expect = 3.1
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 13 RAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLL 72
R+ RD R R R R R R + RD R R RD R R +ERD
Sbjct: 429 RSPNKARDCSRSRSPYKARDRSRSRSPNKARDHSRSRSPNKARDRSRSR--SPSKERDHS 486
Query: 73 RVTGDVRDRD 82
++ ++RD
Sbjct: 487 QLGSPSKERD 496
Score = 28.1 bits (61), Expect = 5.3
Identities = 21/66 (31%), Positives = 24/66 (36%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
RD R R + R R R RD R R RD R R + R+R R
Sbjct: 423 RDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKARDHSRSRSPNKARDRSRSRSPSKE 482
Query: 79 RDRDLL 84
RD L
Sbjct: 483 RDHSQL 488
Score = 27.7 bits (60), Expect = 6.9
Identities = 23/83 (27%), Positives = 34/83 (40%)
Query: 10 RLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRER 69
R R+ RD R R S ER R + R + RD + R R+ + R + R+R
Sbjct: 510 RQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDR 569
Query: 70 DLLRVTGDVRDRDLLRVTGDVLD 92
R R+R R + + D
Sbjct: 570 RRWRSPSKERERRQSRSSSEERD 592
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 32.0 bits (71), Expect = 0.37
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 19 RDLERRR---IASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERD---LL 72
RDL ++R + E LR +LR RD RR + R L + EV+ ++ L
Sbjct: 1143 RDLGKQRDSCLREAEELRTQLRLLEDARDGLRRELLEAQRKLRESQEGREVQRQEAGELR 1202
Query: 73 RVTGD-VRDRDLLRVTGDVLDLDLLRVIGEVLLRDRLLVTGGVLDLDLLRVTGGVLERER 131
R G+ ++R+ LR + + L + + E R L + + L L E
Sbjct: 1203 RSLGEGAKEREALRRSNEELRSAVKKAESE---RISLKLANEDKEQKL------ALLEEA 1253
Query: 132 RRVVGVLDLERRRVTGGVLDLDRLLLTGDALDRDLRRVTEVLDLDRLRLTGEVRDLDLR 190
R VG E + G+ +++R L ++LRR ++LD + RL E+ +L R
Sbjct: 1254 RTAVGK---EAGELRTGLQEVERSRLEARRELQELRRQMKMLDSENTRLGRELAELQGR 1309
>gi|62244004 modulator of estrogen induced transcription isoform b
[Homo sapiens]
Length = 1016
Score = 32.0 bits (71), Expect = 0.37
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 18/140 (12%)
Query: 8 KDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEV- 66
K+R + +D R+ I E+++E+ VR ER R A +L RRR E
Sbjct: 568 KERASLDKKRDKDYRRKEILPFEKMKEQRLREHLVR-FERLRRA---MELRRRREIAERE 623
Query: 67 -RERDLLRVTGDVRDRDLLRVTGDVLDLDLLRVIGEVLLRDRLLVTGGVLDLDLLRVTGG 125
RER+ +R+ + +R+ L+ + L+++ ++ E + R+R L+ + +R+
Sbjct: 624 RRERERIRIIREREERERLQRERERLEIERQKLERERMERER-------LERERIRI--- 673
Query: 126 VLERERRRVVGVLDLERRRV 145
E+ERR+ + ER +
Sbjct: 674 --EQERRKEAERIAREREEL 691
>gi|63176611 modulator of estrogen induced transcription isoform a
[Homo sapiens]
Length = 1034
Score = 32.0 bits (71), Expect = 0.37
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 18/140 (12%)
Query: 8 KDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEV- 66
K+R + +D R+ I E+++E+ VR ER R A +L RRR E
Sbjct: 586 KERASLDKKRDKDYRRKEILPFEKMKEQRLREHLVR-FERLRRA---MELRRRREIAERE 641
Query: 67 -RERDLLRVTGDVRDRDLLRVTGDVLDLDLLRVIGEVLLRDRLLVTGGVLDLDLLRVTGG 125
RER+ +R+ + +R+ L+ + L+++ ++ E + R+R L+ + +R+
Sbjct: 642 RRERERIRIIREREERERLQRERERLEIERQKLERERMERER-------LERERIRI--- 691
Query: 126 VLERERRRVVGVLDLERRRV 145
E+ERR+ + ER +
Sbjct: 692 --EQERRKEAERIAREREEL 709
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 31.6 bits (70), Expect = 0.48
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 19 RDLER-RRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGD 77
RD ER RR S ER +ER R S RD RR + + R R + ++RD R +
Sbjct: 235 RDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSR 294
Query: 78 VRDR 81
R+R
Sbjct: 295 SRER 298
>gi|239747891 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 31.2 bits (69), Expect = 0.63
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
R ER ER RER R R +R R RD ER+R T RER+ R G
Sbjct: 66 RQRERETERETERQRERQRQRERKRQTDRERDKD--RDRERKRETDRNRERN--RKGGRE 121
Query: 79 RDRDLLR 85
RD+ R
Sbjct: 122 RDKQTER 128
Score = 30.4 bits (67), Expect = 1.1
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
+D +R R +R RER R RD + R R+ +R+R R+R+ R T
Sbjct: 98 KDRDRERKRETDRNRERNRKGGRERDKQTERERDRERERQRQRERERQRQRERKRETDRE 157
Query: 79 RDR 81
R R
Sbjct: 158 RQR 160
Score = 30.0 bits (66), Expect = 1.4
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
RD R R +R +ER R RD +R+R R+ ER+R RER R T
Sbjct: 40 RDRHRERDRQTDREKERERQKE--RDRQRQRERETERETERQRERQRQRERK--RQTDRE 95
Query: 79 RDRD 82
RD+D
Sbjct: 96 RDKD 99
Score = 30.0 bits (66), Expect = 1.4
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 10/68 (14%)
Query: 20 DLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDVR 79
D E+ R ER R+R R R+ ER+R R ER+R T R++D R
Sbjct: 51 DREKERERQKERDRQRQRERETERETERQR--ERQRQRERKRQTDRERDKD--------R 100
Query: 80 DRDLLRVT 87
DR+ R T
Sbjct: 101 DRERKRET 108
Score = 29.6 bits (65), Expect = 1.8
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 19 RDLERRRIASGERL--RERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTG 76
R ER+R ER R+R R R+ ER R G RD + R RER R
Sbjct: 84 RQRERKRQTDRERDKDRDRERKRETDRNRERNRKGGRERDKQTERERDRERERQRQRERE 143
Query: 77 DVRDRDLLRVT 87
R R+ R T
Sbjct: 144 RQRQRERKRET 154
Score = 28.9 bits (63), Expect = 3.1
Identities = 20/67 (29%), Positives = 30/67 (44%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
R+ ER+R +R R+R +D +R R R+ ER R G R++ R
Sbjct: 74 RETERQRERQRQRERKRQTDRERDKDRDRERKRETDRNRERNRKGGRERDKQTERERDRE 133
Query: 79 RDRDLLR 85
R+R R
Sbjct: 134 RERQRQR 140
>gi|239750438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 510
Score = 30.4 bits (67), Expect = 1.1
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 17 GVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRER 69
G+ L+R ++ G + ER G L R+ G R ERRR G R+R
Sbjct: 437 GLHGLQRPQMRLGPQGGERDAGLGRPHQLIHDRLGQGARQRERRRAVGRQRQR 489
>gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens]
Length = 234
Score = 30.4 bits (67), Expect = 1.1
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 13 RAVRGVRDLERRRIA--SGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERD 70
R R R+LERR +A GER ER R E R A R+L+ R + R RD
Sbjct: 142 RGSRRERELERRELAVEQGERALERRR---RALQEEERAAAQARRELQAEREALQARLRD 198
Query: 71 LLRVTG 76
+ R G
Sbjct: 199 VSRREG 204
Score = 27.3 bits (59), Expect = 9.0
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 36 LRGNSGVRDLERRRIA--GGVRDLERRRVTGEVRER 69
+RG+ R+LERR +A G R LERRR + ER
Sbjct: 141 VRGSRRERELERRELAVEQGERALERRRRALQEEER 176
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 30.4 bits (67), Expect = 1.1
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 8 KDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVR 67
+ +L R R+ +R ERL++RLR +R + R ++ E +R+ E R
Sbjct: 504 EQQLRREQEERREQRLKRQEEEERLQQRLRSEQQLRREQEERREQLLKREEEKRLEQERR 563
Query: 68 ERDLLRVTGDVRDRDLLR 85
E+ L R + RD+ L R
Sbjct: 564 EQRLKREQEERRDQLLKR 581
>gi|188497714 transmembrane and coiled-coil domain family 3 [Homo
sapiens]
Length = 477
Score = 30.0 bits (66), Expect = 1.4
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 145 VTGGVLDLDRLLLTGDALDRDLRRVTEVLDLDRLRLTGEVRD 186
V G+LD ++ LT D+L + + +VTE + +++ G V +
Sbjct: 54 VPDGILDFHKVKLTADSLKQKILKVTEQIKIEQTSRDGNVAE 95
>gi|7661788 mediator complex subunit 4 [Homo sapiens]
Length = 270
Score = 29.6 bits (65), Expect = 1.8
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 27 ASGERLRERLRGNSGVR--DLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDVRDRDLL 84
+SGE+ +ERL G GV + R R+ + DL EV R+L+ + R++ LL
Sbjct: 5 SSGEKEKERLGGGLGVAGGNSTRERLLSALEDL-------EVLSRELIEMLAISRNQKLL 57
Query: 85 RVTGDVLDLDLL 96
+ + L+LL
Sbjct: 58 QAGEENQVLELL 69
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 29.3 bits (64), Expect = 2.4
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 8 KDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVR 67
K+R RG R+ +R++ ER ++R R N R ER R R ER++ + +
Sbjct: 145 KERKREKERGKRERKRKKRKKEEREKKRER-NRKERKKERERKERRERKKERKKERRKKK 203
Query: 68 ERDLLRVTGDVRDRDLLR 85
ER R T D + R
Sbjct: 204 ERKKDRKTDRQTDSQVFR 221
>gi|239747174 PREDICTED: hypothetical protein XP_002343931, partial
[Homo sapiens]
Length = 213
Score = 29.3 bits (64), Expect = 2.4
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
RD +R R + ER R+R R R+ ER+R RD +R +ER+ R T
Sbjct: 46 RDRQRDRERNRERDRDREREKQTDREGERQRERERDRDRQRETERERDKERETDRHTETD 105
Query: 79 RDR 81
R+R
Sbjct: 106 RER 108
Score = 28.5 bits (62), Expect = 4.1
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRD--LERRRVTGEVRERDLLRVTG 76
R+ E++ GER RER R R+ ER R D E R + +ER++ RV
Sbjct: 62 REREKQTDREGERQRERERDRDRQRETERERDKERETDRHTETDRERQKQKEREMERVRD 121
Query: 77 DVRDR 81
R++
Sbjct: 122 REREK 126
Score = 28.5 bits (62), Expect = 4.1
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERR----RIAGGVRDLERRRVTGEVRERDLLRV 74
RD +R+R ER +ER D ER+ R VRD ER + RER R
Sbjct: 80 RDRDRQRETERERDKERETDRHTETDRERQKQKEREMERVRDREREKQKEMGRERQTDRE 139
Query: 75 TGDVRDRDLLR 85
T R+R R
Sbjct: 140 TDRERERQAER 150
Score = 27.7 bits (60), Expect = 6.9
Identities = 23/71 (32%), Positives = 29/71 (40%)
Query: 5 DLVKDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTG 64
D +DR + R ER R ER RER R + +R R+ +R R
Sbjct: 28 DRERDRAKESKTEDRHSERDRQRDRERNRERDRDREREKQTDREGERQRERERDRDRQRE 87
Query: 65 EVRERDLLRVT 75
RERD R T
Sbjct: 88 TERERDKERET 98
Score = 27.3 bits (59), Expect = 9.0
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 30 ERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDVRDRDLLRVT 87
ER R+R R + RD +R R R+ ER+R RERD R R+RD R T
Sbjct: 45 ERDRQRDRERNRERDRDREREKQTDREGERQRE----RERDRDRQRETERERDKERET 98
>gi|213385278 TNF receptor-associated factor 3 interacting protein 1
isoform 2 [Homo sapiens]
Length = 625
Score = 28.9 bits (63), Expect = 3.1
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 18/109 (16%)
Query: 5 DLVKDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVR---DLERRRIAGGV---RDLE 58
+L +DR PR +D E+ + G R RE R + R D ER++ G RD E
Sbjct: 187 ELKEDRKPREKD--KDKEKAKENGGNRHREGERERAKARARPDNERQKDRGNRERDRDSE 244
Query: 59 RRRVTGE----------VRERDLLRVTGDVRDRDLLRVTGDVLDLDLLR 97
R++ T +R+RD R +DRD RV DL R
Sbjct: 245 RKKETERKSEGGKEKERLRDRDRERDRDKGKDRDRRRVKNGEHSWDLDR 293
Score = 27.3 bits (59), Expect = 9.0
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
R E R + G + +ERLR RD ER R G +D +RRRV DL R
Sbjct: 245 RKKETERKSEGGKEKERLRD----RDRERDRDKG--KDRDRRRVKNGEHSWDLDREKNRE 298
Query: 79 RDR 81
D+
Sbjct: 299 HDK 301
>gi|20070262 TNF receptor-associated factor 3 interacting protein 1
isoform 1 [Homo sapiens]
Length = 691
Score = 28.9 bits (63), Expect = 3.1
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 18/109 (16%)
Query: 5 DLVKDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVR---DLERRRIAGGV---RDLE 58
+L +DR PR +D E+ + G R RE R + R D ER++ G RD E
Sbjct: 187 ELKEDRKPREKD--KDKEKAKENGGNRHREGERERAKARARPDNERQKDRGNRERDRDSE 244
Query: 59 RRRVTGE----------VRERDLLRVTGDVRDRDLLRVTGDVLDLDLLR 97
R++ T +R+RD R +DRD RV DL R
Sbjct: 245 RKKETERKSEGGKEKERLRDRDRERDRDKGKDRDRRRVKNGEHSWDLDR 293
Score = 27.3 bits (59), Expect = 9.0
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 19 RDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRVTGEVRERDLLRVTGDV 78
R E R + G + +ERLR RD ER R G +D +RRRV DL R
Sbjct: 245 RKKETERKSEGGKEKERLRD----RDRERDRDKG--KDRDRRRVKNGEHSWDLDREKNRE 298
Query: 79 RDR 81
D+
Sbjct: 299 HDK 301
>gi|219521893 coiled-coil transcriptional coactivator isoform 2
[Homo sapiens]
Length = 606
Score = 28.9 bits (63), Expect = 3.1
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 26/150 (17%)
Query: 3 GGDLVKDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRV 62
GG + +P+A L+ + + ++ +L+ V +L R V++LER
Sbjct: 102 GGSDILLVVPKATVLQNQLDESQQERNDLMQLKLQLEGQVTELRSR-----VQELERALA 156
Query: 63 TGEVRERDLL-------RVTGDV-RDRDLL-RVTGD----VLDL-DLLRVIGEVLLRDRL 108
T +L+ R G++ +RD+L R GD +L+L D ++ I E +L +
Sbjct: 157 TARQEHTELMEQYKGISRSHGEITEERDILSRQQGDHVARILELEDDIQTISEKVLTKEV 216
Query: 109 LVTGGVLDLDLLRVTGGVLERERRRVVGVL 138
+LD LR T L RE+ +++G L
Sbjct: 217 -------ELDRLRDTVKALTREQEKLLGQL 239
>gi|14149742 coiled-coil transcriptional coactivator isoform 1 [Homo
sapiens]
Length = 691
Score = 28.9 bits (63), Expect = 3.1
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 26/150 (17%)
Query: 3 GGDLVKDRLPRAVRGVRDLERRRIASGERLRERLRGNSGVRDLERRRIAGGVRDLERRRV 62
GG + +P+A L+ + + ++ +L+ V +L R V++LER
Sbjct: 135 GGSDILLVVPKATVLQNQLDESQQERNDLMQLKLQLEGQVTELRSR-----VQELERALA 189
Query: 63 TGEVRERDLL-------RVTGDV-RDRDLL-RVTGD----VLDL-DLLRVIGEVLLRDRL 108
T +L+ R G++ +RD+L R GD +L+L D ++ I E +L +
Sbjct: 190 TARQEHTELMEQYKGISRSHGEITEERDILSRQQGDHVARILELEDDIQTISEKVLTKEV 249
Query: 109 LVTGGVLDLDLLRVTGGVLERERRRVVGVL 138
+LD LR T L RE+ +++G L
Sbjct: 250 -------ELDRLRDTVKALTREQEKLLGQL 272
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.151 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,743,097
Number of Sequences: 37866
Number of extensions: 295958
Number of successful extensions: 1681
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 1111
Number of HSP's gapped (non-prelim): 263
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.