Guide to the Human Genome
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Name: TMCC3 Sequence: fasta or formatted (477aa) NCBI GI: 188497714
Description:

transmembrane and coiled-coil domain family 3

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         36           1
 C cysteine            1.9          9           1
 D aspartate           5.9         28           2
 E glutamate           7.1         34           2
 F phenylalanine       3.4         16           2
 G glycine             5.0         24           2
 H histidine           3.6         17           2
 I isoleucine          6.3         30           2
 K lysine              8.0         38           2
 L leucine             9.4         45           2
 M methionine          1.7          8           2
 N asparagine          4.4         21           2
 P proline             2.5         12           2
 Q glutamine           6.1         29           2
 R arginine            6.3         30           2
 S serine              8.6         41           2
 T threonine           5.0         24           1
 V valine              5.0         24           1
 W tryptophan          0.2          1           1
 Y tyrosine            2.1         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane and coiled-coil domain family 3 [Homo... 
TMCC2                 0.490   transmembrane and coiled-coil domain family 2 
TMCC1                 0.438   transmembrane and coiled-coil domain family 1 isofo...
TMCC1                 0.438   transmembrane and coiled-coil domain family 1 isofo...
TMCC1                 0.285   transmembrane and coiled-coil domain family 1 isofor...
TEX28                 0.064   testis expressed 28 
FHAD1                 0.027   forkhead-associated (FHA) phosphopeptide binding do...
UACA                  0.024   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.024   uveal autoantigen with coiled-coil domains and ankyr...
GOLGB1                0.022   golgi autoantigen, golgin subfamily b, macrogolgin ...
NUMA1                 0.021   nuclear mitotic apparatus protein 1 
PCNT                  0.020   pericentrin 
YTHDC1                0.019   splicing factor YT521-B isoform 2 
YTHDC1                0.019   splicing factor YT521-B isoform 1 
CCDC88A               0.017   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.017   coiled-coil domain containing 88A isoform 1 
MYH13                 0.016   myosin, heavy polypeptide 13, skeletal muscle [Homo...
GOLGA4                0.016   golgi autoantigen, golgin subfamily a, 4 
CYTSA                 0.016   cytospin A 
CYTSA                 0.016   cytospin A 
MYH2                  0.016   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.016   myosin, heavy chain 2, skeletal muscle, adult [Homo...
C6orf204              0.016   chromosome 6 open reading frame 204 isoform a [Homo...
EIF3A                 0.015   eukaryotic translation initiation factor 3, subunit 1...
KIF5C                 0.015   kinesin family member 5C 
GCC2                  0.015   GRIP and coiled-coil domain-containing 2 
AKAP9                 0.015   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.015   A-kinase anchor protein 9 isoform 3 
MED4                  0.015   mediator complex subunit 4 
EPS15                 0.014   epidermal growth factor receptor pathway substrate 15...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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