Guide to the Human Genome
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Name: LOC100131688 Sequence: fasta or formatted (222aa) NCBI GI: 169210132
Description:

PREDICTED: similar to hCG2041551

Referenced in:

Olfactory Receptors

Other entries for this name:
alt prot [289aa] PREDICTED: similar to hCG2041551
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         14           1
 C cysteine            2.7          6           1
 D aspartate           2.7          6           1
 E glutamate           1.4          3           1
 F phenylalanine       7.2         16           3
 G glycine             5.9         13           1
 H histidine           5.0         11           1
 I isoleucine          5.0         11           1
 K lysine              5.0         11           1
 L leucine            13.5         30           2
 M methionine          2.7          6           1
 N asparagine          3.2          7           2
 P proline             5.0         11           1
 Q glutamine           3.2          7           1
 R arginine            2.7          6           1
 S serine             11.7         26           2
 T threonine           8.1         18           2
 V valine              6.3         14           2
 W tryptophan          1.4          3           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2041551 
LOC100131688          0.859   PREDICTED: similar to hCG2041551 
LOC100129315          0.345   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
LOC100129315          0.345   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
LOC100129315          0.345   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
VN1R5                 0.178   vomeronasal 1 receptor 5 
LOC100133928          0.157   PREDICTED: similar to vomeronasal 1 receptor, A5 [H...
VN1R2                 0.110   vomeronasal 1 receptor 2 
VN1R1                 0.108   vomeronasal 1 receptor 1 
VN1R4                 0.080   vomeronasal 1 receptor 4 
HTR7                  0.031   5-hydroxytryptamine receptor 7 isoform b 
HTR7                  0.031   5-hydroxytryptamine receptor 7 isoform d 
HTR7                  0.031   5-hydroxytryptamine receptor 7 isoform a 
TPCN1                 0.019   two pore segment channel 1 isoform 1 
TPCN1                 0.019   two pore segment channel 1 isoform 2 
TAAR5                 0.012   trace amine associated receptor 5 
LCMT1                 0.009   leucine carboxyl methyltransferase 1 isoform b [Homo...
TAAR9                 0.009   trace amine associated receptor 9 
KDM6A                 0.007   ubiquitously transcribed tetratricopeptide repeat, ...
PPYR1                 0.007   pancreatic polypeptide receptor 1 
TAS2R19               0.007   taste receptor, type 2, member 19 
LTB4R2                0.007   leukotriene B4 receptor 2 
CREBBP                0.007   CREB binding protein isoform b 
CREBBP                0.007   CREB binding protein isoform a 
ALG10B                0.007   asparagine-linked glycosylation 10 homolog B 
ZCCHC2                0.007   zinc finger, CCHC domain containing 2 
FLG                   0.007   filaggrin 
NFE2L3                0.007   nuclear factor erythroid 2-like 3 
ATP13A4               0.007   ATPase type 13A4 
TUBGCP6               0.007   tubulin, gamma complex associated protein 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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