Guide to the Human Genome
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Name: TPCN1 Sequence: fasta or formatted (816aa) NCBI GI: 29725622
Description:

two pore segment channel 1 isoform 2

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [888aa] two pore segment channel 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         54           2
 C cysteine            1.1          9           2
 D aspartate           2.9         24           3
 E glutamate           6.0         49           2
 F phenylalanine       7.4         60           2
 G glycine             4.4         36           2
 H histidine           2.1         17           1
 I isoleucine          4.9         40           2
 K lysine              3.8         31           2
 L leucine            13.8        113           6
 M methionine          3.4         28           2
 N asparagine          4.4         36           2
 P proline             3.8         31           2
 Q glutamine           3.6         29           2
 R arginine            5.8         47           2
 S serine              7.2         59           3
 T threonine           4.7         38           2
 V valine              7.8         64           3
 W tryptophan          1.5         12           1
 Y tyrosine            4.8         39           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   two pore segment channel 1 isoform 2 
TPCN1                 1.000   two pore segment channel 1 isoform 1 
TPCN2                 0.101   two pore segment channel 2 
CACNA1H               0.056   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1A               0.053   calcium channel, alpha 1A subunit isoform 3 
CACNA1G               0.052   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.052   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.052   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.052   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.052   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.052   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.052   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.052   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.052   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.052   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.052   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.052   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1A               0.051   calcium channel, alpha 1A subunit isoform 4 
CACNA1B               0.049   calcium channel, voltage-dependent, N type, alpha 1B ...
CACNA1E               0.049   calcium channel, voltage-dependent, R type, alpha 1E...
CACNA1I               0.048   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1I               0.048   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1S               0.047   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1H               0.046   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1G               0.044   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.044   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1C               0.034   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.034   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.034   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.034   calcium channel, voltage-dependent, L type, alpha 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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