Guide to the Human Genome
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Name: LOC100129315 Sequence: fasta or formatted (275aa) NCBI GI: 239756558
Description:

PREDICTED: similar to vomeronasal 1 receptor, C3

Referenced in:

Olfactory Receptors

Other entries for this name:
alt prot [275aa] PREDICTED: similar to vomeronasal 1 receptor, C3
alt prot [275aa] PREDICTED: similar to vomeronasal 1 receptor, C3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         15           1
 C cysteine            2.2          6           1
 D aspartate           2.5          7           1
 E glutamate           0.7          2           1
 F phenylalanine       9.1         25           3
 G glycine             1.5          4           1
 H histidine           4.7         13           1
 I isoleucine          7.3         20           2
 K lysine              4.0         11           1
 L leucine            14.5         40           3
 M methionine          2.9          8           1
 N asparagine          4.7         13           1
 P proline             4.0         11           1
 Q glutamine           3.6         10           1
 R arginine            4.0         11           2
 S serine             10.2         28           2
 T threonine           7.3         20           2
 V valine              6.5         18           2
 W tryptophan          2.2          6           1
 Y tyrosine            2.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to vomeronasal 1 receptor, C3 [H... 
LOC100129315          0.996   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
LOC100129315          0.996   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
LOC100131688          0.276   PREDICTED: similar to hCG2041551 
LOC100131688          0.276   PREDICTED: similar to hCG2041551 
VN1R5                 0.240   vomeronasal 1 receptor 5 
LOC100294489          0.191   PREDICTED: similar to hCG1817096 
LOC100133928          0.169   PREDICTED: similar to vomeronasal 1 receptor, A5 [H...
VN1R2                 0.158   vomeronasal 1 receptor 2 
VN1R1                 0.144   vomeronasal 1 receptor 1 
VN1R4                 0.141   vomeronasal 1 receptor 4 
LOC100129126          0.071   PREDICTED: hypothetical LOC100129126 
LOC100129126          0.071   PREDICTED: hypothetical LOC100129126 
LOC100129126          0.071   PREDICTED: hypothetical LOC100129126 
LOC100129126          0.071   PREDICTED: hypothetical LOC100129126 
FKSG83                0.054   FKSG83 
TAS2R38               0.009   taste receptor, type 2, member 38 
CCT8L2                0.009   T-complex protein 1 
TAS2R3                0.008   taste receptor T2R3 
CYSLTR1               0.008   cysteinyl leukotriene receptor 1 
PIK3C2B               0.006   phosphoinositide-3-kinase, class 2 beta polypeptide...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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