Guide to the Human Genome
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Name: LOC100133928 Sequence: fasta or formatted (165aa) NCBI GI: 169165489
Description:

PREDICTED: similar to vomeronasal 1 receptor, A5

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         13           2
 C cysteine            3.6          6           1
 D aspartate           4.2          7           2
 E glutamate           1.8          3           1
 F phenylalanine       4.8          8           1
 G glycine             3.0          5           1
 H histidine           5.5          9           1
 I isoleucine         10.3         17           2
 K lysine              4.8          8           1
 L leucine            12.7         21           3
 M methionine          2.4          4           1
 N asparagine          3.6          6           2
 P proline             4.2          7           1
 Q glutamine           0.6          1           1
 R arginine            4.2          7           1
 S serine             12.1         20           2
 T threonine           6.7         11           2
 V valine              4.2          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to vomeronasal 1 receptor, A5 [H... 
LOC100129315          0.294   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
LOC100129315          0.294   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
LOC100129315          0.294   PREDICTED: similar to vomeronasal 1 receptor, C3 [H...
VN1R5                 0.284   vomeronasal 1 receptor 5 
LOC100131688          0.219   PREDICTED: similar to hCG2041551 
LOC100131688          0.219   PREDICTED: similar to hCG2041551 
VN1R2                 0.111   vomeronasal 1 receptor 2 
VN1R4                 0.095   vomeronasal 1 receptor 4 
VN1R1                 0.088   vomeronasal 1 receptor 1 
GPR97                 0.010   G protein-coupled receptor 97 
TAS2R7                0.007   taste receptor, type 2, member 7 
OXGR1                 0.007   oxoglutarate (alpha-ketoglutarate) receptor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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