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Search of human proteins with 169209261
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169209261 PREDICTED: similar to hCG1731366 [Homo sapiens]
(456 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169209261 PREDICTED: similar to hCG1731366 [Homo sapiens] 945 0.0
gi|239745242 PREDICTED: similar to COMM domain containing 4 [Hom... 586 e-167
gi|239756356 PREDICTED: similar to hCG1731366 [Homo sapiens] 584 e-167
gi|169208214 PREDICTED: similar to COMM domain containing 4 [Hom... 267 2e-71
gi|169208948 PREDICTED: similar to COMM domain containing 4 [Hom... 254 9e-68
gi|21361661 COMM domain containing 4 [Homo sapiens] 241 1e-63
gi|160358850 zona pellucida glycoprotein 3 isoform 1 precursor [... 39 0.013
gi|38327649 zona pellucida glycoprotein 3 isoform 2 [Homo sapiens] 39 0.013
gi|169169054 PREDICTED: hypothetical protein [Homo sapiens] 35 0.14
gi|169168706 PREDICTED: hypothetical protein [Homo sapiens] 35 0.14
gi|169169649 PREDICTED: hypothetical protein [Homo sapiens] 35 0.14
gi|145309320 forkhead box Q1 [Homo sapiens] 32 1.6
gi|239752392 PREDICTED: hypothetical protein XP_002348220 [Homo ... 32 1.6
gi|239746909 PREDICTED: hypothetical protein XP_002343871 [Homo ... 32 1.6
gi|7706663 COMM domain containing 10 [Homo sapiens] 31 2.0
gi|169166639 PREDICTED: hypothetical protein [Homo sapiens] 31 2.7
gi|113416043 PREDICTED: hypothetical protein [Homo sapiens] 31 2.7
gi|113415531 PREDICTED: hypothetical protein [Homo sapiens] 31 2.7
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 30 3.5
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 30 3.5
gi|38327034 ubiquitination factor E4B isoform 2 [Homo sapiens] 30 4.5
gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens] 30 4.5
gi|56788364 tubulin, gamma complex associated protein 6 [Homo sa... 30 4.5
gi|239757091 PREDICTED: hypothetical protein [Homo sapiens] 30 5.9
gi|239751597 PREDICTED: hypothetical protein XP_002347925 [Homo ... 30 5.9
gi|239746112 PREDICTED: hypothetical protein XP_002344192 [Homo ... 30 5.9
gi|124028521 hematopoietic transcription factor PU.1 isoform 1 [... 30 5.9
gi|124028517 hematopoietic transcription factor PU.1 isoform 2 [... 30 5.9
gi|57863301 CLIP-associating protein 2 [Homo sapiens] 30 5.9
gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens] 30 5.9
>gi|169209261 PREDICTED: similar to hCG1731366 [Homo sapiens]
Length = 456
Score = 945 bits (2443), Expect = 0.0
Identities = 456/456 (100%), Positives = 456/456 (100%)
Query: 1 METELVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLFRGPMGSHTHAGPACWAHL 60
METELVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLFRGPMGSHTHAGPACWAHL
Sbjct: 1 METELVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLFRGPMGSHTHAGPACWAHL 60
Query: 61 HPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAP 120
HPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAP
Sbjct: 61 HPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAP 120
Query: 121 GTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDWVLAEISTLAKMS 180
GTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDWVLAEISTLAKMS
Sbjct: 121 GTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDWVLAEISTLAKMS 180
Query: 181 SVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDG 240
SVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDG
Sbjct: 181 SVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDG 240
Query: 241 ESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRTWSLAARVAEGTAETVDPS 300
ESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRTWSLAARVAEGTAETVDPS
Sbjct: 241 ESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRTWSLAARVAEGTAETVDPS 300
Query: 301 AAPKTSGVQALACTVPHDGLGWRHPEEGGTHSGGAWSTKAPDCWGTHTHGPLLSDCWPFP 360
AAPKTSGVQALACTVPHDGLGWRHPEEGGTHSGGAWSTKAPDCWGTHTHGPLLSDCWPFP
Sbjct: 301 AAPKTSGVQALACTVPHDGLGWRHPEEGGTHSGGAWSTKAPDCWGTHTHGPLLSDCWPFP 360
Query: 361 SLDTRALGRGVTIPGLSSQAERLLGTRLLLLGLSSAAGSTLEHLEPKKLPLTFMIPGTHS 420
SLDTRALGRGVTIPGLSSQAERLLGTRLLLLGLSSAAGSTLEHLEPKKLPLTFMIPGTHS
Sbjct: 361 SLDTRALGRGVTIPGLSSQAERLLGTRLLLLGLSSAAGSTLEHLEPKKLPLTFMIPGTHS 420
Query: 421 LIMMKADQNPLRCLKEQGSASTSHSLSDGEDVIPAV 456
LIMMKADQNPLRCLKEQGSASTSHSLSDGEDVIPAV
Sbjct: 421 LIMMKADQNPLRCLKEQGSASTSHSLSDGEDVIPAV 456
>gi|239745242 PREDICTED: similar to COMM domain containing 4 [Homo
sapiens]
Length = 344
Score = 586 bits (1511), Expect = e-167
Identities = 284/288 (98%), Positives = 286/288 (99%), Gaps = 1/288 (0%)
Query: 1 METELVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLFRGPMGSHTHAGPACWAHL 60
METELVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLFRGPMGSHTHAGPACWAHL
Sbjct: 1 METELVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLFRGPMGSHTHAGPACWAHL 60
Query: 61 HPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAP 120
HPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAP
Sbjct: 61 HPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAP 120
Query: 121 GTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDWVLAEISTLAKMS 180
GTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDWVLAEISTLAKMS
Sbjct: 121 GTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDWVLAEISTLAKMS 180
Query: 181 SVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDG 240
SVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDG
Sbjct: 181 SVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDG 240
Query: 241 ESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRTWSLAAR 288
ESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLR+ +LA R
Sbjct: 241 ESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRS-NLAQR 287
>gi|239756356 PREDICTED: similar to hCG1731366 [Homo sapiens]
Length = 344
Score = 584 bits (1506), Expect = e-167
Identities = 283/288 (98%), Positives = 285/288 (98%), Gaps = 1/288 (0%)
Query: 1 METELVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLFRGPMGSHTHAGPACWAHL 60
METELVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLFRGPMGSHTHAGPACWAHL
Sbjct: 1 METELVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLFRGPMGSHTHAGPACWAHL 60
Query: 61 HPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAP 120
HPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAP
Sbjct: 61 HPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAP 120
Query: 121 GTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDWVLAEISTLAKMS 180
GTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDWVLAEISTLAKMS
Sbjct: 121 GTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDWVLAEISTLAKMS 180
Query: 181 SVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDG 240
SVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDG
Sbjct: 181 SVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAKHSVDG 240
Query: 241 ESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRTWSLAAR 288
ESLASELQQLGLPKEHAASLC CYEEKQSPLQKHLRVCSLR+ +LA R
Sbjct: 241 ESLASELQQLGLPKEHAASLCHCYEEKQSPLQKHLRVCSLRS-NLAQR 287
>gi|169208214 PREDICTED: similar to COMM domain containing 4 [Homo
sapiens]
Length = 422
Score = 267 bits (682), Expect = 2e-71
Identities = 176/329 (53%), Positives = 198/329 (60%), Gaps = 37/329 (11%)
Query: 109 GRRRRRRQHFAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFCGDLDCPDW 168
GR+ R++ T + RA + ++ PS + V RF FCGDLDCPD
Sbjct: 3 GRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPS---LSRVGRRFRFCGDLDCPDR 59
Query: 169 VLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSF 228
VLAEISTLAKMSSVKL+LLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSF
Sbjct: 60 VLAEISTLAKMSSVKLQLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSF 119
Query: 229 MLSGTAKHSVDGESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRTWSLAAR 288
+LSG AKHSVDG+SLASELQQLGLPKEHAAS C CYEEKQSPLQKHLRVCSLR
Sbjct: 120 ILSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSLRR------ 173
Query: 289 VAEGTAETVDPSAAPKTSGVQALACTVPHDGLGWRHPEEGGTHSGGAWSTKAPDCWGTHT 348
+ ++P G++ + G W+ G AWS + H
Sbjct: 174 ---------EYGSSP---GLELRDLRI--RGHIWQ--------GGPAWSAHGQGRY--HV 209
Query: 349 HGPLLSDCWPFPSLDTRALGRGVTIPGLSSQAERLLGTRLLLLGLSSAAGSTLEHLEPKK 408
P P L L + + +LL L S A S LEHLEPKK
Sbjct: 210 GSPRPDTTAPVSPLHFHPAHHLHYALSLMNPSCQLLSAWL----GSHADRSPLEHLEPKK 265
Query: 409 LPLTFMIPGTHSLIMMKADQNPLRCLKEQ 437
L LTF IPGT LIMMK D NPLR LKEQ
Sbjct: 266 LSLTFAIPGTRPLIMMKVDPNPLRGLKEQ 294
>gi|169208948 PREDICTED: similar to COMM domain containing 4 [Homo
sapiens]
Length = 437
Score = 254 bits (650), Expect = 9e-68
Identities = 173/337 (51%), Positives = 196/337 (58%), Gaps = 38/337 (11%)
Query: 101 WPVRGKDSGRRRRRRQHFAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDSVDPRFWFC 160
W GR+ R++ T + RA + ++ PS + + RF FC
Sbjct: 11 WAAGAGMRGRQWLRKRVEVVCTGRSANTVCAGVRAAGLVEKSPPPS---LSRMGRRFRFC 67
Query: 161 GDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVK 220
GDLDCPD VLAEISTLAKMSSVKL+LLCSQVLKELLGQGID K KLTADAKFESGDVK
Sbjct: 68 GDLDCPDRVLAEISTLAKMSSVKLQLLCSQVLKELLGQGIDVKD-QKLTADAKFESGDVK 126
Query: 221 ATVAVLSFMLSGTAKHSVDGESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSL 280
ATVAVLSF+LSG AKHSVDG+SLASELQQLGLPKEHAAS C CYEEKQSPLQKHLRVCSL
Sbjct: 127 ATVAVLSFILSGAAKHSVDGKSLASELQQLGLPKEHAASPCCCYEEKQSPLQKHLRVCSL 186
Query: 281 RTWSLAARVAEGTAETVDPSAAPKTSGVQALACTVPHDGLGWRHPEEGGTHSGGAWSTKA 340
R + ++P G++ + G W+ G AWS
Sbjct: 187 RR---------------EYGSSP---GLELRDLRI--RGHIWQ--------GGPAWSAHG 218
Query: 341 PDCWGTHTHGPLLSDCWPFPSLDTRALGRGVTIPGLSSQAERLLGTRLLLLGLSSAAGST 400
+ H P P L L + + +LL L S A S
Sbjct: 219 QGRY--HVGSPRPDTTAPVSPLHFHPAHHLHYALSLMNPSCQLLSAWL----GSHADRSP 272
Query: 401 LEHLEPKKLPLTFMIPGTHSLIMMKADQNPLRCLKEQ 437
LEHLEPKKL LTF IPGT SLIMMK D NPLR LKEQ
Sbjct: 273 LEHLEPKKLSLTFAIPGTRSLIMMKVDPNPLRGLKEQ 309
>gi|21361661 COMM domain containing 4 [Homo sapiens]
Length = 199
Score = 241 bits (614), Expect = 1e-63
Identities = 122/131 (93%), Positives = 125/131 (95%)
Query: 156 RFWFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFE 215
RF FCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDY+KILKLTADAKFE
Sbjct: 2 RFRFCGDLDCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFE 61
Query: 216 SGDVKATVAVLSFMLSGTAKHSVDGESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHL 275
SGDVKATVAVLSF+LS AKHSVDGESL+SELQQLGLPKEHAASLCRCYEEKQSPLQKHL
Sbjct: 62 SGDVKATVAVLSFILSSAAKHSVDGESLSSELQQLGLPKEHAASLCRCYEEKQSPLQKHL 121
Query: 276 RVCSLRTWSLA 286
RVCSLR LA
Sbjct: 122 RVCSLRMNRLA 132
>gi|160358850 zona pellucida glycoprotein 3 isoform 1 precursor
[Homo sapiens]
Length = 424
Score = 38.5 bits (88), Expect = 0.013
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 5 LVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLF 42
L+ E+WNA++ P F L D QA+ +T H PLRLF
Sbjct: 176 LMEENWNAEKRSPTFHLGDAAHLQAEIHTGSHVPLRLF 213
>gi|38327649 zona pellucida glycoprotein 3 isoform 2 [Homo sapiens]
Length = 373
Score = 38.5 bits (88), Expect = 0.013
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 5 LVAEDWNAKQVPPAFWLRDILCFQAQTYTCCHKPLRLF 42
L+ E+WNA++ P F L D QA+ +T H PLRLF
Sbjct: 125 LMEENWNAEKRSPTFHLGDAAHLQAEIHTGSHVPLRLF 162
>gi|169169054 PREDICTED: hypothetical protein [Homo sapiens]
Length = 399
Score = 35.0 bits (79), Expect = 0.14
Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 24/155 (15%)
Query: 2 ETELVAEDWNAKQVPPAFWLRDILCFQAQTYTCC----HKPLRLFRGPMGSHTHAGPACW 57
+ +L A Q P A R L F AQ H+P +L R +G H H G
Sbjct: 240 QAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEG---- 295
Query: 58 AHLHPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQH 117
HP + P++R + H+ + PL ++G+ SG R R+
Sbjct: 296 ---HPQGQ-------RGPRRRHSG------RRAHLDGAARPPLPEIKGRASGPRNPPRRL 339
Query: 118 FAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDS 152
A + + + G L A PS+V+ DS
Sbjct: 340 KASPSQTRFKGPSGGEECRRGLFSATPPSRVLRDS 374
>gi|169168706 PREDICTED: hypothetical protein [Homo sapiens]
Length = 399
Score = 35.0 bits (79), Expect = 0.14
Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 24/155 (15%)
Query: 2 ETELVAEDWNAKQVPPAFWLRDILCFQAQTYTCC----HKPLRLFRGPMGSHTHAGPACW 57
+ +L A Q P A R L F AQ H+P +L R +G H H G
Sbjct: 240 QAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEG---- 295
Query: 58 AHLHPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQH 117
HP + P++R + H+ + PL ++G+ SG R R+
Sbjct: 296 ---HPQGQ-------RGPRRRHSG------RRAHLDGAARPPLPEIKGRASGPRNPPRRL 339
Query: 118 FAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDS 152
A + + + G L A PS+V+ DS
Sbjct: 340 KASPSQTRFKGPSGGEECRRGLFSATPPSRVLRDS 374
>gi|169169649 PREDICTED: hypothetical protein [Homo sapiens]
Length = 399
Score = 35.0 bits (79), Expect = 0.14
Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 24/155 (15%)
Query: 2 ETELVAEDWNAKQVPPAFWLRDILCFQAQTYTCC----HKPLRLFRGPMGSHTHAGPACW 57
+ +L A Q P A R L F AQ H+P +L R +G H H G
Sbjct: 240 QAQLAGRGRGAAQRPLAARGRRFLDFPAQPQVLAPPLAHQPPQLHRDHIGMHVHEG---- 295
Query: 58 AHLHPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQH 117
HP + P++R + H+ + PL ++G+ SG R R+
Sbjct: 296 ---HPQGQ-------RGPRRRHSG------RRAHLDGAARPPLPEIKGRASGPRNPPRRL 339
Query: 118 FAPGTSSGLRSAPGLTRAGPALPEAVSPSQVIVDS 152
A + + + G L A PS+V+ DS
Sbjct: 340 KASPSQTRFKGPSGGEECRRGLFSATPPSRVLRDS 374
>gi|145309320 forkhead box Q1 [Homo sapiens]
Length = 403
Score = 31.6 bits (70), Expect = 1.6
Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 110 RRRRRRQHFAPGTSSGLR--SAPGLTRAGPALPEA 142
RRR+R H AP + GLR APGL A P P A
Sbjct: 211 RRRKRLSHRAPVPAPGLRPEEAPGLPAAPPPAPAA 245
>gi|239752392 PREDICTED: hypothetical protein XP_002348220 [Homo
sapiens]
Length = 189
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 93 QKGSACPLWPVRG--KDSGRRRRRRQHFAPG--TSSGLRSAPGLTR 134
QKG+ACPL RG + G+R+ R APG +GL ++P TR
Sbjct: 61 QKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTR 106
>gi|239746909 PREDICTED: hypothetical protein XP_002343871 [Homo
sapiens]
Length = 189
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 93 QKGSACPLWPVRG--KDSGRRRRRRQHFAPG--TSSGLRSAPGLTR 134
QKG+ACPL RG + G+R+ R APG +GL ++P TR
Sbjct: 61 QKGTACPLALGRGGARGGGQRKSRSGARAPGQPAEAGLSASPEKTR 106
>gi|7706663 COMM domain containing 10 [Homo sapiens]
Length = 202
Score = 31.2 bits (69), Expect = 2.0
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 207 KLTADAKFESGDVKATVAVLSFMLSGTAKHSVDGESLASELQQLGLPKEHAASLCRCY-- 264
KL A E D+ + +SF+L H+V +L +L+ + L ++ A + +
Sbjct: 56 KLQAAFSLEKQDLHLVLETISFILEQAVYHNVKPAALQQQLENIHLRQDKAEAFVNTWSS 115
Query: 265 ---EEKQSPLQKHLRVCSLRT--WSLAARVAEGT-AETVDPSA 301
E + Q+ L C L T W L ++A A+ P A
Sbjct: 116 MGQETVEKFRQRILAPCKLETVGWQLNLQMAHSAQAKLKSPQA 158
>gi|169166639 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 30.8 bits (68), Expect = 2.7
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 63 GDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAPGT 122
G SS +SP + RPG G + ++G WP G+ R RR H A
Sbjct: 89 GASSFLSP-----RFRPGWGEALLHHSGFPERG-----WPA-GETEARDPDRRLHCATRV 137
Query: 123 SSGLRSAPGLTR-AGPA 138
G R AP TR GPA
Sbjct: 138 EIGARGAPSATREPGPA 154
>gi|113416043 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 30.8 bits (68), Expect = 2.7
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 63 GDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAPGT 122
G SS +SP + RPG G + ++G WP G+ R RR H A
Sbjct: 89 GASSFLSP-----RFRPGWGEALLHHSGFPERG-----WPA-GETEARDPDRRLHCATRV 137
Query: 123 SSGLRSAPGLTR-AGPA 138
G R AP TR GPA
Sbjct: 138 EIGARGAPSATREPGPA 154
>gi|113415531 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 30.8 bits (68), Expect = 2.7
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 63 GDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAPGT 122
G SS +SP + RPG G + ++G WP G+ R RR H A
Sbjct: 89 GASSFLSP-----RFRPGWGEALLHHSGFPERG-----WPA-GETEARDPDRRLHCATRV 137
Query: 123 SSGLRSAPGLTR-AGPA 138
G R AP TR GPA
Sbjct: 138 EIGARGAPSATREPGPA 154
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 30.4 bits (67), Expect = 3.5
Identities = 37/140 (26%), Positives = 51/140 (36%), Gaps = 35/140 (25%)
Query: 259 SLCRCYEEKQSPLQKHLRV----CSLRTWSLAARVAEGTAETVDPSAAPKTSGV-QALAC 313
SLC + +Q HL + W AR + G V P+ P+ V +AL C
Sbjct: 404 SLCSGPSSESDCVQSHLSLPLCFAESHMWETEARQSWGLLGAV-PALVPEALAVTRALGC 462
Query: 314 TVPHDGLGWRHPEEGGTH-----------SGGAWST---KAPDCWGTHTHGPLLSDCWPF 359
+ L W P + H + AW T P C G GP+L+ P
Sbjct: 463 PI----LAW--PPQPPAHLVAGSSCSESWAAWAWGTLILHLPSCHGNGVPGPVLAPRCP- 515
Query: 360 PSLDTRALGRGVTIPGLSSQ 379
G GV +P L+ Q
Sbjct: 516 --------GNGVLLPVLAPQ 527
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 30.4 bits (67), Expect = 3.5
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 75 PKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAPGTSSGLR-SAPGLT 133
P++RP G P + + G PL P G + RR R QH + T+S PG
Sbjct: 274 PEERPSSGQQDVAPDRGPEPGPPAPLPPPGG--ARARRARLQHSSALTASVEEGGVPGED 331
Query: 134 RAG-PALPEAVSPSQVIVDSVDP 155
+ PA PE P V+P
Sbjct: 332 PSSRPATPELAEPESAPTLRVEP 354
>gi|38327034 ubiquitination factor E4B isoform 2 [Homo sapiens]
Length = 1173
Score = 30.0 bits (66), Expect = 4.5
Identities = 17/80 (21%), Positives = 35/80 (43%)
Query: 176 LAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAK 235
L +++ + L+L C++ K + Y K L +K +K+T+A+ F L
Sbjct: 1023 LDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKV 1082
Query: 236 HSVDGESLASELQQLGLPKE 255
+ ++ +E+ P E
Sbjct: 1083 EEIVAKNARAEIDYSDAPDE 1102
>gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]
Length = 1302
Score = 30.0 bits (66), Expect = 4.5
Identities = 17/80 (21%), Positives = 35/80 (43%)
Query: 176 LAKMSSVKLRLLCSQVLKELLGQGIDYKKILKLTADAKFESGDVKATVAVLSFMLSGTAK 235
L +++ + L+L C++ K + Y K L +K +K+T+A+ F L
Sbjct: 1152 LDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAEKV 1211
Query: 236 HSVDGESLASELQQLGLPKE 255
+ ++ +E+ P E
Sbjct: 1212 EEIVAKNARAEIDYSDAPDE 1231
>gi|56788364 tubulin, gamma complex associated protein 6 [Homo
sapiens]
Length = 1819
Score = 30.0 bits (66), Expect = 4.5
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 13/97 (13%)
Query: 56 CWAHLHPGDSSLI--SPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRR 113
C H H D+S+ P + RP + +P HM G+ P ++
Sbjct: 1239 CNTHGHVSDASISLGEPVSDVVSTRPRWNTHVPIPPPHMVLGALSP-------EAEPNTP 1291
Query: 114 RRQHFAPGTSS----GLRSAPGLTRAGPALPEAVSPS 146
R Q PG +S L + + GP LP V PS
Sbjct: 1292 RPQQSPPGHTSQSALSLGAQSTVLDCGPRLPVEVGPS 1328
>gi|239757091 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 29.6 bits (65), Expect = 5.9
Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 54 PACWAHLHPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRR 113
PA W+ P D A P + G + K M+ S P P + +
Sbjct: 12 PASWSAAGPPDG------AGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKST 65
Query: 114 RRQHFAPGTSSGLRSAPGLTRAGPA 138
R H GLR P + GPA
Sbjct: 66 SRVHCRAAEGGGLRPVPAVPLPGPA 90
>gi|239751597 PREDICTED: hypothetical protein XP_002347925 [Homo
sapiens]
Length = 194
Score = 29.6 bits (65), Expect = 5.9
Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 54 PACWAHLHPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRR 113
PA W+ P D A P + G + K M+ S P P + +
Sbjct: 12 PASWSAAGPPDG------AGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKST 65
Query: 114 RRQHFAPGTSSGLRSAPGLTRAGPA 138
R H GLR P + GPA
Sbjct: 66 SRVHCRAAEGGGLRPVPAVPLPGPA 90
>gi|239746112 PREDICTED: hypothetical protein XP_002344192 [Homo
sapiens]
Length = 194
Score = 29.6 bits (65), Expect = 5.9
Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 54 PACWAHLHPGDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRR 113
PA W+ P D A P + G + K M+ S P P + +
Sbjct: 12 PASWSAAGPPDG------AGRPAEHEATGGASSLHIKCMEAASLLPRPPGKAPPGAAKST 65
Query: 114 RRQHFAPGTSSGLRSAPGLTRAGPA 138
R H GLR P + GPA
Sbjct: 66 SRVHCRAAEGGGLRPVPAVPLPGPA 90
>gi|124028521 hematopoietic transcription factor PU.1 isoform 1
[Homo sapiens]
Length = 271
Score = 29.6 bits (65), Expect = 5.9
Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 7/147 (4%)
Query: 87 VPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAPGTSSGLRSAPGLTRAGPALPEAVSPS 146
+P+ +Q S P P ++ G R+ + G + GL PGL + +
Sbjct: 115 LPRMCLQYPSLSPAQPSSDEEEGERQSPPLEVSDGEADGLEPGPGLLPGETGSKKKIRLY 174
Query: 147 QVIVDSVDPRFWFCGDL-DCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYKKI 205
Q ++D + GD+ D WV + T S K L +++ + + Y+K+
Sbjct: 175 QFLLDLLR-----SGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQKM 229
Query: 206 LKLTADAKFESGDVKATVAVLSFMLSG 232
+ + ++G+VK L++ SG
Sbjct: 230 ARALRNYG-KTGEVKKVKKKLTYQFSG 255
>gi|124028517 hematopoietic transcription factor PU.1 isoform 2
[Homo sapiens]
Length = 270
Score = 29.6 bits (65), Expect = 5.9
Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 7/147 (4%)
Query: 87 VPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAPGTSSGLRSAPGLTRAGPALPEAVSPS 146
+P+ +Q S P P ++ G R+ + G + GL PGL + +
Sbjct: 114 LPRMCLQYPSLSPAQPSSDEEEGERQSPPLEVSDGEADGLEPGPGLLPGETGSKKKIRLY 173
Query: 147 QVIVDSVDPRFWFCGDL-DCPDWVLAEISTLAKMSSVKLRLLCSQVLKELLGQGIDYKKI 205
Q ++D + GD+ D WV + T S K L +++ + + Y+K+
Sbjct: 174 QFLLDLLR-----SGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQKM 228
Query: 206 LKLTADAKFESGDVKATVAVLSFMLSG 232
+ + ++G+VK L++ SG
Sbjct: 229 ARALRNYG-KTGEVKKVKKKLTYQFSG 254
>gi|57863301 CLIP-associating protein 2 [Homo sapiens]
Length = 1506
Score = 29.6 bits (65), Expect = 5.9
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 240 GESLASELQQLGLPKEHAASLCRCYEEKQSPLQKHLRVCSLRTWSLAARVAEGTAETVDP 299
GE + +L + G+P + ++E QS L VC +++ V +G +
Sbjct: 199 GEKVRMDLYKRGIPPARLEMIFAKFDEVQSSGGMILSVCKDKSFDDEESV-DGNRPSSAA 257
Query: 300 SA----APKTSGVQALACTVPHDGLGWRHPEEGG-THSGGAWSTKAPD 342
SA APKTSG A + P G P+ GG + GGA + D
Sbjct: 258 SAFKVPAPKTSGNPANSARKPGSAGG---PKVGGASKEGGAGAVDEDD 302
>gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 29.6 bits (65), Expect = 5.9
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 16/69 (23%)
Query: 88 PKKHMQKGSACPLWPVRGKDSG---------RRRRRRQHFAPGTSSGLRSAPGLTRAGPA 138
PK H + GS+ DSG RRRRR + ++P +S+ ++PG +++ A
Sbjct: 77 PKWHSRDGSS-------QSDSGEEQSRGQWARRRRRARSWSPSSSASSSASPGRSQSPRA 129
Query: 139 LPEAVSPSQ 147
A+S Q
Sbjct: 130 AAAALSQQQ 138
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,146,472
Number of Sequences: 37866
Number of extensions: 1005583
Number of successful extensions: 2791
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2765
Number of HSP's gapped (non-prelim): 48
length of query: 456
length of database: 18,247,518
effective HSP length: 106
effective length of query: 350
effective length of database: 14,233,722
effective search space: 4981802700
effective search space used: 4981802700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.