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Search of human proteins with 169208709
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169208709 PREDICTED: hypothetical protein [Homo sapiens]
(150 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169208709 PREDICTED: hypothetical protein [Homo sapiens] 301 2e-82
gi|169208196 PREDICTED: hypothetical protein [Homo sapiens] 301 2e-82
gi|169208967 PREDICTED: hypothetical protein [Homo sapiens] 272 9e-74
gi|7662162 ALEX2 protein [Homo sapiens] 39 0.001
gi|29540562 ALEX2 protein [Homo sapiens] 39 0.001
gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo sapi... 39 0.002
gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo sapi... 39 0.002
gi|5174751 Yes-associated protein 1, 65kDa isoform 2 [Homo sapiens] 39 0.002
gi|194306653 Yes-associated protein 1, 65kDa isoform 1 [Homo sap... 39 0.002
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 37 0.005
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 37 0.005
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 37 0.005
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa... 37 0.005
gi|194248057 growth associated protein 43 isoform 1 [Homo sapiens] 37 0.006
gi|4503911 growth associated protein 43 isoform 2 [Homo sapiens] 37 0.006
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 37 0.008
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 37 0.008
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 37 0.008
gi|38788260 bromodomain PHD finger transcription factor isoform ... 36 0.011
gi|38788274 bromodomain PHD finger transcription factor isoform ... 36 0.011
gi|4507831 Unc-51-like kinase 1 [Homo sapiens] 36 0.014
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 35 0.024
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 35 0.024
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 34 0.041
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 34 0.053
gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo ... 34 0.053
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 34 0.053
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 34 0.053
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 34 0.053
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 34 0.053
>gi|169208709 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 301 bits (770), Expect = 2e-82
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MQHRKSCFVKELTRHRQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALA 60
MQHRKSCFVKELTRHRQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALA
Sbjct: 1 MQHRKSCFVKELTRHRQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALA 60
Query: 61 PSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPG 120
PSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPG
Sbjct: 61 PSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPG 120
Query: 121 GSDNIPTSSGRGSRRWRRRGRGGGGGVASS 150
GSDNIPTSSGRGSRRWRRRGRGGGGGVASS
Sbjct: 121 GSDNIPTSSGRGSRRWRRRGRGGGGGVASS 150
>gi|169208196 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 301 bits (770), Expect = 2e-82
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MQHRKSCFVKELTRHRQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALA 60
MQHRKSCFVKELTRHRQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALA
Sbjct: 1 MQHRKSCFVKELTRHRQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALA 60
Query: 61 PSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPG 120
PSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPG
Sbjct: 61 PSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPG 120
Query: 121 GSDNIPTSSGRGSRRWRRRGRGGGGGVASS 150
GSDNIPTSSGRGSRRWRRRGRGGGGGVASS
Sbjct: 121 GSDNIPTSSGRGSRRWRRRGRGGGGGVASS 150
>gi|169208967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 200
Score = 272 bits (695), Expect = 9e-74
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 15 HRQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGL 74
HRQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGL
Sbjct: 65 HRQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGL 124
Query: 75 TARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGSR 134
TARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGSR
Sbjct: 125 TARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGSR 184
Query: 135 RWRRRGRGGGGGVASS 150
RWRRRGRGGGGGVASS
Sbjct: 185 RWRRRGRGGGGGVASS 200
>gi|7662162 ALEX2 protein [Homo sapiens]
Length = 632
Score = 39.3 bits (90), Expect = 0.001
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 29/128 (22%)
Query: 46 AEFSQAALTPEEALAPSSSSPLQAGD-VGLTARSQKAGPSGARSPRSAVETP-------- 96
AE S+AA+ P + +++P + + G+ A ++ A G SP A E P
Sbjct: 170 AETSRAAVPPGTVVPTEAAAPTEVTEGPGVAAPTKVAEAPGVASPTEAAEAPVPATPTGA 229
Query: 97 ------AQSPGRSG---------TASAAAADPDT-----VRSPGGSDNIPTSSGRGSRRW 136
A+SPG SG T++A A P ++ + +P G+G R
Sbjct: 230 AAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGAIPKATSATGAVPKGGGKGVTRS 289
Query: 137 RRRGRGGG 144
R G+G G
Sbjct: 290 RNGGKGKG 297
>gi|29540562 ALEX2 protein [Homo sapiens]
Length = 632
Score = 39.3 bits (90), Expect = 0.001
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 29/128 (22%)
Query: 46 AEFSQAALTPEEALAPSSSSPLQAGD-VGLTARSQKAGPSGARSPRSAVETP-------- 96
AE S+AA+ P + +++P + + G+ A ++ A G SP A E P
Sbjct: 170 AETSRAAVPPGTVVPTEAAAPTEVTEGPGVAAPTKVAEAPGVASPTEAAEAPVPATPTGA 229
Query: 97 ------AQSPGRSG---------TASAAAADPDT-----VRSPGGSDNIPTSSGRGSRRW 136
A+SPG SG T++A A P ++ + +P G+G R
Sbjct: 230 AAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGAIPKATSATGAVPKGGGKGVTRS 289
Query: 137 RRRGRGGG 144
R G+G G
Sbjct: 290 RNGGKGKG 297
>gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo
sapiens]
Length = 681
Score = 38.9 bits (89), Expect = 0.002
Identities = 41/155 (26%), Positives = 57/155 (36%), Gaps = 39/155 (25%)
Query: 34 PGRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAV 93
P PV LRS + E + P + L P S +GD +A S ++GP G RS +
Sbjct: 318 PEMTPVSLRSTK-EGPETPPRPRDQLPPHPRSRRYSGDSDSSASSAQSGPLGTRSDDTGT 376
Query: 94 ETPAQSPGRSGTASAAAAD--PDTVRS--------------PGGSD---NIPTSSGR--- 131
+ P R T A+ P +RS PGG ++P+ + R
Sbjct: 377 GPRRERPSRRLTTGTPASPRRPPALRSQSRDRLDRGRPRGAPGGRGAQLSVPSPARRARS 436
Query: 132 ----------------GSRRWRRRGRGGGGGVASS 150
G W RGRG GG S+
Sbjct: 437 QSREEQAVLLVRRDRDGQHSWVPRGRGSGGSGRST 471
>gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo
sapiens]
Length = 681
Score = 38.9 bits (89), Expect = 0.002
Identities = 41/155 (26%), Positives = 57/155 (36%), Gaps = 39/155 (25%)
Query: 34 PGRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAV 93
P PV LRS + E + P + L P S +GD +A S ++GP G RS +
Sbjct: 318 PEMTPVSLRSTK-EGPETPPRPRDQLPPHPRSRRYSGDSDSSASSAQSGPLGTRSDDTGT 376
Query: 94 ETPAQSPGRSGTASAAAAD--PDTVRS--------------PGGSD---NIPTSSGR--- 131
+ P R T A+ P +RS PGG ++P+ + R
Sbjct: 377 GPRRERPSRRLTTGTPASPRRPPALRSQSRDRLDRGRPRGAPGGRGAQLSVPSPARRARS 436
Query: 132 ----------------GSRRWRRRGRGGGGGVASS 150
G W RGRG GG S+
Sbjct: 437 QSREEQAVLLVRRDRDGQHSWVPRGRGSGGSGRST 471
>gi|5174751 Yes-associated protein 1, 65kDa isoform 2 [Homo sapiens]
Length = 454
Score = 38.5 bits (88), Expect = 0.002
Identities = 33/106 (31%), Positives = 44/106 (41%), Gaps = 17/106 (16%)
Query: 33 LPGRF--PVQLRSHRAEFSQ-----AALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSG 85
LP F P + +SH + S ALTP+ A SS + LQ G V G
Sbjct: 91 LPDSFFKPPEPKSHSRQASTDAGTAGALTPQHVRAHSSPASLQLGAVS----------PG 140
Query: 86 ARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGR 131
+P V PA +P ++ PD V P G + TSSG+
Sbjct: 141 TLTPTGVVSGPAATPTAQHLRQSSFEIPDDVPLPAGWEMAKTSSGQ 186
>gi|194306653 Yes-associated protein 1, 65kDa isoform 1 [Homo
sapiens]
Length = 504
Score = 38.5 bits (88), Expect = 0.002
Identities = 33/106 (31%), Positives = 44/106 (41%), Gaps = 17/106 (16%)
Query: 33 LPGRF--PVQLRSHRAEFSQ-----AALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSG 85
LP F P + +SH + S ALTP+ A SS + LQ G V G
Sbjct: 91 LPDSFFKPPEPKSHSRQASTDAGTAGALTPQHVRAHSSPASLQLGAVS----------PG 140
Query: 86 ARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGR 131
+P V PA +P ++ PD V P G + TSSG+
Sbjct: 141 TLTPTGVVSGPAATPTAQHLRQSSFEIPDDVPLPAGWEMAKTSSGQ 186
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 37.4 bits (85), Expect = 0.005
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 6/129 (4%)
Query: 22 RHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKA 81
+H+ ++ PG P S RA + AA AP ++ +G G +R Q +
Sbjct: 112 QHQSGSRLRPAAPGPRP-GCSSARASPAPAAPQAAARTAPGRAA---SGGSGPGSRGQGS 167
Query: 82 GPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGSRRWRRRGR 141
GAR R+ + P + R A +A P R PG SG G+R G
Sbjct: 168 DQVGARPSRAGGQPPPLTCRRCRAAPRRSARP--FRRPGLPLKSRPGSGTGARSCGTWGS 225
Query: 142 GGGGGVASS 150
GGG G A++
Sbjct: 226 GGGPGTAAA 234
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 37.4 bits (85), Expect = 0.005
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 6/129 (4%)
Query: 22 RHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKA 81
+H+ ++ PG P S RA + AA AP ++ +G G +R Q +
Sbjct: 112 QHQSGSRLRPAAPGPRP-GCSSARASPAPAAPQAAARTAPGRAA---SGGSGPGSRGQGS 167
Query: 82 GPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGSRRWRRRGR 141
GAR R+ + P + R A +A P R PG SG G+R G
Sbjct: 168 DQVGARPSRAGGQPPPLTCRRCRAAPRRSARP--FRRPGLPLKSRPGSGTGARSCGTWGS 225
Query: 142 GGGGGVASS 150
GGG G A++
Sbjct: 226 GGGPGTAAA 234
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 37.4 bits (85), Expect = 0.005
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 6/129 (4%)
Query: 22 RHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKA 81
+H+ ++ PG P S RA + AA AP ++ +G G +R Q +
Sbjct: 112 QHQSGSRLRPAAPGPRP-GCSSARASPAPAAPQAAARTAPGRAA---SGGSGPGSRGQGS 167
Query: 82 GPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGSRRWRRRGR 141
GAR R+ + P + R A +A P R PG SG G+R G
Sbjct: 168 DQVGARPSRAGGQPPPLTCRRCRAAPRRSARP--FRRPGLPLKSRPGSGTGARSCGTWGS 225
Query: 142 GGGGGVASS 150
GGG G A++
Sbjct: 226 GGGPGTAAA 234
>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
sapiens]
Length = 601
Score = 37.4 bits (85), Expect = 0.005
Identities = 23/77 (29%), Positives = 31/77 (40%)
Query: 73 GLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRG 132
GLT P A+ P +A + +P + S A P T P S + + +G G
Sbjct: 75 GLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPSTSGSASSDAGSG 134
Query: 133 SRRWRRRGRGGGGGVAS 149
SRR G G G S
Sbjct: 135 SRRSSGGGPSPGAGEGS 151
Score = 29.3 bits (64), Expect = 1.3
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 19 TLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARS 78
TL +H + + L + P + + A + + TP+ A APS++ A +
Sbjct: 66 TLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPSTSG 125
Query: 79 QKAGPSGARSPRSAVETPAQSPGRSGTASAAAA 111
+ +G+ S RS+ P+ G G+ SA A+
Sbjct: 126 SASSDAGSGSRRSSGGGPSPGAG-EGSPSATAS 157
>gi|194248057 growth associated protein 43 isoform 1 [Homo sapiens]
Length = 274
Score = 37.0 bits (84), Expect = 0.006
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 54 TPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADP 113
T EA + S P + G G T +K G A + ++A + PA S ++G+A +A
Sbjct: 122 TTAEAAPATGSKPDEPGKAGETPSEEKKGEGDAATEQAAPQAPASSEEKAGSAETESA-- 179
Query: 114 DTVRSPGGSDNIPTS 128
+ +DN P+S
Sbjct: 180 ----TKASTDNSPSS 190
>gi|4503911 growth associated protein 43 isoform 2 [Homo sapiens]
Length = 238
Score = 37.0 bits (84), Expect = 0.006
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 54 TPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADP 113
T EA + S P + G G T +K G A + ++A + PA S ++G+A +A
Sbjct: 86 TTAEAAPATGSKPDEPGKAGETPSEEKKGEGDAATEQAAPQAPASSEEKAGSAETESA-- 143
Query: 114 DTVRSPGGSDNIPTS 128
+ +DN P+S
Sbjct: 144 ----TKASTDNSPSS 154
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 36.6 bits (83), Expect = 0.008
Identities = 32/102 (31%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 51 AALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQS------PGRSG 104
A + P + + P A G T + A SP ++ PA S P
Sbjct: 6 ALIPPTQLVPPQPPISTSASSSGTTTSTSSA----TSSPAPSIGPPASSGPTLFRPEPIA 61
Query: 105 TASAAAADPDTVRSPGGSDNIPTSSGRGSRRWRRRGRGGGGG 146
+A+AAAA TV S GG S G G G GGGGG
Sbjct: 62 SAAAAAA---TVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGG 100
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 36.6 bits (83), Expect = 0.008
Identities = 32/102 (31%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 51 AALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQS------PGRSG 104
A + P + + P A G T + A SP ++ PA S P
Sbjct: 6 ALIPPTQLVPPQPPISTSASSSGTTTSTSSA----TSSPAPSIGPPASSGPTLFRPEPIA 61
Query: 105 TASAAAADPDTVRSPGGSDNIPTSSGRGSRRWRRRGRGGGGG 146
+A+AAAA TV S GG S G G G GGGGG
Sbjct: 62 SAAAAAA---TVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGG 100
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 36.6 bits (83), Expect = 0.008
Identities = 32/102 (31%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 51 AALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQS------PGRSG 104
A + P + + P A G T + A SP ++ PA S P
Sbjct: 6 ALIPPTQLVPPQPPISTSASSSGTTTSTSSA----TSSPAPSIGPPASSGPTLFRPEPIA 61
Query: 105 TASAAAADPDTVRSPGGSDNIPTSSGRGSRRWRRRGRGGGGG 146
+A+AAAA TV S GG S G G G GGGGG
Sbjct: 62 SAAAAAA---TVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGG 100
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 36.2 bits (82), Expect = 0.011
Identities = 36/114 (31%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Query: 35 GRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVE 94
GR P Q + AE + A P P +S P+ G + R G A A +
Sbjct: 6 GRPPKQPAAPAAE--RCAPAPPPPPPPPTSGPI--GGLRSRHRGSSRGRWAAAQAEVAPK 61
Query: 95 TPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGSRRWRRRGRGGGGGVA 148
T SP R G++S P P S + P GRG R G GGGG +A
Sbjct: 62 TRLSSP-RGGSSSRRKPPPPPPAPP--STSAPGRGGRGGGGGRTGGGGGGGHLA 112
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 36.2 bits (82), Expect = 0.011
Identities = 36/114 (31%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Query: 35 GRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVE 94
GR P Q + AE + A P P +S P+ G + R G A A +
Sbjct: 6 GRPPKQPAAPAAE--RCAPAPPPPPPPPTSGPI--GGLRSRHRGSSRGRWAAAQAEVAPK 61
Query: 95 TPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGSRRWRRRGRGGGGGVA 148
T SP R G++S P P S + P GRG R G GGGG +A
Sbjct: 62 TRLSSP-RGGSSSRRKPPPPPPAPP--STSAPGRGGRGGGGGRTGGGGGGGHLA 112
>gi|4507831 Unc-51-like kinase 1 [Homo sapiens]
Length = 1050
Score = 35.8 bits (81), Expect = 0.014
Identities = 25/72 (34%), Positives = 30/72 (41%)
Query: 62 SSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGG 121
S S P A G+ AR G +P V T + PG SGT S A+ RSP
Sbjct: 477 SPSPPAHAEHGGVLARKMSLGGGRPYTPSPQVGTIPERPGWSGTPSPQGAEMRGGRSPRP 536
Query: 122 SDNIPTSSGRGS 133
+ P S R S
Sbjct: 537 GSSAPEHSPRTS 548
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 35.0 bits (79), Expect = 0.024
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 16/128 (12%)
Query: 38 PVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPA 97
P L+S ++ +L P + +S + + S K PS S RS V + A
Sbjct: 29 PASLKSTKSATPNRSLVPTKPATSRNSVMSPSSSKSTKSTSTKRAPSNRPSSRSRVRSKA 88
Query: 98 QSPGR--SGTASAAAADPDTV------------RSPG--GSDNIPTSSGRGSRRWRRRGR 141
++P R + T ++ A+ V R+PG GS + S R S R R
Sbjct: 89 RTPSRVSTDTRTSKASKASDVRCHQRRGTHSRGRTPGRRGSRSSKRSPSRASTPGRIRTH 148
Query: 142 GGGGGVAS 149
G G+AS
Sbjct: 149 GARPGMAS 156
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 35.0 bits (79), Expect = 0.024
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 31 TILPGRFPVQ-LRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSP 89
T LPG L F + +P L+P+S + L G+ T+RSQ SP
Sbjct: 2312 TTLPGSTTTPGLSEASTTFYSSPRSPTTTLSPASMTSLGVGEESTTSRSQPGSTHSTVSP 2371
Query: 90 RSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRG 132
S TP S + S++ +T P PT+S RG
Sbjct: 2372 ASTT-TPGLSEESTTVYSSSPGSTETTVFP----RTPTTSVRG 2409
Score = 32.3 bits (72), Expect = 0.15
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 31 TILPGRFPVQ-LRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSP 89
T LPG L F + +P L+P+S + L G+ T+RSQ SP
Sbjct: 2786 TTLPGSTTTPGLSEASTTFYSSPRSPTTTLSPASMTSLGVGEESTTSRSQPGSTHSTVSP 2845
Query: 90 RSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRG 132
S TP S + S++ +T P + T+S RG
Sbjct: 2846 ASTT-TPGLSEESTTVYSSSPGSTETTVFPRST----TTSVRG 2883
Score = 31.6 bits (70), Expect = 0.26
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 31 TILPGRFPVQ-LRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSP 89
T LPG L F + +P L+P+S + L G+ T+RSQ SP
Sbjct: 1229 TTLPGSTTTPGLSEASTTFYSSPRSPTTTLSPASMTSLGVGEESTTSRSQPGSTHSTVSP 1288
Query: 90 RSAVETPAQSPGRSGTASAAAADPDTVRSP 119
S TP S + S++ +T P
Sbjct: 1289 ASTT-TPGLSEESTTVYSSSRGSTETTVFP 1317
Score = 31.6 bits (70), Expect = 0.26
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 31 TILPGRFPVQ-LRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSP 89
T LPG L F + +P L+P+S + L G+ T+RSQ SP
Sbjct: 3869 TTLPGSTTTPGLSEASTTFYSSPRSPTTTLSPASMTSLGVGEESTTSRSQPGSTHSTVSP 3928
Query: 90 RSAVETPAQSPGRSGTASAAAADPDTVRSP 119
S TP S + S++ +T P
Sbjct: 3929 ASTT-TPGLSEESTTVYSSSPGSTETTVFP 3957
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 34.3 bits (77), Expect = 0.041
Identities = 44/155 (28%), Positives = 61/155 (39%), Gaps = 25/155 (16%)
Query: 16 RQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEE----ALAPSSSSPLQAGD 71
+Q + H P + T + R +QL++ + A L P++ L P + QAG
Sbjct: 1171 QQPASRSHGAAPALDTAITSR--LQLQTPPGSATAADLRPKQPPGRGLGPGRA---QAGA 1225
Query: 72 VGLTARSQK--AGPSGAR----SPRSAVETPAQSPGRSGTASA----------AAADPDT 115
RS + A S AR SPRS + +SP S A A A PD
Sbjct: 1226 RPPAPRSPRLPASTSAARNASASPRSQSLSRRESPSPSHQARPGVPPPRGVPPARAQPDG 1285
Query: 116 VRSPGGSDNIPTSSGRGSRRWRRRGRGGGGGVASS 150
SPGGS P + R + GG G A +
Sbjct: 1286 TPSPGGSKKGPRGKLQAQRATTKGRAGGAEGRAGA 1320
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 33.9 bits (76), Expect = 0.053
Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 16/82 (19%)
Query: 68 QAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPG------- 120
Q GD G+ +AGP G P ++ P PG G DP TV PG
Sbjct: 466 QPGDPGVPGFKGEAGPKGEPGPH-GIQGPIGPPGEEG-KRGPRGDPGTVGPPGPVGERGA 523
Query: 121 -------GSDNIPTSSGRGSRR 135
GSD +P G R
Sbjct: 524 PGNRGFPGSDGLPGPKGAQGER 545
Score = 28.1 bits (61), Expect = 2.9
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 16/70 (22%)
Query: 66 PLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPG----- 120
P +G G +AGP+GAR P E P G +G P V SPG
Sbjct: 374 PGSSGFPGNPGMKGEAGPTGARGP----EGPQGQRGETG-------PPGPVGSPGLPGAI 422
Query: 121 GSDNIPTSSG 130
G+D P + G
Sbjct: 423 GTDGTPGAKG 432
>gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo
sapiens]
Length = 537
Score = 33.9 bits (76), Expect = 0.053
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 83 PSGARSPRSAVETPAQSPGRSGTASAA--------AADPDTVRSPGGSDNIPTSSGRGSR 134
P AR+PR + + R+ TA + A D V G + P RG
Sbjct: 152 PPAARTPRDGLRDRGRLLSRNSTARRSFLELKEVDAVDEQDVVREGEAPTPP----RGKT 207
Query: 135 RWRRRGRGGGGGVASS 150
+RR+GRGGGG A S
Sbjct: 208 SFRRQGRGGGGARAIS 223
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 33.9 bits (76), Expect = 0.053
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 68 QAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAA-----DPDTVRSPGGS 122
Q G GL S GP G R P+ P ++ GR G A A A DP V+ G
Sbjct: 417 QPGSPGLKGESGDLGPQGPRGPQGLTGPPGKA-GRRGRAGADGARGMPGDPG-VKGDRGF 474
Query: 123 DNIPTSSGRGSRR 135
D +P G R
Sbjct: 475 DGLPGLPGEKGHR 487
Score = 30.0 bits (66), Expect = 0.76
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 66 PLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGT--ASAAAADPDTVRSPG 120
P Q G G T + GP G R PA SPG G A DP + +PG
Sbjct: 1213 PGQPGSPGPTGENGPPGPLGKRG-------PAGSPGSEGRQGGKGAKGDPGAIGAPG 1262
Score = 28.9 bits (63), Expect = 1.7
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 66 PLQAGDVGLTARSQKAGPSGARSPRS--AVETPAQSPGRSGTASAAAADPDTVRSPGGSD 123
P +G+ G S K+GP G R P P + G+SG + D P G
Sbjct: 733 PGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGP--HGPPGER 790
Query: 124 NIPTSSG 130
+P G
Sbjct: 791 GLPGPQG 797
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 33.9 bits (76), Expect = 0.053
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 68 QAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAA-----DPDTVRSPGGS 122
Q G GL S GP G R P+ P ++ GR G A A A DP V+ G
Sbjct: 396 QPGSPGLKGESGDLGPQGPRGPQGLTGPPGKA-GRRGRAGADGARGMPGDPG-VKGDRGF 453
Query: 123 DNIPTSSGRGSRR 135
D +P G R
Sbjct: 454 DGLPGLPGEKGHR 466
Score = 30.0 bits (66), Expect = 0.76
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 66 PLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGT--ASAAAADPDTVRSPG 120
P Q G G T + GP G R PA SPG G A DP + +PG
Sbjct: 1192 PGQPGSPGPTGENGPPGPLGKRG-------PAGSPGSEGRQGGKGAKGDPGAIGAPG 1241
Score = 28.9 bits (63), Expect = 1.7
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 66 PLQAGDVGLTARSQKAGPSGARSPRS--AVETPAQSPGRSGTASAAAADPDTVRSPGGSD 123
P +G+ G S K+GP G R P P + G+SG + D P G
Sbjct: 712 PGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGP--HGPPGER 769
Query: 124 NIPTSSG 130
+P G
Sbjct: 770 GLPGPQG 776
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 33.9 bits (76), Expect = 0.053
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 68 QAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAA-----DPDTVRSPGGS 122
Q G GL S GP G R P+ P ++ GR G A A A DP V+ G
Sbjct: 503 QPGSPGLKGESGDLGPQGPRGPQGLTGPPGKA-GRRGRAGADGARGMPGDPG-VKGDRGF 560
Query: 123 DNIPTSSGRGSRR 135
D +P G R
Sbjct: 561 DGLPGLPGEKGHR 573
Score = 30.0 bits (66), Expect = 0.76
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Query: 66 PLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGT--ASAAAADPDTVRSPG 120
P Q G G T + GP G R PA SPG G A DP + +PG
Sbjct: 1299 PGQPGSPGPTGENGPPGPLGKRG-------PAGSPGSEGRQGGKGAKGDPGAIGAPG 1348
Score = 28.9 bits (63), Expect = 1.7
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 66 PLQAGDVGLTARSQKAGPSGARSPRS--AVETPAQSPGRSGTASAAAADPDTVRSPGGSD 123
P +G+ G S K+GP G R P P + G+SG + D P G
Sbjct: 819 PGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGP--HGPPGER 876
Query: 124 NIPTSSG 130
+P G
Sbjct: 877 GLPGPQG 883
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 33.9 bits (76), Expect = 0.053
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 60 APSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSP 119
APS+ +P A L A P+ A +P + E PAQ+P T + A T+ S
Sbjct: 514 APSTPAPPPAVPKELPAPPAPP-PASAPTPETEPEEPAQAPPAQSTPTPGVAAAPTLVSG 572
Query: 120 GGSDNIPTSSG 130
GGS + TSSG
Sbjct: 573 GGSTS-STSSG 582
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.126 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,905,190
Number of Sequences: 37866
Number of extensions: 357766
Number of successful extensions: 3734
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 471
Number of HSP's that attempted gapping in prelim test: 2986
Number of HSP's gapped (non-prelim): 1182
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.