Guide to the Human Genome
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Name: LOC100130363 Sequence: fasta or formatted (150aa) NCBI GI: 169208709
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {150aa} PREDICTED: hypothetical protein
alt prot {200aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         17           4
 C cysteine            0.7          1           1
 D aspartate           2.7          4           1
 E glutamate           4.7          7           2
 F phenylalanine       2.0          3           1
 G glycine            11.3         17           5
 H histidine           3.3          5           1
 I isoleucine          2.0          3           1
 K lysine              2.0          3           1
 L leucine             5.3          8           1
 M methionine          1.3          2           1
 N asparagine          0.7          1           1
 P proline             8.7         13           1
 Q glutamine           6.0          9           1
 R arginine           12.7         19           3
 S serine             14.0         21           4
 T threonine           6.0          9           1
 V valine              4.7          7           1
 W tryptophan          0.7          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130363          1.000   PREDICTED: hypothetical protein 
LOC100130363          0.895   PREDICTED: hypothetical protein 
ARMCX2                0.051   ALEX2 protein 
ARMCX2                0.051   ALEX2 protein 
GAS2L1                0.051   growth arrest-specific 2 like 1 isoform a 
GAS2L1                0.051   growth arrest-specific 2 like 1 isoform a 
YAP1                  0.051   Yes-associated protein 1, 65kDa isoform 2 
YAP1                  0.051   Yes-associated protein 1, 65kDa isoform 1 
LOC100291634          0.043   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.043   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.043   PREDICTED: hypothetical protein 
UBQLN4                0.043   ataxin-1 ubiquitin-like interacting protein 
GAP43                 0.043   growth associated protein 43 isoform 1 
GAP43                 0.043   growth associated protein 43 isoform 2 
DACH1                 0.043   dachshund homolog 1 isoform b 
DACH1                 0.043   dachshund homolog 1 isoform a 
DACH1                 0.043   dachshund homolog 1 isoform c 
BPTF                  0.040   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.040   bromodomain PHD finger transcription factor isoform ...
ULK1                  0.040   Unc-51-like kinase 1 
LOC100170229          0.036   hypothetical protein LOC100170229 
MUC12                 0.036   PREDICTED: mucin 12 
TTBK1                 0.033   tau tubulin kinase 1 
COL5A2                0.033   alpha 2 type V collagen preproprotein 
LOC100289969          0.033   PREDICTED: hypothetical protein XP_002347692 
COL11A2               0.033   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.033   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.033   collagen, type XI, alpha 2 isoform 1 preproprotein ...
BAT2                  0.033   HLA-B associated transcript-2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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