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Search of human proteins with 169208488
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169208488 PREDICTED: hypothetical protein [Homo sapiens]
(150 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169208488 PREDICTED: hypothetical protein [Homo sapiens] 308 9e-85
gi|169208304 PREDICTED: hypothetical protein [Homo sapiens] 110 6e-25
gi|124494251 BCL2-associated athanogene isoform 1L [Homo sapiens] 43 9e-05
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 37 0.006
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 37 0.006
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 37 0.006
gi|190014615 hypothetical protein LOC157983 [Homo sapiens] 37 0.006
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 37 0.008
gi|13994190 frizzled 8 [Homo sapiens] 37 0.008
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 36 0.011
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 36 0.011
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 36 0.011
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 36 0.011
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 36 0.011
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 36 0.011
gi|239755857 PREDICTED: hypothetical protein [Homo sapiens] 36 0.014
gi|239750361 PREDICTED: hypothetical protein XP_002347406 [Homo ... 36 0.014
gi|239744665 PREDICTED: hypothetical protein XP_002343232 [Homo ... 36 0.014
gi|24497513 homeobox A3 isoform a [Homo sapiens] 35 0.018
gi|13562112 homeobox A3 isoform a [Homo sapiens] 35 0.018
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 35 0.018
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 35 0.018
gi|239753576 PREDICTED: hypothetical protein [Homo sapiens] 35 0.024
gi|239748084 PREDICTED: hypothetical protein [Homo sapiens] 35 0.024
gi|189491742 ataxin 7 isoform b [Homo sapiens] 35 0.024
gi|4506797 ataxin 7 isoform a [Homo sapiens] 35 0.024
gi|239756833 PREDICTED: hypothetical protein [Homo sapiens] 35 0.031
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 35 0.031
gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo ... 35 0.031
gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo ... 35 0.031
>gi|169208488 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 308 bits (790), Expect = 9e-85
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MGPKRSAGDAGSHLRAQRLGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREKGA 60
MGPKRSAGDAGSHLRAQRLGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREKGA
Sbjct: 1 MGPKRSAGDAGSHLRAQRLGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREKGA 60
Query: 61 RSPRLGNRGLSRAGSPLSRDSGRLLSALALPREAATGRLTVMLQWSVSCGGGSWFLWKIE 120
RSPRLGNRGLSRAGSPLSRDSGRLLSALALPREAATGRLTVMLQWSVSCGGGSWFLWKIE
Sbjct: 61 RSPRLGNRGLSRAGSPLSRDSGRLLSALALPREAATGRLTVMLQWSVSCGGGSWFLWKIE 120
Query: 121 ANNFSLALNPHTDILLSPLAGGARKHQPCA 150
ANNFSLALNPHTDILLSPLAGGARKHQPCA
Sbjct: 121 ANNFSLALNPHTDILLSPLAGGARKHQPCA 150
>gi|169208304 PREDICTED: hypothetical protein [Homo sapiens]
Length = 49
Score = 110 bits (274), Expect = 6e-25
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 102 MLQWSVSCGGGSWFLWKIEANNFSLALNPHTDILLSPLAGGARKHQPCA 150
MLQWSVSCGGGSWFLWKIEANNFSLALNPHTDILLSPLAGGARKHQPCA
Sbjct: 1 MLQWSVSCGGGSWFLWKIEANNFSLALNPHTDILLSPLAGGARKHQPCA 49
>gi|124494251 BCL2-associated athanogene isoform 1L [Homo sapiens]
Length = 345
Score = 43.1 bits (100), Expect = 9e-05
Identities = 36/100 (36%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 2 GPKRSAGDA---GSHLRAQRLGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREK 58
G +R GD GS LRA R GRE + PA R RPP T + H +
Sbjct: 6 GARRPRGDRERLGSRLRALRPGREPRQSEPPAQRGPPPSGRPPARSTASGHDRPTRGAAA 65
Query: 59 GARSPRL--GNRGLSRAGSPLSRDSGRLLSALALPREAAT 96
GAR PR+ R S L+R LS A E AT
Sbjct: 66 GARRPRMKKKTRRRSTRSEELTRSEELTLSEEATWSEEAT 105
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 37.0 bits (84), Expect = 0.006
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 3 PKRSAGDAGSHLRA----QRLGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQ-TRE 57
PKR AG + A +R P P PAPR+ RP P ++ + A TRE
Sbjct: 89 PKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRR----PRPAPGRRKSLYEAAPLLTRE 144
Query: 58 KGARSPRLGNRG 69
KG RS R G+RG
Sbjct: 145 KGGRSGRRGDRG 156
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 37.0 bits (84), Expect = 0.006
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 3 PKRSAGDAGSHLRA----QRLGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQ-TRE 57
PKR AG + A +R P P PAPR+ RP P ++ + A TRE
Sbjct: 89 PKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRR----PRPAPGRRKSLYEAAPLLTRE 144
Query: 58 KGARSPRLGNRG 69
KG RS R G+RG
Sbjct: 145 KGGRSGRRGDRG 156
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 37.0 bits (84), Expect = 0.006
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 3 PKRSAGDAGSHLRA----QRLGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQ-TRE 57
PKR AG + A +R P P PAPR+ RP P ++ + A TRE
Sbjct: 89 PKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRR----PRPAPGRRKSLYEAAPLLTRE 144
Query: 58 KGARSPRLGNRG 69
KG RS R G+RG
Sbjct: 145 KGGRSGRRGDRG 156
>gi|190014615 hypothetical protein LOC157983 [Homo sapiens]
Length = 295
Score = 37.0 bits (84), Expect = 0.006
Identities = 28/67 (41%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 24 PAAPKPAPRQ-GARETRPPPPPTQASHSGAGQTREKGAR-SPRLGNRGLSRAGSPLSRDS 81
PAAP P PR+ GA R PP T+ SG G E S L R L AG L D
Sbjct: 67 PAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSGRNLRAAGGVLPVDL 126
Query: 82 GRLLSAL 88
R +AL
Sbjct: 127 ERERAAL 133
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 36.6 bits (83), Expect = 0.008
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 18 RLGREVPAAPKPAPRQGARETRPPPPP--------TQASHSGAGQTREKGARSPRLGNRG 69
R G +P + P P G+R + PPP S + AG + G+R + G
Sbjct: 158 RAGGGIPGSSSPHPGTGSRRLKVAPPPPAPKPCKTVTTSGAKAGGGKGAGSRLSWPESEG 217
Query: 70 LSRA-GSPLSRDSGRLLSALALPREAATGRLTVMLQWSVSCGGGS 113
R GS S +G +SA A A G T V G G+
Sbjct: 218 KPRVKGSKSSAGTGASVSAAATAAAAGGGGSTASTSGGVGAGAGA 262
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 36.6 bits (83), Expect = 0.008
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 25 AAPKPAPRQGARETRPPPPPTQASHSGAGQTREKGARSPRLG---NRGLSRAGSPLSRDS 81
AAP P R PPPPP + SG+G R GAR P G G A +P +R
Sbjct: 159 AAPSPPRRL------PPPPPGEQPPSGSGHGRPPGARPPHRGGGRGGGGGDAAAPPARGG 212
Query: 82 G 82
G
Sbjct: 213 G 213
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 36.2 bits (82), Expect = 0.011
Identities = 30/101 (29%), Positives = 37/101 (36%), Gaps = 15/101 (14%)
Query: 3 PKRSAGDAGSHLRAQRLGREVPAAPKPAPRQGARET-------RPPP-----PPTQASHS 50
PKRSA AG+ + P P PA + +R RP P PPT+
Sbjct: 151 PKRSALSAGAR---RDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRK 207
Query: 51 GAGQTREKGARSPRLGNRGLSRAGSPLSRDSGRLLSALALP 91
E P R AG L R + R LS+ A P
Sbjct: 208 SVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATP 248
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 36.2 bits (82), Expect = 0.011
Identities = 30/101 (29%), Positives = 37/101 (36%), Gaps = 15/101 (14%)
Query: 3 PKRSAGDAGSHLRAQRLGREVPAAPKPAPRQGARET-------RPPP-----PPTQASHS 50
PKRSA AG+ + P P PA + +R RP P PPT+
Sbjct: 151 PKRSALSAGAR---RDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRK 207
Query: 51 GAGQTREKGARSPRLGNRGLSRAGSPLSRDSGRLLSALALP 91
E P R AG L R + R LS+ A P
Sbjct: 208 SVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATP 248
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 36.2 bits (82), Expect = 0.011
Identities = 30/101 (29%), Positives = 37/101 (36%), Gaps = 15/101 (14%)
Query: 3 PKRSAGDAGSHLRAQRLGREVPAAPKPAPRQGARET-------RPPP-----PPTQASHS 50
PKRSA AG+ + P P PA + +R RP P PPT+
Sbjct: 142 PKRSALSAGAR---RDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRK 198
Query: 51 GAGQTREKGARSPRLGNRGLSRAGSPLSRDSGRLLSALALP 91
E P R AG L R + R LS+ A P
Sbjct: 199 SVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATP 239
Score = 27.7 bits (60), Expect = 3.8
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 6 SAGDAGSHLRAQRLGREVPAA-PKPAPRQGARETRPPPPPTQASHSGAGQTREKGARSPR 64
+AG G A+R G A P+ APR G T PP + + + G S
Sbjct: 49 AAGAVGRKPLAERAGGIGGATIPESAPRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSP 108
Query: 65 LGNRGLSRAGSPLSRDSGRLLSALALPREAAT 96
G +R G PL + R+ + + R AT
Sbjct: 109 GRASGTTRPG-PLGQKGLRISAEETVARGKAT 139
Score = 27.7 bits (60), Expect = 3.8
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Query: 3 PKRSAGDAGSHLRAQRLGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREKGARS 62
P++ A A L + L P+AP + +T P PP T S + T G+ +
Sbjct: 279 PRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQA----TTSLGSPT 334
Query: 63 PRLGNRGL-SRAGSPLSRDSGRLLSALALP 91
+ + L S SPL+ + ALALP
Sbjct: 335 LQATHSFLPSPPLSPLATPPPQAPPALALP 364
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 36.2 bits (82), Expect = 0.011
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 20 GREVPAAPKPAPRQGARE--TRPPPPPTQASHSGAGQTR-----EKGARSPRLGNRGLSR 72
G P P+PAP + E R PPPP +H G+ + R G R P G R
Sbjct: 34 GLRDPPPPRPAPPRPGEEPGNRHPPPPAARTHPGSCRARCPSPAAGGLRGPWTAAPGRQR 93
Query: 73 A--GSPLSRDSGRLLSALALPREAA 95
A G+ +R + + A LP AA
Sbjct: 94 ADEGAAAARPERQRVWARRLPGSAA 118
Score = 26.9 bits (58), Expect = 6.5
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 8 GDAGSHLRAQRL-GREVP-AAPKPAPRQGARETRPPPPP 44
G A + QR+ R +P +A PAP + A PPPPP
Sbjct: 97 GAAAARPERQRVWARRLPGSAAAPAPGRDALRLPPPPPP 135
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 36.2 bits (82), Expect = 0.011
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 26 APKPAPRQGARETRPPPPPTQASHSGAGQTREKGARSPRLGNRGLSRAGS 75
AP PAP Q + T P P PT+ + +E+ AR+P R LS +GS
Sbjct: 641 APPPAPPQATKTTAPVPEPTKPGDPREARRKERPARTPP-RRRTLSGSGS 689
Score = 26.6 bits (57), Expect = 8.5
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 5 RSAGDAGSHLRAQRLGREVPAAPKPAPRQGARETR--PPPPPTQASHSGAGQTREKGARS 62
R + +GS R++ +P P+P + + T+ P PPP G+ EK +
Sbjct: 588 RHSSFSGSRSRSRSFSSSPSPSPTPSPHRPSIRTKGEPAPPP--------GKAGEKSVKK 639
Query: 63 P 63
P
Sbjct: 640 P 640
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 36.2 bits (82), Expect = 0.011
Identities = 40/121 (33%), Positives = 47/121 (38%), Gaps = 34/121 (28%)
Query: 2 GPKRSAGDAGSHLRAQRLGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREKGAR 61
GP+R+ A + RE P P P P ++ +PPPP Q G G R GA
Sbjct: 195 GPRRAPPPAVA-------AREPPLPPPPQPPAPPQQQQPPPPQPQPPPEG-GAVRAGGAA 246
Query: 62 SP--------RLGNRGLSRAGSPLSRD------------SGRL----LSALALPREAATG 97
P LG G AG L+R GRL L ALALPR G
Sbjct: 247 RPVSLREVVRYLGGSG--GAGGRLTRGRVQGLLEEEAAARGRLERTRLGALALPRGDRPG 304
Query: 98 R 98
R
Sbjct: 305 R 305
Score = 26.9 bits (58), Expect = 6.5
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 24 PAAPKPAPRQGARETRPP---PPPTQASHSGAGQTREKGARSPRLGNRGLSRAGSP 76
P AP+ AP A PP PPP A + A AR+PR + SP
Sbjct: 112 PRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAP-----ARAPRAAAAAATAPPSP 162
>gi|239755857 PREDICTED: hypothetical protein [Homo sapiens]
Length = 82
Score = 35.8 bits (81), Expect = 0.014
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 19 LGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREKG-ARSPRLGNRGLSRAGSPL 77
LG VPAA PRQ PP T +S +G + R +G R R G RG SR L
Sbjct: 17 LGLRVPAATPKTPRQ--------PPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIADRL 68
Query: 78 SRDSG 82
D G
Sbjct: 69 RGDPG 73
>gi|239750361 PREDICTED: hypothetical protein XP_002347406 [Homo
sapiens]
Length = 82
Score = 35.8 bits (81), Expect = 0.014
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 19 LGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREKG-ARSPRLGNRGLSRAGSPL 77
LG VPAA PRQ PP T +S +G + R +G R R G RG SR L
Sbjct: 17 LGLRVPAATPKTPRQ--------PPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIADRL 68
Query: 78 SRDSG 82
D G
Sbjct: 69 RGDPG 73
>gi|239744665 PREDICTED: hypothetical protein XP_002343232 [Homo
sapiens]
Length = 82
Score = 35.8 bits (81), Expect = 0.014
Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 19 LGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREKG-ARSPRLGNRGLSRAGSPL 77
LG VPAA PRQ PP T +S +G + R +G R R G RG SR L
Sbjct: 17 LGLRVPAATPKTPRQ--------PPSTSSSSAGLQEGRWRGLPRRSRPGARGRSRIADRL 68
Query: 78 SRDSG 82
D G
Sbjct: 69 RGDPG 73
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 35.4 bits (80), Expect = 0.018
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 6 SAGDAGSHLRAQRLGREVPAAPKPAPRQGARETRPPPPPTQAS---HSGAGQTREKGARS 62
S G+ H + P P+PAP+ A PPPP+ AS ++ T A+S
Sbjct: 84 SLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKS 143
Query: 63 PRLGNRGLSRAGSPLSRDS 81
P L + +++ P ++S
Sbjct: 144 PLLNSPTVAKQIFPWMKES 162
Score = 27.3 bits (59), Expect = 5.0
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 5 RSAGDAGSHLRAQRLG----REVPAAPKPAPRQGARETRPPPP 43
+S AG H +A L R + A P P G PPPP
Sbjct: 53 QSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPP 95
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 35.4 bits (80), Expect = 0.018
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 6 SAGDAGSHLRAQRLGREVPAAPKPAPRQGARETRPPPPPTQAS---HSGAGQTREKGARS 62
S G+ H + P P+PAP+ A PPPP+ AS ++ T A+S
Sbjct: 84 SLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKS 143
Query: 63 PRLGNRGLSRAGSPLSRDS 81
P L + +++ P ++S
Sbjct: 144 PLLNSPTVAKQIFPWMKES 162
Score = 27.3 bits (59), Expect = 5.0
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 5 RSAGDAGSHLRAQRLG----REVPAAPKPAPRQGARETRPPPP 43
+S AG H +A L R + A P P G PPPP
Sbjct: 53 QSPSSAGGHPKAHELSEACLRTLSAPPSQPPSLGEPPLHPPPP 95
>gi|148806908 fibronectin type III domain containing 1 [Homo sapiens]
Length = 1894
Score = 35.4 bits (80), Expect = 0.018
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
Query: 3 PKRSAGDAGSHLRAQR----LGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREK 58
PK G H R ++ P+ P+ G + PPPP S G
Sbjct: 965 PKAQPGSTDRHASPARPPAARSQQHPSVPRRMT-PGRAPQQQPPPPVATSQHHPGPQSRD 1023
Query: 59 GARSPRLGNRGLSRAGSPLSRDSGRLLSALALPREAATGRLTVMLQ 104
RSP L++AG P GR S+ ++ G L LQ
Sbjct: 1024 AGRSPSQPRLSLTQAGRPRPTSQGRSHSSSDPYTASSRGMLPTALQ 1069
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 35.4 bits (80), Expect = 0.018
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 15 RAQRLGREVPAAPKPAPRQGA-RETRPPPPPTQASHSGAGQTREKG---------ARSPR 64
+ R P +PKPAP G+ RE P SH A + + +RSP
Sbjct: 429 KVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPA 488
Query: 65 LGNRGLSRAGSPLSRDSGR 83
RG SR+ +P R R
Sbjct: 489 TAKRGRSRSRTPTKRGHSR 507
Score = 31.6 bits (70), Expect = 0.26
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 21 REVPAAPKPAPRQGARETRPP---PPPTQASHSGAGQTREKGARSPRLGNRGLSRAGSPL 77
+ VP+ P PAP++ RE RPP P + S + + + S + S + S
Sbjct: 2577 KRVPS-PTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2635
Query: 78 SRDSGRLLSALALPREAATG 97
S S S+ + P A G
Sbjct: 2636 SSSSSSSSSSSSSPSPAKPG 2655
Score = 28.9 bits (63), Expect = 1.7
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
Query: 5 RSAGDAGSHLRAQRLGREVPAAPKPAPRQGARETRPP----PPPTQASHSGAGQ------ 54
RS+ + R R R ++P+ R R R P P P + S S +
Sbjct: 1692 RSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSP 1751
Query: 55 ---TREKGARSPRLGNRGLSRAGSPLSRDSGR 83
T + RSP RGL R+ S R+ R
Sbjct: 1752 RTKTTSRRGRSPSPKPRGLQRSRSRSRREKTR 1783
Score = 28.5 bits (62), Expect = 2.2
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 29 PAPRQGARE-TRPPPPPTQASHSGAGQTREKGARSPRLGNRGLSRAGSPLSRDSGRL 84
P +G R TR PP + S SG+ R + A P N SR P++ +S R+
Sbjct: 2059 PRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRT-PPVALNSSRM 2114
Score = 26.9 bits (58), Expect = 6.5
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 15 RAQRLGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREKGARSPRLGNRGLSRAG 74
R R G P A P + +R + PPP Q S + + Q+ + P++ + R G
Sbjct: 795 RRSRSGSSQPKAKSRTPPRRSRSSSSPPPK-QKSKTPSRQSHSSSSPHPKVKSGTPPRQG 853
Query: 75 S 75
S
Sbjct: 854 S 854
Score = 26.6 bits (57), Expect = 8.5
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 14/92 (15%)
Query: 4 KRSAGDAGSHLRA------------QRLGREVPAAPKPAPRQGARETRPPPPPTQASHSG 51
+R G +G H R+ +R GR P + ++ T P P S +
Sbjct: 1812 RRRRGGSGYHSRSPARQESSRTSSRRRRGRS--RTPPTSRKRSRSRTSPAPWKRSRSRAS 1869
Query: 52 AGQTREKGARSPRLGNRGLSRAGSPLSRDSGR 83
R +R+P + R SP+SR R
Sbjct: 1870 PATHRRSRSRTPLISRRRSRSRTSPVSRRRSR 1901
>gi|239753576 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 35.0 bits (79), Expect = 0.024
Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 11/106 (10%)
Query: 3 PKRSAGDAGSHLRAQRLGREVPAAPKPAPRQG-------ARETRPPPPPTQASHSGAGQT 55
P G LR ++L V A P P +G R PPP A+ G +
Sbjct: 253 PPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPAAVPAAWEGTDRR 312
Query: 56 REKGARSP--RLGNRGLSRAG--SPLSRDSGRLLSALALPREAATG 97
R + R P R G G ++AG + AL LP EAA G
Sbjct: 313 RGRRRRRPSGRNGTEGSTKAGWLGTATLACSLPPHALLLPSEAARG 358
>gi|239748084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 35.0 bits (79), Expect = 0.024
Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 11/106 (10%)
Query: 3 PKRSAGDAGSHLRAQRLGREVPAAPKPAPRQG-------ARETRPPPPPTQASHSGAGQT 55
P G LR ++L V A P P +G R PPP A+ G +
Sbjct: 253 PPGCGGSGARGLRPEQLWSHVQHARCPQPGRGPDASGAAGRSRAPPPAAVPAAWEGTDRR 312
Query: 56 REKGARSP--RLGNRGLSRAG--SPLSRDSGRLLSALALPREAATG 97
R + R P R G G ++AG + AL LP EAA G
Sbjct: 313 RGRRRRRPSGRNGTEGSTKAGWLGTATLACSLPPHALLLPSEAARG 358
>gi|189491742 ataxin 7 isoform b [Homo sapiens]
Length = 945
Score = 35.0 bits (79), Expect = 0.024
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 3 PKRSAGDAG-SHLRAQRLGREVPAAPKPAPRQGARETRPPPPP--TQASHSGAGQTREKG 59
P+R+A AG + A R ++ +P P Q R+ PPPPP T+ G G
Sbjct: 13 PRRAAAAAGGAAAAAARQQQQQQQQQQPPPPQPQRQQHPPPPPRRTRPEDGGPGAASTSA 72
Query: 60 ARSPRLGNR 68
A +G R
Sbjct: 73 AAMATVGER 81
>gi|4506797 ataxin 7 isoform a [Homo sapiens]
Length = 892
Score = 35.0 bits (79), Expect = 0.024
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 3 PKRSAGDAG-SHLRAQRLGREVPAAPKPAPRQGARETRPPPPP--TQASHSGAGQTREKG 59
P+R+A AG + A R ++ +P P Q R+ PPPPP T+ G G
Sbjct: 13 PRRAAAAAGGAAAAAARQQQQQQQQQQPPPPQPQRQQHPPPPPRRTRPEDGGPGAASTSA 72
Query: 60 ARSPRLGNR 68
A +G R
Sbjct: 73 AAMATVGER 81
>gi|239756833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 281
Score = 34.7 bits (78), Expect = 0.031
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 15 RAQRLGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREKGARSPRL-----GNRG 69
R Q LGRE P A R GA + +P PP SH+ + A SP L G +G
Sbjct: 189 RHQVLGREAPEAVLLVLRPGAAQQQPQQPPRHPSHA------RRAAGSPELSWLPRGRKG 242
Query: 70 L----SRAGSPLSRDSG 82
RA PL +G
Sbjct: 243 TGPGPGRAARPLGLSAG 259
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 34.7 bits (78), Expect = 0.031
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 3 PKRSAGDAGSHLRAQRLGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREKGARS 62
P G R + GR A+ +P R +R RPPP P + S A ++R G
Sbjct: 207 PAPQPGPTAPPARVREPGRAEGASREPRLR--SRAARPPPAPGPGALSRASRSRAAGRPG 264
Query: 63 PRLGNRGLSRAGSPLSRDSGRLLSALALPREAATGR 98
P G G +A +P + G + AL R A R
Sbjct: 265 P--GFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSR 298
>gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo
sapiens]
Length = 346
Score = 34.7 bits (78), Expect = 0.031
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 15 RAQRLGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREKGARSPRL-----GNRG 69
R Q LGRE P A R GA + +P PP SH+ + A SP L G +G
Sbjct: 254 RHQVLGREAPEAVLLVLRPGAAQQQPQQPPRHPSHA------RRAAGSPELSWLPRGRKG 307
Query: 70 L----SRAGSPLSRDSG 82
RA PL +G
Sbjct: 308 TGPGPGRAARPLGLSAG 324
>gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo
sapiens]
Length = 346
Score = 34.7 bits (78), Expect = 0.031
Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 15 RAQRLGREVPAAPKPAPRQGARETRPPPPPTQASHSGAGQTREKGARSPRL-----GNRG 69
R Q LGRE P A R GA + +P PP SH+ + A SP L G +G
Sbjct: 254 RHQVLGREAPEAVLLVLRPGAAQQQPQQPPRHPSHA------RRAAGSPELSWLPRGRKG 307
Query: 70 L----SRAGSPLSRDSG 82
RA PL +G
Sbjct: 308 TGPGPGRAARPLGLSAG 324
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,789,847
Number of Sequences: 37866
Number of extensions: 457970
Number of successful extensions: 6832
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 531
Number of HSP's that attempted gapping in prelim test: 5068
Number of HSP's gapped (non-prelim): 2054
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.