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Search of human proteins with 169208422
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169208422 PREDICTED: hypothetical protein [Homo sapiens]
(100 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169208422 PREDICTED: hypothetical protein [Homo sapiens] 220 2e-58
gi|239745055 PREDICTED: hypothetical protein XP_002343352 [Homo ... 220 2e-58
gi|239753377 PREDICTED: hypothetical protein [Homo sapiens] 33 0.037
gi|239747944 PREDICTED: hypothetical protein XP_002346483 [Homo ... 33 0.037
gi|239741839 PREDICTED: hypothetical protein XP_002342323 [Homo ... 33 0.037
gi|48762934 alpha 2 type I collagen [Homo sapiens] 33 0.063
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 33 0.063
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 33 0.063
gi|169179759 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|239746733 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|169180158 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|239757723 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239752986 PREDICTED: hypothetical protein XP_002345321 [Homo ... 32 0.14
gi|239752210 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239741430 PREDICTED: hypothetical protein XP_002342198 [Homo ... 32 0.14
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 31 0.24
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 30 0.41
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 30 0.41
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 30 0.41
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap... 30 0.54
gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo sap... 30 0.54
gi|239748993 PREDICTED: hypothetical protein XP_002346876 [Homo ... 30 0.54
gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo sap... 30 0.54
gi|239743015 PREDICTED: hypothetical protein XP_002342718 [Homo ... 30 0.54
gi|19557702 surfeit 6 [Homo sapiens] 30 0.54
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 29 0.70
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 29 0.70
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 29 0.70
gi|27436948 lamin A/C isoform 3 [Homo sapiens] 29 0.92
>gi|169208422 PREDICTED: hypothetical protein [Homo sapiens]
Length = 100
Score = 220 bits (561), Expect = 2e-58
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MCPILVKIKKLRNKANPWDAEGTLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGP 60
MCPILVKIKKLRNKANPWDAEGTLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGP
Sbjct: 1 MCPILVKIKKLRNKANPWDAEGTLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGP 60
Query: 61 QWWLPGPWTQGATGFASPLPRKHRRLWGSGGPPALNVDLV 100
QWWLPGPWTQGATGFASPLPRKHRRLWGSGGPPALNVDLV
Sbjct: 61 QWWLPGPWTQGATGFASPLPRKHRRLWGSGGPPALNVDLV 100
>gi|239745055 PREDICTED: hypothetical protein XP_002343352 [Homo
sapiens]
Length = 100
Score = 220 bits (561), Expect = 2e-58
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MCPILVKIKKLRNKANPWDAEGTLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGP 60
MCPILVKIKKLRNKANPWDAEGTLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGP
Sbjct: 1 MCPILVKIKKLRNKANPWDAEGTLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGP 60
Query: 61 QWWLPGPWTQGATGFASPLPRKHRRLWGSGGPPALNVDLV 100
QWWLPGPWTQGATGFASPLPRKHRRLWGSGGPPALNVDLV
Sbjct: 61 QWWLPGPWTQGATGFASPLPRKHRRLWGSGGPPALNVDLV 100
>gi|239753377 PREDICTED: hypothetical protein [Homo sapiens]
Length = 328
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 30 ERSPNTRPGQSPETWSVAASGHPAE--GQAGGPQWWLPGP----------WTQGATGFAS 77
E S +PG + S AA+ H GQ QW GP WTQG+ F+S
Sbjct: 208 ESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQGSGSFSS 267
Query: 78 PLPRKHRRLWGSGGP 92
P + R GS P
Sbjct: 268 P---GNHRFLGSNSP 279
>gi|239747944 PREDICTED: hypothetical protein XP_002346483 [Homo
sapiens]
Length = 328
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 30 ERSPNTRPGQSPETWSVAASGHPAE--GQAGGPQWWLPGP----------WTQGATGFAS 77
E S +PG + S AA+ H GQ QW GP WTQG+ F+S
Sbjct: 208 ESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQGSGSFSS 267
Query: 78 PLPRKHRRLWGSGGP 92
P + R GS P
Sbjct: 268 P---GNHRFLGSNSP 279
>gi|239741839 PREDICTED: hypothetical protein XP_002342323 [Homo
sapiens]
Length = 281
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 30 ERSPNTRPGQSPETWSVAASGHPAE--GQAGGPQWWLPGP----------WTQGATGFAS 77
E S +PG + S AA+ H GQ QW GP WTQG+ F+S
Sbjct: 161 ESSQGKQPGPQQQHPSRAAADHDPGRMGQGAAAQWTPKGPLRRLRLPRCKWTQGSGSFSS 220
Query: 78 PLPRKHRRLWGSGGP 92
P + R GS P
Sbjct: 221 P---GNHRFLGSNSP 232
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 32.7 bits (73), Expect = 0.063
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 28 AGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRLW 87
AG R P PG++ E G P E GPQ P T G GF R H L
Sbjct: 129 AGARGPAGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKG--IRGHNGLD 186
Query: 88 GSGGPP 93
G G P
Sbjct: 187 GLKGQP 192
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 32.7 bits (73), Expect = 0.063
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 18 WDAEG----TLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGAT 73
WD G + + AG R N+ P SV + P GQ G P PGP G
Sbjct: 251 WDHSGGAGDSSRSPAGLRRANSVQASRPAPGSVQSPAPPQPGQPGTPGGSRPGPGPAGRF 310
Query: 74 GFASP----------LPRKHRRLWGSGGPPAL 95
P P + R G GG PA+
Sbjct: 311 PDQKPEVAPSDPGTTAPPREERTGGVGGYPAV 342
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 32.7 bits (73), Expect = 0.063
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 18 WDAEG----TLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGAT 73
WD G + + AG R N+ P SV + P GQ G P PGP G
Sbjct: 247 WDHSGGAGDSSRSPAGLRRANSVQASRPAPGSVQSPAPPQPGQPGTPGGSRPGPGPAGRF 306
Query: 74 GFASP----------LPRKHRRLWGSGGPPAL 95
P P + R G GG PA+
Sbjct: 307 PDQKPEVAPSDPGTTAPPREERTGGVGGYPAV 338
>gi|169179759 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 39 QSPETWSVAA-SGHPAEGQAG--------GPQWWLPGPWTQGATGFASPLPRKHRRLWGS 89
++P+ SV +G P GQ G G W GP +G G+ + P + + +WG+
Sbjct: 54 RAPDAGSVCGGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGA 113
Query: 90 GGP 92
G P
Sbjct: 114 GPP 116
>gi|239746733 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 32.0 bits (71), Expect = 0.11
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 39 QSPETW-----SVAASGHPAEGQAGGP----QWWLPGPWTQGATGFASPLPRKHRRLWGS 89
Q P+ W S+ + G EGQ G P Q LP PW Q S PRK + GS
Sbjct: 55 QPPKPWLQTQASLCSQG--PEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGS 112
Query: 90 GGP 92
GP
Sbjct: 113 QGP 115
>gi|169180158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 39 QSPETWSVAA-SGHPAEGQAG--------GPQWWLPGPWTQGATGFASPLPRKHRRLWGS 89
++P+ SV +G P GQ G G W GP +G G+ + P + + +WG+
Sbjct: 54 RAPDAGSVCGGAGPPMRGQWGWGAGSPMRGQSVWGAGPPMRGQWGWGAGSPMRGQSVWGA 113
Query: 90 GGP 92
G P
Sbjct: 114 GPP 116
>gi|239757723 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 31.6 bits (70), Expect = 0.14
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 39 QSPETW-----SVAASGHPAEGQAGGP----QWWLPGPWTQGATGFASPLPRKHRRLWGS 89
Q P+ W S+ + G EGQ G P Q LP PW Q S PRK + GS
Sbjct: 55 QLPKPWLQTQASLCSQG--PEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGS 112
Query: 90 GGP 92
GP
Sbjct: 113 QGP 115
>gi|239752986 PREDICTED: hypothetical protein XP_002345321 [Homo
sapiens]
Length = 424
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 22 GTLMTSAGERSPNTRPGQSPETWSVAASGHPA-EGQA---GGPQWWLPGPWTQGATGFAS 77
GT + S G RS + P E W + + P GQ+ GP P W G T
Sbjct: 184 GTSLPSVGSRSTSLPP--ESEEWELREAPVPGGRGQSKSPAGPPSAQPRCWLSGHTSQPV 241
Query: 78 PLPRKHRRLW 87
P+P + LW
Sbjct: 242 PVPARRPELW 251
>gi|239752210 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 31.6 bits (70), Expect = 0.14
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 39 QSPETW-----SVAASGHPAEGQAGGP----QWWLPGPWTQGATGFASPLPRKHRRLWGS 89
Q P+ W S+ + G EGQ G P Q LP PW Q S PRK + GS
Sbjct: 55 QLPKPWLQTQASLCSQG--PEGQVGAPPSQAQLQLPKPWLQTQASLHSWGPRKAPLVAGS 112
Query: 90 GGP 92
GP
Sbjct: 113 QGP 115
>gi|239741430 PREDICTED: hypothetical protein XP_002342198 [Homo
sapiens]
Length = 424
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 22 GTLMTSAGERSPNTRPGQSPETWSVAASGHPA-EGQA---GGPQWWLPGPWTQGATGFAS 77
GT + S G RS + P E W + + P GQ+ GP P W G T
Sbjct: 184 GTSLPSVGSRSTSLPP--ESEEWELREAPVPGGRGQSKSPAGPPSAQPRCWLSGHTSQPV 241
Query: 78 PLPRKHRRLW 87
P+P + LW
Sbjct: 242 PVPARRPELW 251
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 30.8 bits (68), Expect = 0.24
Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 29 GERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPW---TQGATGFASPLPRKHRR 85
GER P+ PG + S GH E GP PG T G GF PL +
Sbjct: 569 GERGPDGPPGFPGQPGSHGRDGHAGEKGDPGP----PGDHEDATPGGKGFPGPLGPPGKA 624
Query: 86 LWGSGGPPAL 95
G GPP L
Sbjct: 625 --GPVGPPGL 632
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 29 GERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASP 78
GE+ P +PG + + GHP + G + L P QG G+ P
Sbjct: 724 GEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGP 773
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 14/57 (24%)
Query: 37 PGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRLWGSGGPP 93
PGQ ET +G P G GP QG TG P+ + G GPP
Sbjct: 960 PGQRGETGFQGKTGPPGPGGVVGP---------QGPTGETGPIGER-----GHPGPP 1002
Score = 26.2 bits (56), Expect = 5.9
Identities = 23/67 (34%), Positives = 25/67 (37%), Gaps = 17/67 (25%)
Query: 27 SAGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRL 86
S G R P +PG + G P E GPQ GP QG GF P
Sbjct: 902 SRGARGPTGKPGPKGTSGGDGPPGPPGE---RGPQ----GP--QGPVGFPGPK------- 945
Query: 87 WGSGGPP 93
G GPP
Sbjct: 946 -GPPGPP 951
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 29 GERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASP 78
GE+ P +PG + + GHP + G + L P QG G+ P
Sbjct: 673 GEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGP 722
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 14/57 (24%)
Query: 37 PGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRLWGSGGPP 93
PGQ ET +G P G GP QG TG P+ + G GPP
Sbjct: 909 PGQRGETGFQGKTGPPGPGGVVGP---------QGPTGETGPIGER-----GHPGPP 951
Score = 26.2 bits (56), Expect = 5.9
Identities = 23/67 (34%), Positives = 25/67 (37%), Gaps = 17/67 (25%)
Query: 27 SAGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRL 86
S G R P +PG + G P E GPQ GP QG GF P
Sbjct: 851 SRGARGPTGKPGPKGTSGGDGPPGPPGE---RGPQ----GP--QGPVGFPGPK------- 894
Query: 87 WGSGGPP 93
G GPP
Sbjct: 895 -GPPGPP 900
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 29 GERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASP 78
GE+ P +PG + + GHP + G + L P QG G+ P
Sbjct: 712 GEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGP 761
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 14/57 (24%)
Query: 37 PGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRLWGSGGPP 93
PGQ ET +G P G GP QG TG P+ + G GPP
Sbjct: 948 PGQRGETGFQGKTGPPGPGGVVGP---------QGPTGETGPIGER-----GHPGPP 990
Score = 26.2 bits (56), Expect = 5.9
Identities = 23/67 (34%), Positives = 25/67 (37%), Gaps = 17/67 (25%)
Query: 27 SAGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRL 86
S G R P +PG + G P E GPQ GP QG GF P
Sbjct: 890 SRGARGPTGKPGPKGTSGGDGPPGPPGE---RGPQ----GP--QGPVGFPGPK------- 933
Query: 87 WGSGGPP 93
G GPP
Sbjct: 934 -GPPGPP 939
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 30.0 bits (66), Expect = 0.41
Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 21 EGTLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLP------GPWTQGATG 74
E L + A P PG A+G P G GG + P G GA G
Sbjct: 232 EPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALG 291
Query: 75 FASPLPRKHRRLWGSGG 91
A+P R + WG G
Sbjct: 292 RAAPPSRARQDAWGLSG 308
>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 29.6 bits (65), Expect = 0.54
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 28/79 (35%)
Query: 15 ANPWDAEGTLMTSAGERSP----NTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQ 70
A P AE L AG P T +S TW G GP W PW +
Sbjct: 274 ALPGTAEDALEPEAGPEDPAEAERTLDRRSDGTW----------GTEAGPGW---APWPR 320
Query: 71 GATGFASPLPRKHRRLWGS 89
GA RRLWGS
Sbjct: 321 GA-----------RRLWGS 328
>gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 29.6 bits (65), Expect = 0.54
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 28/79 (35%)
Query: 15 ANPWDAEGTLMTSAGERSP----NTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQ 70
A P AE L AG P T +S TW G GP W PW +
Sbjct: 274 ALPGTAEDALEPEAGPEDPAEAERTLDRRSDGTW----------GTEAGPGW---APWPR 320
Query: 71 GATGFASPLPRKHRRLWGS 89
GA RRLWGS
Sbjct: 321 GA-----------RRLWGS 328
>gi|239748993 PREDICTED: hypothetical protein XP_002346876 [Homo
sapiens]
Length = 552
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 30 ERSPNTRPGQSPETWSVAASGHPAEGQA----GGPQWWLPGPWTQGATGFASPLPRKHRR 85
E P+ PE W EG P W PGP G + P H+
Sbjct: 285 ETGPSRGQKAQPEGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQA 344
Query: 86 LWGSG 90
W SG
Sbjct: 345 AWLSG 349
>gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 29.6 bits (65), Expect = 0.54
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 28/79 (35%)
Query: 15 ANPWDAEGTLMTSAGERSP----NTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQ 70
A P AE L AG P T +S TW G GP W PW +
Sbjct: 274 ALPGTAEDALEPEAGPEDPAEAERTLDRRSDGTW----------GTEAGPGW---APWPR 320
Query: 71 GATGFASPLPRKHRRLWGS 89
GA RRLWGS
Sbjct: 321 GA-----------RRLWGS 328
>gi|239743015 PREDICTED: hypothetical protein XP_002342718 [Homo
sapiens]
Length = 552
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 30 ERSPNTRPGQSPETWSVAASGHPAEGQA----GGPQWWLPGPWTQGATGFASPLPRKHRR 85
E P+ PE W EG P W PGP G + P H+
Sbjct: 285 ETGPSRGQKAQPEGWPAPLPRRQEEGPHHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQA 344
Query: 86 LWGSG 90
W SG
Sbjct: 345 AWLSG 349
>gi|19557702 surfeit 6 [Homo sapiens]
Length = 361
Score = 29.6 bits (65), Expect = 0.54
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 7 KIKKLRNKANPWDAEGTLMTSAGERSPNTRPGQSPET------WSVAASGHPAEGQAGGP 60
K +K KA A+ S GE+SP + PE W+ +++G+PA+G A P
Sbjct: 54 KFRKREEKAAEHKAK-----SLGEKSPAASGARRPEAAKEEAAWASSSAGNPADGLATEP 108
Query: 61 Q 61
+
Sbjct: 109 E 109
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 29.3 bits (64), Expect = 0.70
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 12 RNKANPWDAEGTLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQG 71
+ +A P A G G + P PG ASG+P G + P G
Sbjct: 374 KGEAGPTGARGP----EGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAG 429
Query: 72 ATGFASPLPRKHRRLWGSGGP 92
A GF P PR G+ GP
Sbjct: 430 APGF--PGPRGPPGPQGATGP 448
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 29 GERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATG 74
G R RPG + V SG P E GP PGP QGA G
Sbjct: 558 GARGLTGRPGDAGPQGKVGPSGAPGEDGRPGP----PGP--QGARG 597
Score = 26.6 bits (57), Expect = 4.5
Identities = 24/66 (36%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 28 AGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRLW 87
AGER PG S G P EG G Q +PG GA G PR R
Sbjct: 650 AGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQ-GVPG--EAGAPGLVG--PRGERGFP 704
Query: 88 GSGGPP 93
G G P
Sbjct: 705 GERGSP 710
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 29.3 bits (64), Expect = 0.70
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 12 RNKANPWDAEGTLMTSAGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQG 71
+ +A P A G G + P PG ASG+P G + P G
Sbjct: 305 KGEAGPTGARGP----EGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAG 360
Query: 72 ATGFASPLPRKHRRLWGSGGP 92
A GF P PR G+ GP
Sbjct: 361 APGF--PGPRGPPGPQGATGP 379
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 29 GERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATG 74
G R RPG + V SG P E GP PGP QGA G
Sbjct: 489 GARGLTGRPGDAGPQGKVGPSGAPGEDGRPGP----PGP--QGARG 528
Score = 26.6 bits (57), Expect = 4.5
Identities = 24/66 (36%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 28 AGERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRLW 87
AGER PG S G P EG G Q +PG GA G PR R
Sbjct: 581 AGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQ-GVPG--EAGAPGLVG--PRGERGFP 635
Query: 88 GSGGPP 93
G G P
Sbjct: 636 GERGSP 641
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 29 GERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPGPWTQGATGFASPLPRKHRRLWG 88
G+ P G V A+G P E GP + P G+ G P +K R G
Sbjct: 986 GDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSR--G 1043
Query: 89 SGGPP 93
GPP
Sbjct: 1044 ERGPP 1048
Score = 26.2 bits (56), Expect = 5.9
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 29 GERSPNTRPGQSPETWSVAASGHPAEGQAGGPQWWLPG----PWTQGATGFASPL-PRKH 83
G P + GQ+ E ++G +G+ G P LPG P +G+ GF PL P
Sbjct: 761 GPEGPKGQAGQAGEEGPPGSAGE--KGKLGVPG--LPGYPGRPGPKGSIGFPGPLGPIGE 816
Query: 84 RRLWGSGGPPAL 95
+ G G P L
Sbjct: 817 KGKSGKTGQPGL 828
>gi|27436948 lamin A/C isoform 3 [Homo sapiens]
Length = 634
Score = 28.9 bits (63), Expect = 0.92
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 16 NPWDAEGTLMT----SAGERSPNTRPGQSPE------TWSVAASGHPAE-GQAGGPQWWL 64
N W +L T S GE S + G E T G PA+ A G +
Sbjct: 518 NTWGCGNSLRTALINSTGEGSHCSSSGDPAEYNLRSRTVLCGTCGQPADKASASGSGAQV 577
Query: 65 PGPWTQGATGFASPLPRKHRRLWGSGG 91
GP + G++ + + R +R + GSGG
Sbjct: 578 GGPISSGSSASSVTVTRSYRSVGGSGG 604
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,691,570
Number of Sequences: 37866
Number of extensions: 336996
Number of successful extensions: 1101
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 1001
Number of HSP's gapped (non-prelim): 191
length of query: 100
length of database: 18,247,518
effective HSP length: 71
effective length of query: 29
effective length of database: 15,559,032
effective search space: 451211928
effective search space used: 451211928
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.