Guide to the Human Genome
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Search of human proteins with 169208196

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169208196 PREDICTED: hypothetical protein [Homo sapiens]
         (150 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169208709 PREDICTED: hypothetical protein [Homo sapiens]           301   2e-82
gi|169208196 PREDICTED: hypothetical protein [Homo sapiens]           301   2e-82
gi|169208967 PREDICTED: hypothetical protein [Homo sapiens]           272   9e-74
gi|7662162 ALEX2 protein [Homo sapiens]                                39   0.001
gi|29540562 ALEX2 protein [Homo sapiens]                               39   0.001
gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo sapi...    39   0.002
gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo sapi...    39   0.002
gi|5174751 Yes-associated protein 1, 65kDa isoform 2 [Homo sapiens]    39   0.002
gi|194306653 Yes-associated protein 1, 65kDa isoform 1 [Homo sap...    39   0.002
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ...    37   0.005
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ...    37   0.005
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]            37   0.005
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa...    37   0.005
gi|194248057 growth associated protein 43 isoform 1 [Homo sapiens]     37   0.006
gi|4503911 growth associated protein 43 isoform 2 [Homo sapiens]       37   0.006
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]               37   0.008
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]               37   0.008
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]               37   0.008
gi|38788260 bromodomain PHD finger transcription factor isoform ...    36   0.011
gi|38788274 bromodomain PHD finger transcription factor isoform ...    36   0.011
gi|4507831 Unc-51-like kinase 1 [Homo sapiens]                         36   0.014
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]          35   0.024
gi|239743293 PREDICTED: mucin 12 [Homo sapiens]                        35   0.024
gi|58761548 tau tubulin kinase 1 [Homo sapiens]                        34   0.041
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       34   0.053
gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo ...    34   0.053
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    34   0.053
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    34   0.053
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    34   0.053
gi|149158690 HLA-B associated transcript-2 [Homo sapiens]              34   0.053

>gi|169208709 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 150

 Score =  301 bits (770), Expect = 2e-82
 Identities = 150/150 (100%), Positives = 150/150 (100%)

Query: 1   MQHRKSCFVKELTRHRQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALA 60
           MQHRKSCFVKELTRHRQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALA
Sbjct: 1   MQHRKSCFVKELTRHRQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALA 60

Query: 61  PSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPG 120
           PSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPG
Sbjct: 61  PSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPG 120

Query: 121 GSDNIPTSSGRGSRRWRRRGRGGGGGVASS 150
           GSDNIPTSSGRGSRRWRRRGRGGGGGVASS
Sbjct: 121 GSDNIPTSSGRGSRRWRRRGRGGGGGVASS 150


>gi|169208196 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 150

 Score =  301 bits (770), Expect = 2e-82
 Identities = 150/150 (100%), Positives = 150/150 (100%)

Query: 1   MQHRKSCFVKELTRHRQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALA 60
           MQHRKSCFVKELTRHRQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALA
Sbjct: 1   MQHRKSCFVKELTRHRQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALA 60

Query: 61  PSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPG 120
           PSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPG
Sbjct: 61  PSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPG 120

Query: 121 GSDNIPTSSGRGSRRWRRRGRGGGGGVASS 150
           GSDNIPTSSGRGSRRWRRRGRGGGGGVASS
Sbjct: 121 GSDNIPTSSGRGSRRWRRRGRGGGGGVASS 150


>gi|169208967 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 200

 Score =  272 bits (695), Expect = 9e-74
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 15  HRQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGL 74
           HRQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGL
Sbjct: 65  HRQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGL 124

Query: 75  TARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGSR 134
           TARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGSR
Sbjct: 125 TARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGSR 184

Query: 135 RWRRRGRGGGGGVASS 150
           RWRRRGRGGGGGVASS
Sbjct: 185 RWRRRGRGGGGGVASS 200


>gi|7662162 ALEX2 protein [Homo sapiens]
          Length = 632

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 29/128 (22%)

Query: 46  AEFSQAALTPEEALAPSSSSPLQAGD-VGLTARSQKAGPSGARSPRSAVETP-------- 96
           AE S+AA+ P   +   +++P +  +  G+ A ++ A   G  SP  A E P        
Sbjct: 170 AETSRAAVPPGTVVPTEAAAPTEVTEGPGVAAPTKVAEAPGVASPTEAAEAPVPATPTGA 229

Query: 97  ------AQSPGRSG---------TASAAAADPDT-----VRSPGGSDNIPTSSGRGSRRW 136
                 A+SPG SG         T++A  A P        ++   +  +P   G+G  R 
Sbjct: 230 AAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGAIPKATSATGAVPKGGGKGVTRS 289

Query: 137 RRRGRGGG 144
           R  G+G G
Sbjct: 290 RNGGKGKG 297


>gi|29540562 ALEX2 protein [Homo sapiens]
          Length = 632

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 29/128 (22%)

Query: 46  AEFSQAALTPEEALAPSSSSPLQAGD-VGLTARSQKAGPSGARSPRSAVETP-------- 96
           AE S+AA+ P   +   +++P +  +  G+ A ++ A   G  SP  A E P        
Sbjct: 170 AETSRAAVPPGTVVPTEAAAPTEVTEGPGVAAPTKVAEAPGVASPTEAAEAPVPATPTGA 229

Query: 97  ------AQSPGRSG---------TASAAAADPDT-----VRSPGGSDNIPTSSGRGSRRW 136
                 A+SPG SG         T++A  A P        ++   +  +P   G+G  R 
Sbjct: 230 AAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGAIPKATSATGAVPKGGGKGVTRS 289

Query: 137 RRRGRGGG 144
           R  G+G G
Sbjct: 290 RNGGKGKG 297


>gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo
           sapiens]
          Length = 681

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 41/155 (26%), Positives = 57/155 (36%), Gaps = 39/155 (25%)

Query: 34  PGRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAV 93
           P   PV LRS + E  +    P + L P   S   +GD   +A S ++GP G RS  +  
Sbjct: 318 PEMTPVSLRSTK-EGPETPPRPRDQLPPHPRSRRYSGDSDSSASSAQSGPLGTRSDDTGT 376

Query: 94  ETPAQSPGRSGTASAAAAD--PDTVRS--------------PGGSD---NIPTSSGR--- 131
               + P R  T    A+   P  +RS              PGG     ++P+ + R   
Sbjct: 377 GPRRERPSRRLTTGTPASPRRPPALRSQSRDRLDRGRPRGAPGGRGAQLSVPSPARRARS 436

Query: 132 ----------------GSRRWRRRGRGGGGGVASS 150
                           G   W  RGRG GG   S+
Sbjct: 437 QSREEQAVLLVRRDRDGQHSWVPRGRGSGGSGRST 471


>gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo
           sapiens]
          Length = 681

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 41/155 (26%), Positives = 57/155 (36%), Gaps = 39/155 (25%)

Query: 34  PGRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAV 93
           P   PV LRS + E  +    P + L P   S   +GD   +A S ++GP G RS  +  
Sbjct: 318 PEMTPVSLRSTK-EGPETPPRPRDQLPPHPRSRRYSGDSDSSASSAQSGPLGTRSDDTGT 376

Query: 94  ETPAQSPGRSGTASAAAAD--PDTVRS--------------PGGSD---NIPTSSGR--- 131
               + P R  T    A+   P  +RS              PGG     ++P+ + R   
Sbjct: 377 GPRRERPSRRLTTGTPASPRRPPALRSQSRDRLDRGRPRGAPGGRGAQLSVPSPARRARS 436

Query: 132 ----------------GSRRWRRRGRGGGGGVASS 150
                           G   W  RGRG GG   S+
Sbjct: 437 QSREEQAVLLVRRDRDGQHSWVPRGRGSGGSGRST 471


>gi|5174751 Yes-associated protein 1, 65kDa isoform 2 [Homo sapiens]
          Length = 454

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 33/106 (31%), Positives = 44/106 (41%), Gaps = 17/106 (16%)

Query: 33  LPGRF--PVQLRSHRAEFSQ-----AALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSG 85
           LP  F  P + +SH  + S       ALTP+   A SS + LQ G V            G
Sbjct: 91  LPDSFFKPPEPKSHSRQASTDAGTAGALTPQHVRAHSSPASLQLGAVS----------PG 140

Query: 86  ARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGR 131
             +P   V  PA +P       ++   PD V  P G +   TSSG+
Sbjct: 141 TLTPTGVVSGPAATPTAQHLRQSSFEIPDDVPLPAGWEMAKTSSGQ 186


>gi|194306653 Yes-associated protein 1, 65kDa isoform 1 [Homo
           sapiens]
          Length = 504

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 33/106 (31%), Positives = 44/106 (41%), Gaps = 17/106 (16%)

Query: 33  LPGRF--PVQLRSHRAEFSQ-----AALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSG 85
           LP  F  P + +SH  + S       ALTP+   A SS + LQ G V            G
Sbjct: 91  LPDSFFKPPEPKSHSRQASTDAGTAGALTPQHVRAHSSPASLQLGAVS----------PG 140

Query: 86  ARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGR 131
             +P   V  PA +P       ++   PD V  P G +   TSSG+
Sbjct: 141 TLTPTGVVSGPAATPTAQHLRQSSFEIPDDVPLPAGWEMAKTSSGQ 186


>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
           sapiens]
          Length = 384

 Score = 37.4 bits (85), Expect = 0.005
 Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 22  RHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKA 81
           +H+    ++   PG  P    S RA  + AA       AP  ++   +G  G  +R Q +
Sbjct: 112 QHQSGSRLRPAAPGPRP-GCSSARASPAPAAPQAAARTAPGRAA---SGGSGPGSRGQGS 167

Query: 82  GPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGSRRWRRRGR 141
              GAR  R+  + P  +  R   A   +A P   R PG        SG G+R     G 
Sbjct: 168 DQVGARPSRAGGQPPPLTCRRCRAAPRRSARP--FRRPGLPLKSRPGSGTGARSCGTWGS 225

Query: 142 GGGGGVASS 150
           GGG G A++
Sbjct: 226 GGGPGTAAA 234


>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
           sapiens]
          Length = 384

 Score = 37.4 bits (85), Expect = 0.005
 Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 22  RHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKA 81
           +H+    ++   PG  P    S RA  + AA       AP  ++   +G  G  +R Q +
Sbjct: 112 QHQSGSRLRPAAPGPRP-GCSSARASPAPAAPQAAARTAPGRAA---SGGSGPGSRGQGS 167

Query: 82  GPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGSRRWRRRGR 141
              GAR  R+  + P  +  R   A   +A P   R PG        SG G+R     G 
Sbjct: 168 DQVGARPSRAGGQPPPLTCRRCRAAPRRSARP--FRRPGLPLKSRPGSGTGARSCGTWGS 225

Query: 142 GGGGGVASS 150
           GGG G A++
Sbjct: 226 GGGPGTAAA 234


>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 384

 Score = 37.4 bits (85), Expect = 0.005
 Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 22  RHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKA 81
           +H+    ++   PG  P    S RA  + AA       AP  ++   +G  G  +R Q +
Sbjct: 112 QHQSGSRLRPAAPGPRP-GCSSARASPAPAAPQAAARTAPGRAA---SGGSGPGSRGQGS 167

Query: 82  GPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGSRRWRRRGR 141
              GAR  R+  + P  +  R   A   +A P   R PG        SG G+R     G 
Sbjct: 168 DQVGARPSRAGGQPPPLTCRRCRAAPRRSARP--FRRPGLPLKSRPGSGTGARSCGTWGS 225

Query: 142 GGGGGVASS 150
           GGG G A++
Sbjct: 226 GGGPGTAAA 234


>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
           sapiens]
          Length = 601

 Score = 37.4 bits (85), Expect = 0.005
 Identities = 23/77 (29%), Positives = 31/77 (40%)

Query: 73  GLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRG 132
           GLT       P  A+ P +A  +   +P  +   S   A P T   P  S +  + +G G
Sbjct: 75  GLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPSTSGSASSDAGSG 134

Query: 133 SRRWRRRGRGGGGGVAS 149
           SRR    G   G G  S
Sbjct: 135 SRRSSGGGPSPGAGEGS 151



 Score = 29.3 bits (64), Expect = 1.3
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 19  TLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARS 78
           TL +H +   +   L  + P + +   A  + +  TP+ A APS++    A     +   
Sbjct: 66  TLNQHGIKDGLTVHLVIKTPQKAQDPAAATASSPSTPDPASAPSTTPASPATPAQPSTSG 125

Query: 79  QKAGPSGARSPRSAVETPAQSPGRSGTASAAAA 111
             +  +G+ S RS+   P+   G  G+ SA A+
Sbjct: 126 SASSDAGSGSRRSSGGGPSPGAG-EGSPSATAS 157


>gi|194248057 growth associated protein 43 isoform 1 [Homo sapiens]
          Length = 274

 Score = 37.0 bits (84), Expect = 0.006
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 54  TPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADP 113
           T  EA   + S P + G  G T   +K G   A + ++A + PA S  ++G+A   +A  
Sbjct: 122 TTAEAAPATGSKPDEPGKAGETPSEEKKGEGDAATEQAAPQAPASSEEKAGSAETESA-- 179

Query: 114 DTVRSPGGSDNIPTS 128
               +   +DN P+S
Sbjct: 180 ----TKASTDNSPSS 190


>gi|4503911 growth associated protein 43 isoform 2 [Homo sapiens]
          Length = 238

 Score = 37.0 bits (84), Expect = 0.006
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 54  TPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADP 113
           T  EA   + S P + G  G T   +K G   A + ++A + PA S  ++G+A   +A  
Sbjct: 86  TTAEAAPATGSKPDEPGKAGETPSEEKKGEGDAATEQAAPQAPASSEEKAGSAETESA-- 143

Query: 114 DTVRSPGGSDNIPTS 128
               +   +DN P+S
Sbjct: 144 ----TKASTDNSPSS 154


>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
          Length = 558

 Score = 36.6 bits (83), Expect = 0.008
 Identities = 32/102 (31%), Positives = 40/102 (39%), Gaps = 13/102 (12%)

Query: 51  AALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQS------PGRSG 104
           A + P + + P       A   G T  +  A      SP  ++  PA S      P    
Sbjct: 6   ALIPPTQLVPPQPPISTSASSSGTTTSTSSA----TSSPAPSIGPPASSGPTLFRPEPIA 61

Query: 105 TASAAAADPDTVRSPGGSDNIPTSSGRGSRRWRRRGRGGGGG 146
           +A+AAAA   TV S GG      S G G       G GGGGG
Sbjct: 62  SAAAAAA---TVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGG 100


>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
          Length = 706

 Score = 36.6 bits (83), Expect = 0.008
 Identities = 32/102 (31%), Positives = 40/102 (39%), Gaps = 13/102 (12%)

Query: 51  AALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQS------PGRSG 104
           A + P + + P       A   G T  +  A      SP  ++  PA S      P    
Sbjct: 6   ALIPPTQLVPPQPPISTSASSSGTTTSTSSA----TSSPAPSIGPPASSGPTLFRPEPIA 61

Query: 105 TASAAAADPDTVRSPGGSDNIPTSSGRGSRRWRRRGRGGGGG 146
           +A+AAAA   TV S GG      S G G       G GGGGG
Sbjct: 62  SAAAAAA---TVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGG 100


>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
          Length = 504

 Score = 36.6 bits (83), Expect = 0.008
 Identities = 32/102 (31%), Positives = 40/102 (39%), Gaps = 13/102 (12%)

Query: 51  AALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQS------PGRSG 104
           A + P + + P       A   G T  +  A      SP  ++  PA S      P    
Sbjct: 6   ALIPPTQLVPPQPPISTSASSSGTTTSTSSA----TSSPAPSIGPPASSGPTLFRPEPIA 61

Query: 105 TASAAAADPDTVRSPGGSDNIPTSSGRGSRRWRRRGRGGGGG 146
           +A+AAAA   TV S GG      S G G       G GGGGG
Sbjct: 62  SAAAAAA---TVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGG 100


>gi|38788260 bromodomain PHD finger transcription factor isoform 2
           [Homo sapiens]
          Length = 2903

 Score = 36.2 bits (82), Expect = 0.011
 Identities = 36/114 (31%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 35  GRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVE 94
           GR P Q  +  AE  + A  P     P +S P+  G +    R    G   A     A +
Sbjct: 6   GRPPKQPAAPAAE--RCAPAPPPPPPPPTSGPI--GGLRSRHRGSSRGRWAAAQAEVAPK 61

Query: 95  TPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGSRRWRRRGRGGGGGVA 148
           T   SP R G++S     P     P  S + P   GRG    R  G GGGG +A
Sbjct: 62  TRLSSP-RGGSSSRRKPPPPPPAPP--STSAPGRGGRGGGGGRTGGGGGGGHLA 112


>gi|38788274 bromodomain PHD finger transcription factor isoform 1
           [Homo sapiens]
          Length = 2920

 Score = 36.2 bits (82), Expect = 0.011
 Identities = 36/114 (31%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 35  GRFPVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVE 94
           GR P Q  +  AE  + A  P     P +S P+  G +    R    G   A     A +
Sbjct: 6   GRPPKQPAAPAAE--RCAPAPPPPPPPPTSGPI--GGLRSRHRGSSRGRWAAAQAEVAPK 61

Query: 95  TPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRGSRRWRRRGRGGGGGVA 148
           T   SP R G++S     P     P  S + P   GRG    R  G GGGG +A
Sbjct: 62  TRLSSP-RGGSSSRRKPPPPPPAPP--STSAPGRGGRGGGGGRTGGGGGGGHLA 112


>gi|4507831 Unc-51-like kinase 1 [Homo sapiens]
          Length = 1050

 Score = 35.8 bits (81), Expect = 0.014
 Identities = 25/72 (34%), Positives = 30/72 (41%)

Query: 62  SSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPGG 121
           S S P  A   G+ AR    G     +P   V T  + PG SGT S   A+    RSP  
Sbjct: 477 SPSPPAHAEHGGVLARKMSLGGGRPYTPSPQVGTIPERPGWSGTPSPQGAEMRGGRSPRP 536

Query: 122 SDNIPTSSGRGS 133
             + P  S R S
Sbjct: 537 GSSAPEHSPRTS 548


>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
          Length = 715

 Score = 35.0 bits (79), Expect = 0.024
 Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 16/128 (12%)

Query: 38  PVQLRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPA 97
           P  L+S ++     +L P +     +S    +      + S K  PS   S RS V + A
Sbjct: 29  PASLKSTKSATPNRSLVPTKPATSRNSVMSPSSSKSTKSTSTKRAPSNRPSSRSRVRSKA 88

Query: 98  QSPGR--SGTASAAAADPDTV------------RSPG--GSDNIPTSSGRGSRRWRRRGR 141
           ++P R  + T ++ A+    V            R+PG  GS +   S  R S   R R  
Sbjct: 89  RTPSRVSTDTRTSKASKASDVRCHQRRGTHSRGRTPGRRGSRSSKRSPSRASTPGRIRTH 148

Query: 142 GGGGGVAS 149
           G   G+AS
Sbjct: 149 GARPGMAS 156


>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
          Length = 5478

 Score = 35.0 bits (79), Expect = 0.024
 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 31   TILPGRFPVQ-LRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSP 89
            T LPG      L      F  +  +P   L+P+S + L  G+   T+RSQ        SP
Sbjct: 2312 TTLPGSTTTPGLSEASTTFYSSPRSPTTTLSPASMTSLGVGEESTTSRSQPGSTHSTVSP 2371

Query: 90   RSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRG 132
             S   TP  S   +   S++    +T   P      PT+S RG
Sbjct: 2372 ASTT-TPGLSEESTTVYSSSPGSTETTVFP----RTPTTSVRG 2409



 Score = 32.3 bits (72), Expect = 0.15
 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 31   TILPGRFPVQ-LRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSP 89
            T LPG      L      F  +  +P   L+P+S + L  G+   T+RSQ        SP
Sbjct: 2786 TTLPGSTTTPGLSEASTTFYSSPRSPTTTLSPASMTSLGVGEESTTSRSQPGSTHSTVSP 2845

Query: 90   RSAVETPAQSPGRSGTASAAAADPDTVRSPGGSDNIPTSSGRG 132
             S   TP  S   +   S++    +T   P  +    T+S RG
Sbjct: 2846 ASTT-TPGLSEESTTVYSSSPGSTETTVFPRST----TTSVRG 2883



 Score = 31.6 bits (70), Expect = 0.26
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 31   TILPGRFPVQ-LRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSP 89
            T LPG      L      F  +  +P   L+P+S + L  G+   T+RSQ        SP
Sbjct: 1229 TTLPGSTTTPGLSEASTTFYSSPRSPTTTLSPASMTSLGVGEESTTSRSQPGSTHSTVSP 1288

Query: 90   RSAVETPAQSPGRSGTASAAAADPDTVRSP 119
             S   TP  S   +   S++    +T   P
Sbjct: 1289 ASTT-TPGLSEESTTVYSSSRGSTETTVFP 1317



 Score = 31.6 bits (70), Expect = 0.26
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 31   TILPGRFPVQ-LRSHRAEFSQAALTPEEALAPSSSSPLQAGDVGLTARSQKAGPSGARSP 89
            T LPG      L      F  +  +P   L+P+S + L  G+   T+RSQ        SP
Sbjct: 3869 TTLPGSTTTPGLSEASTTFYSSPRSPTTTLSPASMTSLGVGEESTTSRSQPGSTHSTVSP 3928

Query: 90   RSAVETPAQSPGRSGTASAAAADPDTVRSP 119
             S   TP  S   +   S++    +T   P
Sbjct: 3929 ASTT-TPGLSEESTTVYSSSPGSTETTVFP 3957


>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
          Length = 1321

 Score = 34.3 bits (77), Expect = 0.041
 Identities = 44/155 (28%), Positives = 61/155 (39%), Gaps = 25/155 (16%)

Query: 16   RQVTLQRHEMHPEIQTILPGRFPVQLRSHRAEFSQAALTPEE----ALAPSSSSPLQAGD 71
            +Q   + H   P + T +  R  +QL++     + A L P++     L P  +   QAG 
Sbjct: 1171 QQPASRSHGAAPALDTAITSR--LQLQTPPGSATAADLRPKQPPGRGLGPGRA---QAGA 1225

Query: 72   VGLTARSQK--AGPSGAR----SPRSAVETPAQSPGRSGTASA----------AAADPDT 115
                 RS +  A  S AR    SPRS   +  +SP  S  A            A A PD 
Sbjct: 1226 RPPAPRSPRLPASTSAARNASASPRSQSLSRRESPSPSHQARPGVPPPRGVPPARAQPDG 1285

Query: 116  VRSPGGSDNIPTSSGRGSRRWRRRGRGGGGGVASS 150
              SPGGS   P    +  R   +   GG  G A +
Sbjct: 1286 TPSPGGSKKGPRGKLQAQRATTKGRAGGAEGRAGA 1320


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 33.9 bits (76), Expect = 0.053
 Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 16/82 (19%)

Query: 68  QAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPG------- 120
           Q GD G+     +AGP G   P   ++ P   PG  G       DP TV  PG       
Sbjct: 466 QPGDPGVPGFKGEAGPKGEPGPH-GIQGPIGPPGEEG-KRGPRGDPGTVGPPGPVGERGA 523

Query: 121 -------GSDNIPTSSGRGSRR 135
                  GSD +P   G    R
Sbjct: 524 PGNRGFPGSDGLPGPKGAQGER 545



 Score = 28.1 bits (61), Expect = 2.9
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 16/70 (22%)

Query: 66  PLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSPG----- 120
           P  +G  G      +AGP+GAR P    E P    G +G        P  V SPG     
Sbjct: 374 PGSSGFPGNPGMKGEAGPTGARGP----EGPQGQRGETG-------PPGPVGSPGLPGAI 422

Query: 121 GSDNIPTSSG 130
           G+D  P + G
Sbjct: 423 GTDGTPGAKG 432


>gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo
           sapiens]
          Length = 537

 Score = 33.9 bits (76), Expect = 0.053
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 12/76 (15%)

Query: 83  PSGARSPRSAVETPAQSPGRSGTASAA--------AADPDTVRSPGGSDNIPTSSGRGSR 134
           P  AR+PR  +    +   R+ TA  +        A D   V   G +   P    RG  
Sbjct: 152 PPAARTPRDGLRDRGRLLSRNSTARRSFLELKEVDAVDEQDVVREGEAPTPP----RGKT 207

Query: 135 RWRRRGRGGGGGVASS 150
            +RR+GRGGGG  A S
Sbjct: 208 SFRRQGRGGGGARAIS 223


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
           [Homo sapiens]
          Length = 1650

 Score = 33.9 bits (76), Expect = 0.053
 Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 68  QAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAA-----DPDTVRSPGGS 122
           Q G  GL   S   GP G R P+     P ++ GR G A A  A     DP  V+   G 
Sbjct: 417 QPGSPGLKGESGDLGPQGPRGPQGLTGPPGKA-GRRGRAGADGARGMPGDPG-VKGDRGF 474

Query: 123 DNIPTSSGRGSRR 135
           D +P   G    R
Sbjct: 475 DGLPGLPGEKGHR 487



 Score = 30.0 bits (66), Expect = 0.76
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 9/57 (15%)

Query: 66   PLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGT--ASAAAADPDTVRSPG 120
            P Q G  G T  +   GP G R        PA SPG  G      A  DP  + +PG
Sbjct: 1213 PGQPGSPGPTGENGPPGPLGKRG-------PAGSPGSEGRQGGKGAKGDPGAIGAPG 1262



 Score = 28.9 bits (63), Expect = 1.7
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 66  PLQAGDVGLTARSQKAGPSGARSPRS--AVETPAQSPGRSGTASAAAADPDTVRSPGGSD 123
           P  +G+ G    S K+GP G R P        P  + G+SG    +  D      P G  
Sbjct: 733 PGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGP--HGPPGER 790

Query: 124 NIPTSSG 130
            +P   G
Sbjct: 791 GLPGPQG 797


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
           [Homo sapiens]
          Length = 1629

 Score = 33.9 bits (76), Expect = 0.053
 Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 68  QAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAA-----DPDTVRSPGGS 122
           Q G  GL   S   GP G R P+     P ++ GR G A A  A     DP  V+   G 
Sbjct: 396 QPGSPGLKGESGDLGPQGPRGPQGLTGPPGKA-GRRGRAGADGARGMPGDPG-VKGDRGF 453

Query: 123 DNIPTSSGRGSRR 135
           D +P   G    R
Sbjct: 454 DGLPGLPGEKGHR 466



 Score = 30.0 bits (66), Expect = 0.76
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 9/57 (15%)

Query: 66   PLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGT--ASAAAADPDTVRSPG 120
            P Q G  G T  +   GP G R        PA SPG  G      A  DP  + +PG
Sbjct: 1192 PGQPGSPGPTGENGPPGPLGKRG-------PAGSPGSEGRQGGKGAKGDPGAIGAPG 1241



 Score = 28.9 bits (63), Expect = 1.7
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 66  PLQAGDVGLTARSQKAGPSGARSPRS--AVETPAQSPGRSGTASAAAADPDTVRSPGGSD 123
           P  +G+ G    S K+GP G R P        P  + G+SG    +  D      P G  
Sbjct: 712 PGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGP--HGPPGER 769

Query: 124 NIPTSSG 130
            +P   G
Sbjct: 770 GLPGPQG 776


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
           [Homo sapiens]
          Length = 1736

 Score = 33.9 bits (76), Expect = 0.053
 Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 68  QAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAA-----DPDTVRSPGGS 122
           Q G  GL   S   GP G R P+     P ++ GR G A A  A     DP  V+   G 
Sbjct: 503 QPGSPGLKGESGDLGPQGPRGPQGLTGPPGKA-GRRGRAGADGARGMPGDPG-VKGDRGF 560

Query: 123 DNIPTSSGRGSRR 135
           D +P   G    R
Sbjct: 561 DGLPGLPGEKGHR 573



 Score = 30.0 bits (66), Expect = 0.76
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 9/57 (15%)

Query: 66   PLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGT--ASAAAADPDTVRSPG 120
            P Q G  G T  +   GP G R        PA SPG  G      A  DP  + +PG
Sbjct: 1299 PGQPGSPGPTGENGPPGPLGKRG-------PAGSPGSEGRQGGKGAKGDPGAIGAPG 1348



 Score = 28.9 bits (63), Expect = 1.7
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 66  PLQAGDVGLTARSQKAGPSGARSPRS--AVETPAQSPGRSGTASAAAADPDTVRSPGGSD 123
           P  +G+ G    S K+GP G R P        P  + G+SG    +  D      P G  
Sbjct: 819 PGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGP--HGPPGER 876

Query: 124 NIPTSSG 130
            +P   G
Sbjct: 877 GLPGPQG 883


>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
          Length = 2157

 Score = 33.9 bits (76), Expect = 0.053
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 60  APSSSSPLQAGDVGLTARSQKAGPSGARSPRSAVETPAQSPGRSGTASAAAADPDTVRSP 119
           APS+ +P  A    L A      P+ A +P +  E PAQ+P    T +   A   T+ S 
Sbjct: 514 APSTPAPPPAVPKELPAPPAPP-PASAPTPETEPEEPAQAPPAQSTPTPGVAAAPTLVSG 572

Query: 120 GGSDNIPTSSG 130
           GGS +  TSSG
Sbjct: 573 GGSTS-STSSG 582


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.126    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,905,190
Number of Sequences: 37866
Number of extensions: 357766
Number of successful extensions: 3734
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 471
Number of HSP's that attempted gapping in prelim test: 2986
Number of HSP's gapped (non-prelim): 1182
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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