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Search of human proteins with 169202578
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169202578 PREDICTED: hypothetical protein [Homo sapiens]
(145 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169203406 PREDICTED: hypothetical protein [Homo sapiens] 302 7e-83
gi|169202578 PREDICTED: hypothetical protein [Homo sapiens] 302 7e-83
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 40 9e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 40 9e-04
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|169204821 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|169205432 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|169204105 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 39 0.002
gi|60460889 Myb protein P42POP [Homo sapiens] 39 0.002
gi|6912458 calcineurin binding protein 1 [Homo sapiens] 39 0.002
gi|124430752 kinesin family member 26B [Homo sapiens] 39 0.002
gi|30181233 leucine-rich repeats and calponin homology (CH) doma... 38 0.003
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 37 0.006
gi|199560536 hypothetical protein LOC283643 isoform 4 [Homo sapi... 36 0.010
gi|199560438 hypothetical protein LOC283643 isoform 2 [Homo sapi... 36 0.010
gi|199560355 hypothetical protein LOC283643 isoform 1 [Homo sapi... 36 0.010
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 36 0.013
gi|117938759 GNAS complex locus XLas [Homo sapiens] 36 0.013
gi|121114296 caudal type homeobox 1 [Homo sapiens] 36 0.013
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 35 0.017
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 35 0.017
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap... 35 0.017
gi|210031154 zinc finger protein 541 [Homo sapiens] 35 0.022
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 35 0.029
gi|209862782 hypothetical protein LOC730130 [Homo sapiens] 35 0.029
gi|171543895 ataxin 2 [Homo sapiens] 34 0.038
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 34 0.038
>gi|169203406 PREDICTED: hypothetical protein [Homo sapiens]
Length = 145
Score = 302 bits (773), Expect = 7e-83
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MVTERTDPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP 60
MVTERTDPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP
Sbjct: 1 MVTERTDPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP 60
Query: 61 AERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSG 120
AERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSG
Sbjct: 61 AERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSG 120
Query: 121 RKDKSGQSGDGRGETRDKTRSERFT 145
RKDKSGQSGDGRGETRDKTRSERFT
Sbjct: 121 RKDKSGQSGDGRGETRDKTRSERFT 145
>gi|169202578 PREDICTED: hypothetical protein [Homo sapiens]
Length = 145
Score = 302 bits (773), Expect = 7e-83
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MVTERTDPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP 60
MVTERTDPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP
Sbjct: 1 MVTERTDPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP 60
Query: 61 AERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSG 120
AERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSG
Sbjct: 61 AERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSG 120
Query: 121 RKDKSGQSGDGRGETRDKTRSERFT 145
RKDKSGQSGDGRGETRDKTRSERFT
Sbjct: 121 RKDKSGQSGDGRGETRDKTRSERFT 145
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 39.7 bits (91), Expect = 9e-04
Identities = 34/103 (33%), Positives = 39/103 (37%), Gaps = 9/103 (8%)
Query: 42 PSQVTSASSKSPFSGHEAPAERGD----GACGPGAGAAAPA---PAAASLPEEPDGGGGP 94
P + + P P ERG G GP P P AS P P G GP
Sbjct: 686 PGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGP 745
Query: 95 DDLLPLPLWLVAEGIFRPQGERRKSGRKDKSGQSG--DGRGET 135
L +P A GI P+G+R G K G G GRG T
Sbjct: 746 PGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLT 788
Score = 33.5 bits (75), Expect = 0.064
Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 56 GHEAPA-ERGD-GACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQ 113
G PA ERG+ GA GP P P P P GG P D +P A G+ P+
Sbjct: 645 GPAGPAGERGEQGAPGPSGFQGLPGP-----PGPPGEGGKPGDQ-GVPGEAGAPGLVGPR 698
Query: 114 GERRKSGRKDKSGQSG 129
GER G + G G
Sbjct: 699 GERGFPGERGSPGAQG 714
Score = 30.4 bits (67), Expect = 0.55
Identities = 26/84 (30%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 50 SKSPFSGHEAPAERGD----GACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLV 105
S P P ERG GA G P PA P P GG G P
Sbjct: 319 SPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPG------FPGAPG 372
Query: 106 AEGIFRPQGERRKSGRKDKSGQSG 129
A+G P G R G + G+ G
Sbjct: 373 AKGEAGPTGARGPEGAQGPRGEPG 396
Score = 29.3 bits (64), Expect = 1.2
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 66 GACGPGAGAAAPAPAAASLPEEPDGGGGP---DDLLPLPLWLVAEGIFRPQGERRKSGRK 122
G GP A PA S P P G GP D +P G P G R +SG
Sbjct: 1143 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIP------GPIGPPGPRGRSGET 1196
Query: 123 DKSGQSGD 130
+G G+
Sbjct: 1197 GPAGPPGN 1204
Score = 27.3 bits (59), Expect = 4.6
Identities = 26/91 (28%), Positives = 32/91 (35%), Gaps = 17/91 (18%)
Query: 40 PRPSQVTSASSKSPFSGHEAPAERGDGACG-PGAGAAAPAPAAASLPEEPDGGGGPDDLL 98
P +Q +P S A A G G PGA +A AP A P P G P
Sbjct: 385 PEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG--- 441
Query: 99 PLPLWLVAEGIFRPQGERRKSGRKDKSGQSG 129
PQG G K ++G+ G
Sbjct: 442 -------------PQGATGPLGPKGQTGEPG 459
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 39.7 bits (91), Expect = 9e-04
Identities = 34/103 (33%), Positives = 39/103 (37%), Gaps = 9/103 (8%)
Query: 42 PSQVTSASSKSPFSGHEAPAERGD----GACGPGAGAAAPA---PAAASLPEEPDGGGGP 94
P + + P P ERG G GP P P AS P P G GP
Sbjct: 617 PGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGP 676
Query: 95 DDLLPLPLWLVAEGIFRPQGERRKSGRKDKSGQSG--DGRGET 135
L +P A GI P+G+R G K G G GRG T
Sbjct: 677 PGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLT 719
Score = 33.5 bits (75), Expect = 0.064
Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 56 GHEAPA-ERGD-GACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQ 113
G PA ERG+ GA GP P P P P GG P D +P A G+ P+
Sbjct: 576 GPAGPAGERGEQGAPGPSGFQGLPGP-----PGPPGEGGKPGDQ-GVPGEAGAPGLVGPR 629
Query: 114 GERRKSGRKDKSGQSG 129
GER G + G G
Sbjct: 630 GERGFPGERGSPGAQG 645
Score = 30.4 bits (67), Expect = 0.55
Identities = 26/84 (30%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 50 SKSPFSGHEAPAERGD----GACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLV 105
S P P ERG GA G P PA P P GG G P
Sbjct: 250 SPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPG------FPGAPG 303
Query: 106 AEGIFRPQGERRKSGRKDKSGQSG 129
A+G P G R G + G+ G
Sbjct: 304 AKGEAGPTGARGPEGAQGPRGEPG 327
Score = 29.3 bits (64), Expect = 1.2
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 66 GACGPGAGAAAPAPAAASLPEEPDGGGGP---DDLLPLPLWLVAEGIFRPQGERRKSGRK 122
G GP A PA S P P G GP D +P G P G R +SG
Sbjct: 1074 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIP------GPIGPPGPRGRSGET 1127
Query: 123 DKSGQSGD 130
+G G+
Sbjct: 1128 GPAGPPGN 1135
Score = 27.3 bits (59), Expect = 4.6
Identities = 26/91 (28%), Positives = 32/91 (35%), Gaps = 17/91 (18%)
Query: 40 PRPSQVTSASSKSPFSGHEAPAERGDGACG-PGAGAAAPAPAAASLPEEPDGGGGPDDLL 98
P +Q +P S A A G G PGA +A AP A P P G P
Sbjct: 316 PEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG--- 372
Query: 99 PLPLWLVAEGIFRPQGERRKSGRKDKSGQSG 129
PQG G K ++G+ G
Sbjct: 373 -------------PQGATGPLGPKGQTGEPG 390
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 38.9 bits (89), Expect = 0.002
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 6 TDPKAAGRRPPQLHEAAKKPDPQRKSN--KEAWGTVPRPSQVTSASSKSPFSGHEAPAER 63
T P AG P A P P+++ + + W +PR +A S S A
Sbjct: 197 TPPLPAGSPDPPSPAATAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPAS 256
Query: 64 GDGACGPGAGAAAPAPAAASL 84
G GA G+ AA P PA A L
Sbjct: 257 GSGAAMTGSWAAPPRPAWAGL 277
>gi|169204821 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 38.9 bits (89), Expect = 0.002
Identities = 43/154 (27%), Positives = 58/154 (37%), Gaps = 25/154 (16%)
Query: 8 PKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGDGA 67
PKAAGR +A + P +R + + G ++ + S H A G +
Sbjct: 2 PKAAGR------DAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLAS 55
Query: 68 CGPGA-GAAAPAPAAASLPEEPDGGGG-------PDDLLPLPLWLVA----------EGI 109
PG GA APAPA P P G G PD P P W ++
Sbjct: 56 GRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAA 115
Query: 110 FRPQGERRKSGRKDKSGQSGDGRGETRDKTRSER 143
P G R +D SG + GR RD+ + R
Sbjct: 116 PPPAGSRGLLETQDTSGFASPGR-RPRDRRPARR 148
>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 38.9 bits (89), Expect = 0.002
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 6 TDPKAAGRRPPQLHEAAKKPDPQRKSN--KEAWGTVPRPSQVTSASSKSPFSGHEAPAER 63
T P AG P A P P+++ + + W +PR +A S S A
Sbjct: 197 TPPLPAGSPDPPSPAATAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPAS 256
Query: 64 GDGACGPGAGAAAPAPAAASL 84
G GA G+ AA P PA A L
Sbjct: 257 GSGAAMTGSWAAPPRPAWAGL 277
>gi|169205432 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 38.9 bits (89), Expect = 0.002
Identities = 43/154 (27%), Positives = 58/154 (37%), Gaps = 25/154 (16%)
Query: 8 PKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGDGA 67
PKAAGR +A + P +R + + G ++ + S H A G +
Sbjct: 2 PKAAGR------DAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLAS 55
Query: 68 CGPGA-GAAAPAPAAASLPEEPDGGGG-------PDDLLPLPLWLVA----------EGI 109
PG GA APAPA P P G G PD P P W ++
Sbjct: 56 GRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAA 115
Query: 110 FRPQGERRKSGRKDKSGQSGDGRGETRDKTRSER 143
P G R +D SG + GR RD+ + R
Sbjct: 116 PPPAGSRGLLETQDTSGFASPGR-RPRDRRPARR 148
>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 38.9 bits (89), Expect = 0.002
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 6 TDPKAAGRRPPQLHEAAKKPDPQRKSN--KEAWGTVPRPSQVTSASSKSPFSGHEAPAER 63
T P AG P A P P+++ + + W +PR +A S S A
Sbjct: 197 TPPLPAGSPDPPSPAATAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPAS 256
Query: 64 GDGACGPGAGAAAPAPAAASL 84
G GA G+ AA P PA A L
Sbjct: 257 GSGAAMTGSWAAPPRPAWAGL 277
>gi|169204105 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 38.9 bits (89), Expect = 0.002
Identities = 43/154 (27%), Positives = 58/154 (37%), Gaps = 25/154 (16%)
Query: 8 PKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGDGA 67
PKAAGR +A + P +R + + G ++ + S H A G +
Sbjct: 2 PKAAGR------DAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLAS 55
Query: 68 CGPGA-GAAAPAPAAASLPEEPDGGGG-------PDDLLPLPLWLVA----------EGI 109
PG GA APAPA P P G G PD P P W ++
Sbjct: 56 GRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAA 115
Query: 110 FRPQGERRKSGRKDKSGQSGDGRGETRDKTRSER 143
P G R +D SG + GR RD+ + R
Sbjct: 116 PPPAGSRGLLETQDTSGFASPGR-RPRDRRPARR 148
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 38.9 bits (89), Expect = 0.002
Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 10/135 (7%)
Query: 4 ERTDPKAAGRRPPQLHEAAK-----KPDPQRKSNKE-AWGTVPRPSQVTSASSKSPFSGH 57
ER+ PK A PP L + K P+P+R++ E G P ++ + S +P
Sbjct: 432 ERSVPKEAEPTPPVLPDEEKGPPGPAPEPEREAETEPERGAGTEPERIGTEPSTAPAPSP 491
Query: 58 EAP---AERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQG 114
AP + A G A+ P AA S P EP G G D P AE P
Sbjct: 492 PAPKSCLKHRPAAASEGPAASPPLAAAESPPVEP-GPGSLDAEAAAPERPKAERAEAPPA 550
Query: 115 ERRKSGRKDKSGQSG 129
++ + K+ + G
Sbjct: 551 GAERAAPERKAERGG 565
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 38.5 bits (88), Expect = 0.002
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 20 EAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP--AERGDGACGPGAGAAAP 77
E K+ + ++ KE VP +Q +++ FS E A G G PGAGA A
Sbjct: 75 EVQKRWNDFKRRTKEKLARVPHSTQGAGPAAEDAFSAEEETIFAILGPGVAAPGAGAGAE 134
Query: 78 APAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSGRKDKSGQSGDG 131
P AA + P P ++++E +RR+ R D S S G
Sbjct: 135 EPPAAPSSQPPPPSACPQ------RYVLSE-------DRREDRRADTSAHSKAG 175
>gi|6912458 calcineurin binding protein 1 [Homo sapiens]
Length = 2220
Score = 38.5 bits (88), Expect = 0.002
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 12 GRRPPQLHEAAKKPDPQR--KSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGDGACG 69
G P E +P+P+R ++ + A T P S T+ASSK+P SG P E G
Sbjct: 2061 GAEPTCSQEGKLRPEPRRDGEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPE 2120
Query: 70 PGAGAAAPAP 79
P + P P
Sbjct: 2121 PSRAKSRPLP 2130
>gi|124430752 kinesin family member 26B [Homo sapiens]
Length = 2108
Score = 38.5 bits (88), Expect = 0.002
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 8 PKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGDGA 67
P++ R+ + A +P P+ + A G+ PS + SS S F+G PA G G
Sbjct: 37 PESWYRKAYEESRAGSRPTPEGAGS--ALGSSGTPSPGSGTSSPSSFTGSPGPASPGIGT 94
Query: 68 CGPGAGAAAPAPAAASLPEEPDGGGGP 94
PG+ +P S GG P
Sbjct: 95 SSPGSLGGSPGFGTGSPGSGSGGGSSP 121
>gi|30181233 leucine-rich repeats and calponin homology (CH) domain
containing 4 [Homo sapiens]
Length = 683
Score = 38.1 bits (87), Expect = 0.003
Identities = 41/152 (26%), Positives = 58/152 (38%), Gaps = 22/152 (14%)
Query: 3 TERTDPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQ--------VTSASSKSPF 54
+ R +P RR P + ++ + +++ AWG + S V A++ S
Sbjct: 392 SRREEPAGEERRRPDTLQLWQERERRQQQQSGAWGAPRKDSLLKPGLRAVVGGAAAVSTQ 451
Query: 55 SGHEAPAERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQG 114
+ H + G AG APAPA AS +EP GP P P RP G
Sbjct: 452 AMHNGSPKSSASQAGAAAGQGAPAPAPAS--QEPLPIAGP-ATAPAP---------RPLG 499
Query: 115 --ERRKSGRKDKSGQSGDGRGETRDKTRSERF 144
+R S S QSG G R R+
Sbjct: 500 SIQRPNSFLFRSSSQSGSGPSSPDSVLRPRRY 531
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 37.0 bits (84), Expect = 0.006
Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 14/106 (13%)
Query: 8 PKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASS-------KSPFSGHEAP 60
P+ GR PP A P P ++ + + PS V S S K SG+E
Sbjct: 771 PQYPGRGPPP---APPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETE 827
Query: 61 AERGDGACGPGAGAA----APAPAAASLPEEPDGGGGPDDLLPLPL 102
PG GAA P P A P +P P D PLPL
Sbjct: 828 TPFSPEGAFPGGGAAEEEGVPRPRAPPEPPDPGAPRPPPDPGPLPL 873
Score = 26.9 bits (58), Expect = 6.0
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 7 DPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSG---HEAPAER 63
DP R+ P++ P + ++++ + R S + +PF G P E
Sbjct: 1225 DPPKPERKGPEMPRLFLDLGPPQGNSEQIKARLSRLSLALPPLTLTPFPGPGPRRPPWEG 1284
Query: 64 GD--GACGPGAGAAAPAPAAASLPEEPD 89
D A G GA AP PA +E +
Sbjct: 1285 ADAGAAGGEAGGAGAPGPAEEDGEDEDE 1312
>gi|199560536 hypothetical protein LOC283643 isoform 4 [Homo
sapiens]
Length = 352
Score = 36.2 bits (82), Expect = 0.010
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 66 GACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSGRKDKS 125
G C P AAA P LP P+ GGG DL+ L + E + R ERR++ + K+
Sbjct: 188 GTCAPEVPAAASQPTF--LPWVPERGGGELDLVVRELQALEEEL-REAAERRRAAWEAKA 244
Query: 126 GQSGDG 131
G G G
Sbjct: 245 GGCGRG 250
>gi|199560438 hypothetical protein LOC283643 isoform 2 [Homo
sapiens]
Length = 393
Score = 36.2 bits (82), Expect = 0.010
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 66 GACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSGRKDKS 125
G C P AAA P LP P+ GGG DL+ L + E + R ERR++ + K+
Sbjct: 229 GTCAPEVPAAASQPTF--LPWVPERGGGELDLVVRELQALEEEL-REAAERRRAAWEAKA 285
Query: 126 GQSGDG 131
G G G
Sbjct: 286 GGCGRG 291
>gi|199560355 hypothetical protein LOC283643 isoform 1 [Homo
sapiens]
Length = 426
Score = 36.2 bits (82), Expect = 0.010
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 66 GACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSGRKDKS 125
G C P AAA P LP P+ GGG DL+ L + E + R ERR++ + K+
Sbjct: 262 GTCAPEVPAAASQPTF--LPWVPERGGGELDLVVRELQALEEEL-REAAERRRAAWEAKA 318
Query: 126 GQSGDG 131
G G G
Sbjct: 319 GGCGRG 324
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 35.8 bits (81), Expect = 0.013
Identities = 38/132 (28%), Positives = 47/132 (35%), Gaps = 16/132 (12%)
Query: 15 PPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGD-GACGP-GA 72
P Q + P R + G P V + P G P RGD G GP G
Sbjct: 549 PGQPGMTGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPPGPPGY 608
Query: 73 GAAAPA--------PAAASLPEEPDGGGGPDDLLPLPLWLVAEGI------FRPQGERRK 118
G A P P P P G P ++PLP AEG+ PQG+R
Sbjct: 609 GPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGSPGFPGPQGDRGF 668
Query: 119 SGRKDKSGQSGD 130
G + G G+
Sbjct: 669 PGTPGRPGLPGE 680
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 35.8 bits (81), Expect = 0.013
Identities = 35/122 (28%), Positives = 44/122 (36%), Gaps = 28/122 (22%)
Query: 2 VTERTDPKAAGRRPPQLHEAA------------KKPDPQRKSNKEAWGTVPRPSQVTSAS 49
V+ D + RPP EAA K P P S + ++ A+
Sbjct: 339 VSGAPDKRERAERPPVEEEAAEMEGAADAAEGGKVPSPGYGSPAAGAASADTAARAAPAA 398
Query: 50 SKSPFSGHE--------APAERGDGA--CGPGAGAAAPAPA------AASLPEEPDGGGG 93
P SG APA+ GA P +GAA APA A P +PD G
Sbjct: 399 PADPDSGATPEDPDSGTAPADPDSGAFAADPDSGAAPAAPADPDSGAAPDAPADPDSGAA 458
Query: 94 PD 95
PD
Sbjct: 459 PD 460
Score = 31.6 bits (70), Expect = 0.25
Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 19/96 (19%)
Query: 6 TDPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGD 65
T +AA P A DP GT P + A + P SG APA D
Sbjct: 390 TAARAAPAAPADPDSGATPEDPDS-------GTAPADPD-SGAFAADPDSG-AAPAAPAD 440
Query: 66 GACGPGAGAAAPAP------AAASLPEEPDGGGGPD 95
P +GAA AP AA P +PD G P+
Sbjct: 441 ----PDSGAAPDAPADPDSGAAPDAPADPDAGAAPE 472
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 35.8 bits (81), Expect = 0.013
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 26/148 (17%)
Query: 8 PKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGDGA 67
P + G P A P P + + ++ V P+ + +PF PA + D A
Sbjct: 20 PASLGLGPQAYGPPAPPPAPPQYPDFSSYSHV-EPAPAPPTAWGAPF-----PAPKDDWA 73
Query: 68 CGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPL------WLVAEGIFRP-----QGER 116
G G AAPA + ASL G P D P+P L+A+ + P G +
Sbjct: 74 AAYGPGPAAPAASPASL-----AFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQ 128
Query: 117 RKSG----RKDKSGQSGDGRGETRDKTR 140
R + R+ + G G G+TR K +
Sbjct: 129 RPTPYEWMRRSVAAGGGGGSGKTRTKDK 156
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 35.4 bits (80), Expect = 0.017
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 14/114 (12%)
Query: 43 SQVTSASSKSPFSGHEAPAERGDGACGPGAGAAAPAPAAASLPEEPD--------GGGGP 94
++V+ +KS + P RGDG C G+ A E D G G
Sbjct: 634 AEVSEGKAKSVGEAEDGPEGRGDGTCEEGSSGAEHWQDEEREKGEKDKGRGEMERPGEGE 693
Query: 95 DDLLPLPLWLVAEGIFRPQGERRKSGRKDKS------GQSGDGRGETRDKTRSE 142
+L W +G + Q ER + +K+++ G+ G GE + R E
Sbjct: 694 KELAEKEEWKKRDGEEQEQKEREQGHQKERNQEMEEGGEEEHGEGEEEEGDREE 747
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 35.4 bits (80), Expect = 0.017
Identities = 35/136 (25%), Positives = 48/136 (35%), Gaps = 21/136 (15%)
Query: 16 PQLHEAAKKPDPQRKSNKE--AWGTVPRPSQVTSASSKSPFSGHEAPAERGDGACGPG-- 71
PQ H+ + P P + S+K A G P P ++ + S P GPG
Sbjct: 91 PQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPT 150
Query: 72 -----------AGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGE---RR 117
GA P P ++ +P P GGP P P + G QG
Sbjct: 151 PTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPP---PPPAAVPGPGPGPKQGPGPGGP 207
Query: 118 KSGRKDKSGQSGDGRG 133
K G+ + G G G
Sbjct: 208 KGGKMPGGPKPGGGPG 223
Score = 30.8 bits (68), Expect = 0.42
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 15 PPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP---AERGDGACGPG 71
PP H+ ++P PQ+ ++ P P + P ++ +G G PG
Sbjct: 62 PPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPA-PG 120
Query: 72 AGAAAPAPAAASLPEEPDGGGGPDDLLPLP 101
G+A PA ++A P P G P P P
Sbjct: 121 VGSAPPASSSAP-PATPPTSGAPPGSGPGP 149
Score = 30.4 bits (67), Expect = 0.55
Identities = 24/98 (24%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 1 MVTERTDPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP 60
+V + P P +A P G P P+ + +S P + P
Sbjct: 110 VVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTP 169
Query: 61 AERGDGACGPGAGAAAPAPAA----ASLPEEPDGGGGP 94
G P AG P PAA P++ G GGP
Sbjct: 170 PSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGP 207
>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
sapiens]
Length = 1189
Score = 35.4 bits (80), Expect = 0.017
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 12 GRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQV-TSASSKSP----FSGHEAPA-ERGD 65
GR+PP + +A P PQ + G+ P P + +S SS P GH +P G
Sbjct: 445 GRKPPAFYTSASPPGPQFQ------GSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGS 498
Query: 66 GACGPGAG-AAAPAPAAASLPEEPDGGGGPDD 96
P AG P P + LP P GP +
Sbjct: 499 PGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQN 530
>gi|210031154 zinc finger protein 541 [Homo sapiens]
Length = 1365
Score = 35.0 bits (79), Expect = 0.022
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 40 PRPSQVTSASSKSPFSGHEAPAERGDGACGPGAGAAAPAPAAASLPEEP 88
P P+ ++ S+ + PA G +C P AAPA LPEEP
Sbjct: 290 PGPAPAGASDSEGRNTACPCPASSGSSSCTPAGPHAAPAALDTELPEEP 338
Score = 32.7 bits (73), Expect = 0.11
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 38 TVPRPSQVTSASSKSPFSGHEAPAERGDGAC---GPGA------GAAAPAPAAASLPEE- 87
TVP SQ +S S + + P +G+ P A + P P++ S EE
Sbjct: 401 TVPASSQPSSHSFQWLRNLPGCPKSKGNNVFVVHKPSAVPSREGSESGPGPSSGSPSEES 460
Query: 88 -PDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSGRKD 123
P GGG +D LP P L+ P R SG D
Sbjct: 461 PPGPGGGLEDALPFPAALLRVPAEAPSDPRSASGEDD 497
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 34.7 bits (78), Expect = 0.029
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 11/106 (10%)
Query: 10 AAGRRPPQLHEAAKKP---------DPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP 60
AAG P+ EA P P R ++ A G + + + SG A
Sbjct: 127 AAGADSPKTEEARPSPAPGPGTPTGTPTRTPSRTAPGALTAKPPLAPKPGTTVASGVTAR 186
Query: 61 AERGDGACGPGAGAAAPAPAAASLPEEPDG-GGGPDDLLPLPLWLV 105
+ G G GA AA A +A PE+P G G GP P+ +V
Sbjct: 187 SASGQVTGGHGAAAATSA-SAGQAPEDPSGPGTGPSGTCEAPVAVV 231
Score = 30.8 bits (68), Expect = 0.42
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 15 PPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGDGACGPGAGA 74
PP+ H A P P + ++ V P + ++ +P + AP E A
Sbjct: 11 PPRRHGAPAAPSPPPRGSRAGPVVVVAPGPPVTTATSAPVT-LVAPGEARPAWVPGSAET 69
Query: 75 AAPAPAAASLP 85
+APAPA A P
Sbjct: 70 SAPAPAPAPAP 80
>gi|209862782 hypothetical protein LOC730130 [Homo sapiens]
Length = 380
Score = 34.7 bits (78), Expect = 0.029
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 58 EAPAERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWL 104
E PA RG A PGA + AAA PE P + LP W+
Sbjct: 9 EGPARRGGAARRPGAPGGPGSEAAAGCPEPLSTAEAPAESATLPAWM 55
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 34.3 bits (77), Expect = 0.038
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 37 GTVPRPSQVTSASSKSPFSGHEAPAERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDD 96
G VP PS S SS+ P P A P + P + P P G P
Sbjct: 548 GGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAP 607
Query: 97 LLPLPLWLVAEGIFRPQGERRKSGRKDKSGQSGDGRG 133
+ +P + +EG P K+ R ++ + GRG
Sbjct: 608 VSTMPKRMSSEG---PPRMSPKAQRHPRNHRVSAGRG 641
Score = 26.9 bits (58), Expect = 6.0
Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 22/83 (26%)
Query: 58 EAPAERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERR 117
+ PA R G G G AAP P ++ P P G GP P +
Sbjct: 32 QRPARRS----GRGGGGAAPGPYPSAAPPPP--GPGPP----------------PSRQSS 69
Query: 118 KSGRKDKSGQSGDGRGETRDKTR 140
D G +G+G G R +R
Sbjct: 70 PPSASDCFGSNGNGGGAFRPGSR 92
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 34.3 bits (77), Expect = 0.038
Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 28/148 (18%)
Query: 8 PKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGD-- 65
P+A G P+ E + D + ++ E+ G +Q ++ G EAP G+
Sbjct: 2135 PEAEGEAQPE-SEGVEAQDAEGEAQPESEGI---EAQEAEEEAQPELEGVEAPEAEGEAQ 2190
Query: 66 ----GACGPGA-GAAAPAPAAASLPE-------EPDGGGGPDDLLPLPLWLVAEGIFRPQ 113
G P A G A P PE EP+G P+ AEG +P+
Sbjct: 2191 PESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPE----------AEGEAQPE 2240
Query: 114 GERRKSGRKDKSGQSGDGRGETRDKTRS 141
E G K S Q G G++ + + S
Sbjct: 2241 SEGETQGEKKGSPQVSLGDGQSEEASES 2268
Score = 28.9 bits (63), Expect = 1.6
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 8 PKAAGRRPPQLHEAAKKPDPQRKSNKEAWGT-VPRPSQVTSASSKSPFSGHEAPAER--- 63
P+A G P+L E + P+ + ++ E G P S+ G + + +
Sbjct: 2199 PEAEGEAQPEL-EGVEAPEAEEEAQPEPEGVETPEAEGEAQPESEGETQGEKKGSPQVSL 2257
Query: 64 GDGACGPGAGAAAPAPAAASLPEEPDGGGGP 94
GDG + +++P P P GG P
Sbjct: 2258 GDGQSEEASESSSPVPEDRPTPPPSPGGDTP 2288
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.130 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,884,312
Number of Sequences: 37866
Number of extensions: 524370
Number of successful extensions: 4851
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 535
Number of HSP's that attempted gapping in prelim test: 3808
Number of HSP's gapped (non-prelim): 1456
length of query: 145
length of database: 18,247,518
effective HSP length: 92
effective length of query: 53
effective length of database: 14,763,846
effective search space: 782483838
effective search space used: 782483838
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.