Guide to the Human Genome
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Search of human proteins with 169202578

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169202578 PREDICTED: hypothetical protein [Homo sapiens]
         (145 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169203406 PREDICTED: hypothetical protein [Homo sapiens]           302   7e-83
gi|169202578 PREDICTED: hypothetical protein [Homo sapiens]           302   7e-83
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    40   9e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    40   9e-04
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|169204821 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|169205432 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|169204105 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|116256464 hypothetical protein LOC343990 [Homo sapiens]             39   0.002
gi|60460889 Myb protein P42POP [Homo sapiens]                          39   0.002
gi|6912458 calcineurin binding protein 1 [Homo sapiens]                39   0.002
gi|124430752 kinesin family member 26B [Homo sapiens]                  39   0.002
gi|30181233 leucine-rich repeats and calponin homology (CH) doma...    38   0.003
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]                    37   0.006
gi|199560536 hypothetical protein LOC283643 isoform 4 [Homo sapi...    36   0.010
gi|199560438 hypothetical protein LOC283643 isoform 2 [Homo sapi...    36   0.010
gi|199560355 hypothetical protein LOC283643 isoform 1 [Homo sapi...    36   0.010
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]     36   0.013
gi|117938759 GNAS complex locus XLas [Homo sapiens]                    36   0.013
gi|121114296 caudal type homeobox 1 [Homo sapiens]                     36   0.013
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom...    35   0.017
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    35   0.017
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap...    35   0.017
gi|210031154 zinc finger protein 541 [Homo sapiens]                    35   0.022
gi|167614488 TBC1 domain family, member 10B [Homo sapiens]             35   0.029
gi|209862782 hypothetical protein LOC730130 [Homo sapiens]             35   0.029
gi|171543895 ataxin 2 [Homo sapiens]                                   34   0.038
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]              34   0.038

>gi|169203406 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 145

 Score =  302 bits (773), Expect = 7e-83
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MVTERTDPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP 60
           MVTERTDPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP
Sbjct: 1   MVTERTDPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP 60

Query: 61  AERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSG 120
           AERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSG
Sbjct: 61  AERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSG 120

Query: 121 RKDKSGQSGDGRGETRDKTRSERFT 145
           RKDKSGQSGDGRGETRDKTRSERFT
Sbjct: 121 RKDKSGQSGDGRGETRDKTRSERFT 145


>gi|169202578 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 145

 Score =  302 bits (773), Expect = 7e-83
 Identities = 145/145 (100%), Positives = 145/145 (100%)

Query: 1   MVTERTDPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP 60
           MVTERTDPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP
Sbjct: 1   MVTERTDPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP 60

Query: 61  AERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSG 120
           AERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSG
Sbjct: 61  AERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSG 120

Query: 121 RKDKSGQSGDGRGETRDKTRSERFT 145
           RKDKSGQSGDGRGETRDKTRSERFT
Sbjct: 121 RKDKSGQSGDGRGETRDKTRSERFT 145


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 39.7 bits (91), Expect = 9e-04
 Identities = 34/103 (33%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 42  PSQVTSASSKSPFSGHEAPAERGD----GACGPGAGAAAPA---PAAASLPEEPDGGGGP 94
           P +  +     P      P ERG     G  GP      P    P  AS P  P G  GP
Sbjct: 686 PGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGP 745

Query: 95  DDLLPLPLWLVAEGIFRPQGERRKSGRKDKSGQSG--DGRGET 135
             L  +P    A GI  P+G+R   G K   G  G   GRG T
Sbjct: 746 PGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLT 788



 Score = 33.5 bits (75), Expect = 0.064
 Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 56  GHEAPA-ERGD-GACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQ 113
           G   PA ERG+ GA GP      P P     P  P  GG P D   +P    A G+  P+
Sbjct: 645 GPAGPAGERGEQGAPGPSGFQGLPGP-----PGPPGEGGKPGDQ-GVPGEAGAPGLVGPR 698

Query: 114 GERRKSGRKDKSGQSG 129
           GER   G +   G  G
Sbjct: 699 GERGFPGERGSPGAQG 714



 Score = 30.4 bits (67), Expect = 0.55
 Identities = 26/84 (30%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 50  SKSPFSGHEAPAERGD----GACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLV 105
           S  P      P ERG     GA G       P PA    P  P GG G       P    
Sbjct: 319 SPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPG------FPGAPG 372

Query: 106 AEGIFRPQGERRKSGRKDKSGQSG 129
           A+G   P G R   G +   G+ G
Sbjct: 373 AKGEAGPTGARGPEGAQGPRGEPG 396



 Score = 29.3 bits (64), Expect = 1.2
 Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 9/68 (13%)

Query: 66   GACGPGAGAAAPAPAAASLPEEPDGGGGP---DDLLPLPLWLVAEGIFRPQGERRKSGRK 122
            G  GP     A  PA  S P  P G  GP   D    +P      G   P G R +SG  
Sbjct: 1143 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIP------GPIGPPGPRGRSGET 1196

Query: 123  DKSGQSGD 130
              +G  G+
Sbjct: 1197 GPAGPPGN 1204



 Score = 27.3 bits (59), Expect = 4.6
 Identities = 26/91 (28%), Positives = 32/91 (35%), Gaps = 17/91 (18%)

Query: 40  PRPSQVTSASSKSPFSGHEAPAERGDGACG-PGAGAAAPAPAAASLPEEPDGGGGPDDLL 98
           P  +Q       +P S   A A    G  G PGA  +A AP  A  P  P   G P    
Sbjct: 385 PEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG--- 441

Query: 99  PLPLWLVAEGIFRPQGERRKSGRKDKSGQSG 129
                        PQG     G K ++G+ G
Sbjct: 442 -------------PQGATGPLGPKGQTGEPG 459


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 39.7 bits (91), Expect = 9e-04
 Identities = 34/103 (33%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 42  PSQVTSASSKSPFSGHEAPAERGD----GACGPGAGAAAPA---PAAASLPEEPDGGGGP 94
           P +  +     P      P ERG     G  GP      P    P  AS P  P G  GP
Sbjct: 617 PGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGP 676

Query: 95  DDLLPLPLWLVAEGIFRPQGERRKSGRKDKSGQSG--DGRGET 135
             L  +P    A GI  P+G+R   G K   G  G   GRG T
Sbjct: 677 PGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLT 719



 Score = 33.5 bits (75), Expect = 0.064
 Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 56  GHEAPA-ERGD-GACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQ 113
           G   PA ERG+ GA GP      P P     P  P  GG P D   +P    A G+  P+
Sbjct: 576 GPAGPAGERGEQGAPGPSGFQGLPGP-----PGPPGEGGKPGDQ-GVPGEAGAPGLVGPR 629

Query: 114 GERRKSGRKDKSGQSG 129
           GER   G +   G  G
Sbjct: 630 GERGFPGERGSPGAQG 645



 Score = 30.4 bits (67), Expect = 0.55
 Identities = 26/84 (30%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 50  SKSPFSGHEAPAERGD----GACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLV 105
           S  P      P ERG     GA G       P PA    P  P GG G       P    
Sbjct: 250 SPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPG------FPGAPG 303

Query: 106 AEGIFRPQGERRKSGRKDKSGQSG 129
           A+G   P G R   G +   G+ G
Sbjct: 304 AKGEAGPTGARGPEGAQGPRGEPG 327



 Score = 29.3 bits (64), Expect = 1.2
 Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 9/68 (13%)

Query: 66   GACGPGAGAAAPAPAAASLPEEPDGGGGP---DDLLPLPLWLVAEGIFRPQGERRKSGRK 122
            G  GP     A  PA  S P  P G  GP   D    +P      G   P G R +SG  
Sbjct: 1074 GPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIP------GPIGPPGPRGRSGET 1127

Query: 123  DKSGQSGD 130
              +G  G+
Sbjct: 1128 GPAGPPGN 1135



 Score = 27.3 bits (59), Expect = 4.6
 Identities = 26/91 (28%), Positives = 32/91 (35%), Gaps = 17/91 (18%)

Query: 40  PRPSQVTSASSKSPFSGHEAPAERGDGACG-PGAGAAAPAPAAASLPEEPDGGGGPDDLL 98
           P  +Q       +P S   A A    G  G PGA  +A AP  A  P  P   G P    
Sbjct: 316 PEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG--- 372

Query: 99  PLPLWLVAEGIFRPQGERRKSGRKDKSGQSG 129
                        PQG     G K ++G+ G
Sbjct: 373 -------------PQGATGPLGPKGQTGEPG 390


>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 384

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 6   TDPKAAGRRPPQLHEAAKKPDPQRKSN--KEAWGTVPRPSQVTSASSKSPFSGHEAPAER 63
           T P  AG   P    A   P P+++ +  +  W  +PR     +A S    S   A    
Sbjct: 197 TPPLPAGSPDPPSPAATAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPAS 256

Query: 64  GDGACGPGAGAAAPAPAAASL 84
           G GA   G+ AA P PA A L
Sbjct: 257 GSGAAMTGSWAAPPRPAWAGL 277


>gi|169204821 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 160

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 43/154 (27%), Positives = 58/154 (37%), Gaps = 25/154 (16%)

Query: 8   PKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGDGA 67
           PKAAGR      +A + P  +R +  +  G      ++    +    S H A    G  +
Sbjct: 2   PKAAGR------DAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLAS 55

Query: 68  CGPGA-GAAAPAPAAASLPEEPDGGGG-------PDDLLPLPLWLVA----------EGI 109
             PG  GA APAPA    P  P G G        PD   P P W ++             
Sbjct: 56  GRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAA 115

Query: 110 FRPQGERRKSGRKDKSGQSGDGRGETRDKTRSER 143
             P G R     +D SG +  GR   RD+  + R
Sbjct: 116 PPPAGSRGLLETQDTSGFASPGR-RPRDRRPARR 148


>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 384

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 6   TDPKAAGRRPPQLHEAAKKPDPQRKSN--KEAWGTVPRPSQVTSASSKSPFSGHEAPAER 63
           T P  AG   P    A   P P+++ +  +  W  +PR     +A S    S   A    
Sbjct: 197 TPPLPAGSPDPPSPAATAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPAS 256

Query: 64  GDGACGPGAGAAAPAPAAASL 84
           G GA   G+ AA P PA A L
Sbjct: 257 GSGAAMTGSWAAPPRPAWAGL 277


>gi|169205432 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 160

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 43/154 (27%), Positives = 58/154 (37%), Gaps = 25/154 (16%)

Query: 8   PKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGDGA 67
           PKAAGR      +A + P  +R +  +  G      ++    +    S H A    G  +
Sbjct: 2   PKAAGR------DAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLAS 55

Query: 68  CGPGA-GAAAPAPAAASLPEEPDGGGG-------PDDLLPLPLWLVA----------EGI 109
             PG  GA APAPA    P  P G G        PD   P P W ++             
Sbjct: 56  GRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAA 115

Query: 110 FRPQGERRKSGRKDKSGQSGDGRGETRDKTRSER 143
             P G R     +D SG +  GR   RD+  + R
Sbjct: 116 PPPAGSRGLLETQDTSGFASPGR-RPRDRRPARR 148


>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 384

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 6   TDPKAAGRRPPQLHEAAKKPDPQRKSN--KEAWGTVPRPSQVTSASSKSPFSGHEAPAER 63
           T P  AG   P    A   P P+++ +  +  W  +PR     +A S    S   A    
Sbjct: 197 TPPLPAGSPDPPSPAATAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPAS 256

Query: 64  GDGACGPGAGAAAPAPAAASL 84
           G GA   G+ AA P PA A L
Sbjct: 257 GSGAAMTGSWAAPPRPAWAGL 277


>gi|169204105 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 160

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 43/154 (27%), Positives = 58/154 (37%), Gaps = 25/154 (16%)

Query: 8   PKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGDGA 67
           PKAAGR      +A + P  +R +  +  G      ++    +    S H A    G  +
Sbjct: 2   PKAAGR------DAGRGPAARRGAGMQVTGPARPFHRLRPPDTHPRGSVHAAGVLDGLAS 55

Query: 68  CGPGA-GAAAPAPAAASLPEEPDGGGG-------PDDLLPLPLWLVA----------EGI 109
             PG  GA APAPA    P  P G G        PD   P P W ++             
Sbjct: 56  GRPGLLGAPAPAPALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAA 115

Query: 110 FRPQGERRKSGRKDKSGQSGDGRGETRDKTRSER 143
             P G R     +D SG +  GR   RD+  + R
Sbjct: 116 PPPAGSRGLLETQDTSGFASPGR-RPRDRRPARR 148


>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
          Length = 962

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 10/135 (7%)

Query: 4   ERTDPKAAGRRPPQLHEAAK-----KPDPQRKSNKE-AWGTVPRPSQVTSASSKSPFSGH 57
           ER+ PK A   PP L +  K      P+P+R++  E   G    P ++ +  S +P    
Sbjct: 432 ERSVPKEAEPTPPVLPDEEKGPPGPAPEPEREAETEPERGAGTEPERIGTEPSTAPAPSP 491

Query: 58  EAP---AERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQG 114
            AP    +    A   G  A+ P  AA S P EP G G  D     P    AE    P  
Sbjct: 492 PAPKSCLKHRPAAASEGPAASPPLAAAESPPVEP-GPGSLDAEAAAPERPKAERAEAPPA 550

Query: 115 ERRKSGRKDKSGQSG 129
              ++  + K+ + G
Sbjct: 551 GAERAAPERKAERGG 565


>gi|60460889 Myb protein P42POP [Homo sapiens]
          Length = 399

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 15/114 (13%)

Query: 20  EAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP--AERGDGACGPGAGAAAP 77
           E  K+ +  ++  KE    VP  +Q    +++  FS  E    A  G G   PGAGA A 
Sbjct: 75  EVQKRWNDFKRRTKEKLARVPHSTQGAGPAAEDAFSAEEETIFAILGPGVAAPGAGAGAE 134

Query: 78  APAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSGRKDKSGQSGDG 131
            P AA   + P     P        ++++E       +RR+  R D S  S  G
Sbjct: 135 EPPAAPSSQPPPPSACPQ------RYVLSE-------DRREDRRADTSAHSKAG 175


>gi|6912458 calcineurin binding protein 1 [Homo sapiens]
          Length = 2220

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 12   GRRPPQLHEAAKKPDPQR--KSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGDGACG 69
            G  P    E   +P+P+R  ++ + A  T P  S  T+ASSK+P SG   P E   G   
Sbjct: 2061 GAEPTCSQEGKLRPEPRRDGEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPE 2120

Query: 70   PGAGAAAPAP 79
            P    + P P
Sbjct: 2121 PSRAKSRPLP 2130


>gi|124430752 kinesin family member 26B [Homo sapiens]
          Length = 2108

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 2/87 (2%)

Query: 8   PKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGDGA 67
           P++  R+  +   A  +P P+   +  A G+   PS  +  SS S F+G   PA  G G 
Sbjct: 37  PESWYRKAYEESRAGSRPTPEGAGS--ALGSSGTPSPGSGTSSPSSFTGSPGPASPGIGT 94

Query: 68  CGPGAGAAAPAPAAASLPEEPDGGGGP 94
             PG+   +P     S      GG  P
Sbjct: 95  SSPGSLGGSPGFGTGSPGSGSGGGSSP 121


>gi|30181233 leucine-rich repeats and calponin homology (CH) domain
           containing 4 [Homo sapiens]
          Length = 683

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 41/152 (26%), Positives = 58/152 (38%), Gaps = 22/152 (14%)

Query: 3   TERTDPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQ--------VTSASSKSPF 54
           + R +P    RR P   +  ++ + +++    AWG   + S         V  A++ S  
Sbjct: 392 SRREEPAGEERRRPDTLQLWQERERRQQQQSGAWGAPRKDSLLKPGLRAVVGGAAAVSTQ 451

Query: 55  SGHEAPAERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQG 114
           + H    +      G  AG  APAPA AS  +EP    GP    P P         RP G
Sbjct: 452 AMHNGSPKSSASQAGAAAGQGAPAPAPAS--QEPLPIAGP-ATAPAP---------RPLG 499

Query: 115 --ERRKSGRKDKSGQSGDGRGETRDKTRSERF 144
             +R  S     S QSG G        R  R+
Sbjct: 500 SIQRPNSFLFRSSSQSGSGPSSPDSVLRPRRY 531


>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
          Length = 1489

 Score = 37.0 bits (84), Expect = 0.006
 Identities = 33/106 (31%), Positives = 40/106 (37%), Gaps = 14/106 (13%)

Query: 8   PKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASS-------KSPFSGHEAP 60
           P+  GR PP    A   P P  ++  +   +   PS V S  S       K   SG+E  
Sbjct: 771 PQYPGRGPPP---APPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETE 827

Query: 61  AERGDGACGPGAGAA----APAPAAASLPEEPDGGGGPDDLLPLPL 102
                    PG GAA     P P A   P +P     P D  PLPL
Sbjct: 828 TPFSPEGAFPGGGAAEEEGVPRPRAPPEPPDPGAPRPPPDPGPLPL 873



 Score = 26.9 bits (58), Expect = 6.0
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 7    DPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSG---HEAPAER 63
            DP    R+ P++        P + ++++    + R S      + +PF G      P E 
Sbjct: 1225 DPPKPERKGPEMPRLFLDLGPPQGNSEQIKARLSRLSLALPPLTLTPFPGPGPRRPPWEG 1284

Query: 64   GD--GACGPGAGAAAPAPAAASLPEEPD 89
             D   A G   GA AP PA     +E +
Sbjct: 1285 ADAGAAGGEAGGAGAPGPAEEDGEDEDE 1312


>gi|199560536 hypothetical protein LOC283643 isoform 4 [Homo
           sapiens]
          Length = 352

 Score = 36.2 bits (82), Expect = 0.010
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 66  GACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSGRKDKS 125
           G C P   AAA  P    LP  P+ GGG  DL+   L  + E + R   ERR++  + K+
Sbjct: 188 GTCAPEVPAAASQPTF--LPWVPERGGGELDLVVRELQALEEEL-REAAERRRAAWEAKA 244

Query: 126 GQSGDG 131
           G  G G
Sbjct: 245 GGCGRG 250


>gi|199560438 hypothetical protein LOC283643 isoform 2 [Homo
           sapiens]
          Length = 393

 Score = 36.2 bits (82), Expect = 0.010
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 66  GACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSGRKDKS 125
           G C P   AAA  P    LP  P+ GGG  DL+   L  + E + R   ERR++  + K+
Sbjct: 229 GTCAPEVPAAASQPTF--LPWVPERGGGELDLVVRELQALEEEL-REAAERRRAAWEAKA 285

Query: 126 GQSGDG 131
           G  G G
Sbjct: 286 GGCGRG 291


>gi|199560355 hypothetical protein LOC283643 isoform 1 [Homo
           sapiens]
          Length = 426

 Score = 36.2 bits (82), Expect = 0.010
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 66  GACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSGRKDKS 125
           G C P   AAA  P    LP  P+ GGG  DL+   L  + E + R   ERR++  + K+
Sbjct: 262 GTCAPEVPAAASQPTF--LPWVPERGGGELDLVVRELQALEEEL-REAAERRRAAWEAKA 318

Query: 126 GQSGDG 131
           G  G G
Sbjct: 319 GGCGRG 324


>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
          Length = 1669

 Score = 35.8 bits (81), Expect = 0.013
 Identities = 38/132 (28%), Positives = 47/132 (35%), Gaps = 16/132 (12%)

Query: 15  PPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGD-GACGP-GA 72
           P Q     +   P R  +    G    P  V     + P  G   P  RGD G  GP G 
Sbjct: 549 PGQPGMTGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPPGPPGY 608

Query: 73  GAAAPA--------PAAASLPEEPDGGGGPDDLLPLPLWLVAEGI------FRPQGERRK 118
           G A P         P     P  P   G P  ++PLP    AEG+        PQG+R  
Sbjct: 609 GPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGSPGFPGPQGDRGF 668

Query: 119 SGRKDKSGQSGD 130
            G   + G  G+
Sbjct: 669 PGTPGRPGLPGE 680


>gi|117938759 GNAS complex locus XLas [Homo sapiens]
          Length = 1037

 Score = 35.8 bits (81), Expect = 0.013
 Identities = 35/122 (28%), Positives = 44/122 (36%), Gaps = 28/122 (22%)

Query: 2   VTERTDPKAAGRRPPQLHEAA------------KKPDPQRKSNKEAWGTVPRPSQVTSAS 49
           V+   D +    RPP   EAA            K P P   S      +    ++   A+
Sbjct: 339 VSGAPDKRERAERPPVEEEAAEMEGAADAAEGGKVPSPGYGSPAAGAASADTAARAAPAA 398

Query: 50  SKSPFSGHE--------APAERGDGA--CGPGAGAAAPAPA------AASLPEEPDGGGG 93
              P SG          APA+   GA    P +GAA  APA      A   P +PD G  
Sbjct: 399 PADPDSGATPEDPDSGTAPADPDSGAFAADPDSGAAPAAPADPDSGAAPDAPADPDSGAA 458

Query: 94  PD 95
           PD
Sbjct: 459 PD 460



 Score = 31.6 bits (70), Expect = 0.25
 Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 19/96 (19%)

Query: 6   TDPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGD 65
           T  +AA   P      A   DP         GT P     + A +  P SG  APA   D
Sbjct: 390 TAARAAPAAPADPDSGATPEDPDS-------GTAPADPD-SGAFAADPDSG-AAPAAPAD 440

Query: 66  GACGPGAGAAAPAP------AAASLPEEPDGGGGPD 95
               P +GAA  AP      AA   P +PD G  P+
Sbjct: 441 ----PDSGAAPDAPADPDSGAAPDAPADPDAGAAPE 472


>gi|121114296 caudal type homeobox 1 [Homo sapiens]
          Length = 265

 Score = 35.8 bits (81), Expect = 0.013
 Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 26/148 (17%)

Query: 8   PKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGDGA 67
           P + G  P      A  P P +  +  ++  V  P+     +  +PF     PA + D A
Sbjct: 20  PASLGLGPQAYGPPAPPPAPPQYPDFSSYSHV-EPAPAPPTAWGAPF-----PAPKDDWA 73

Query: 68  CGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPL------WLVAEGIFRP-----QGER 116
              G G AAPA + ASL       G P D  P+P        L+A+ +  P      G +
Sbjct: 74  AAYGPGPAAPAASPASL-----AFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPGAQ 128

Query: 117 RKSG----RKDKSGQSGDGRGETRDKTR 140
           R +     R+  +   G G G+TR K +
Sbjct: 129 RPTPYEWMRRSVAAGGGGGSGKTRTKDK 156


>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
           sapiens]
          Length = 1152

 Score = 35.4 bits (80), Expect = 0.017
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 14/114 (12%)

Query: 43  SQVTSASSKSPFSGHEAPAERGDGACGPGAGAAAPAPAAASLPEEPD--------GGGGP 94
           ++V+   +KS     + P  RGDG C  G+  A           E D         G G 
Sbjct: 634 AEVSEGKAKSVGEAEDGPEGRGDGTCEEGSSGAEHWQDEEREKGEKDKGRGEMERPGEGE 693

Query: 95  DDLLPLPLWLVAEGIFRPQGERRKSGRKDKS------GQSGDGRGETRDKTRSE 142
            +L     W   +G  + Q ER +  +K+++      G+   G GE  +  R E
Sbjct: 694 KELAEKEEWKKRDGEEQEQKEREQGHQKERNQEMEEGGEEEHGEGEEEEGDREE 747


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 35.4 bits (80), Expect = 0.017
 Identities = 35/136 (25%), Positives = 48/136 (35%), Gaps = 21/136 (15%)

Query: 16  PQLHEAAKKPDPQRKSNKE--AWGTVPRPSQVTSASSKSPFSGHEAPAERGDGACGPG-- 71
           PQ H+  + P P + S+K   A G  P P   ++  + S       P        GPG  
Sbjct: 91  PQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPT 150

Query: 72  -----------AGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGE---RR 117
                       GA  P P ++ +P  P   GGP    P P  +   G    QG      
Sbjct: 151 PTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPP---PPPAAVPGPGPGPKQGPGPGGP 207

Query: 118 KSGRKDKSGQSGDGRG 133
           K G+     + G G G
Sbjct: 208 KGGKMPGGPKPGGGPG 223



 Score = 30.8 bits (68), Expect = 0.42
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 15  PPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP---AERGDGACGPG 71
           PP  H+  ++P PQ+   ++     P P        + P    ++      +G G   PG
Sbjct: 62  PPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPA-PG 120

Query: 72  AGAAAPAPAAASLPEEPDGGGGPDDLLPLP 101
            G+A PA ++A  P  P   G P    P P
Sbjct: 121 VGSAPPASSSAP-PATPPTSGAPPGSGPGP 149



 Score = 30.4 bits (67), Expect = 0.55
 Identities = 24/98 (24%), Positives = 33/98 (33%), Gaps = 4/98 (4%)

Query: 1   MVTERTDPKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP 60
           +V +   P       P    +A    P         G  P P+   + +S  P +    P
Sbjct: 110 VVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTP 169

Query: 61  AERGDGACGPGAGAAAPAPAA----ASLPEEPDGGGGP 94
              G     P AG   P PAA       P++  G GGP
Sbjct: 170 PSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGP 207


>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
           sapiens]
          Length = 1189

 Score = 35.4 bits (80), Expect = 0.017
 Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 13/92 (14%)

Query: 12  GRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQV-TSASSKSP----FSGHEAPA-ERGD 65
           GR+PP  + +A  P PQ +      G+ P P  + +S SS  P      GH +P    G 
Sbjct: 445 GRKPPAFYTSASPPGPQFQ------GSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGS 498

Query: 66  GACGPGAG-AAAPAPAAASLPEEPDGGGGPDD 96
               P AG    P P +  LP  P    GP +
Sbjct: 499 PGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQN 530


>gi|210031154 zinc finger protein 541 [Homo sapiens]
          Length = 1365

 Score = 35.0 bits (79), Expect = 0.022
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 40  PRPSQVTSASSKSPFSGHEAPAERGDGACGPGAGAAAPAPAAASLPEEP 88
           P P+   ++ S+   +    PA  G  +C P    AAPA     LPEEP
Sbjct: 290 PGPAPAGASDSEGRNTACPCPASSGSSSCTPAGPHAAPAALDTELPEEP 338



 Score = 32.7 bits (73), Expect = 0.11
 Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 38  TVPRPSQVTSASSKSPFSGHEAPAERGDGAC---GPGA------GAAAPAPAAASLPEE- 87
           TVP  SQ +S S +   +    P  +G+       P A        + P P++ S  EE 
Sbjct: 401 TVPASSQPSSHSFQWLRNLPGCPKSKGNNVFVVHKPSAVPSREGSESGPGPSSGSPSEES 460

Query: 88  -PDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSGRKD 123
            P  GGG +D LP P  L+      P   R  SG  D
Sbjct: 461 PPGPGGGLEDALPFPAALLRVPAEAPSDPRSASGEDD 497


>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
          Length = 808

 Score = 34.7 bits (78), Expect = 0.029
 Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 11/106 (10%)

Query: 10  AAGRRPPQLHEAAKKP---------DPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAP 60
           AAG   P+  EA   P          P R  ++ A G +     +      +  SG  A 
Sbjct: 127 AAGADSPKTEEARPSPAPGPGTPTGTPTRTPSRTAPGALTAKPPLAPKPGTTVASGVTAR 186

Query: 61  AERGDGACGPGAGAAAPAPAAASLPEEPDG-GGGPDDLLPLPLWLV 105
           +  G    G GA AA  A +A   PE+P G G GP      P+ +V
Sbjct: 187 SASGQVTGGHGAAAATSA-SAGQAPEDPSGPGTGPSGTCEAPVAVV 231



 Score = 30.8 bits (68), Expect = 0.42
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 15 PPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGDGACGPGAGA 74
          PP+ H A   P P  + ++     V  P    + ++ +P +   AP E         A  
Sbjct: 11 PPRRHGAPAAPSPPPRGSRAGPVVVVAPGPPVTTATSAPVT-LVAPGEARPAWVPGSAET 69

Query: 75 AAPAPAAASLP 85
          +APAPA A  P
Sbjct: 70 SAPAPAPAPAP 80


>gi|209862782 hypothetical protein LOC730130 [Homo sapiens]
          Length = 380

 Score = 34.7 bits (78), Expect = 0.029
 Identities = 18/47 (38%), Positives = 21/47 (44%)

Query: 58  EAPAERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWL 104
           E PA RG  A  PGA     + AAA  PE       P +   LP W+
Sbjct: 9   EGPARRGGAARRPGAPGGPGSEAAAGCPEPLSTAEAPAESATLPAWM 55


>gi|171543895 ataxin 2 [Homo sapiens]
          Length = 1313

 Score = 34.3 bits (77), Expect = 0.038
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 37  GTVPRPSQVTSASSKSPFSGHEAPAERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDD 96
           G VP PS   S SS+ P      P      A  P    + P    +  P  P   G P  
Sbjct: 548 GGVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAP 607

Query: 97  LLPLPLWLVAEGIFRPQGERRKSGRKDKSGQSGDGRG 133
           +  +P  + +EG   P     K+ R  ++ +   GRG
Sbjct: 608 VSTMPKRMSSEG---PPRMSPKAQRHPRNHRVSAGRG 641



 Score = 26.9 bits (58), Expect = 6.0
 Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 22/83 (26%)

Query: 58  EAPAERGDGACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERR 117
           + PA R     G G G AAP P  ++ P  P  G GP                 P  +  
Sbjct: 32  QRPARRS----GRGGGGAAPGPYPSAAPPPP--GPGPP----------------PSRQSS 69

Query: 118 KSGRKDKSGQSGDGRGETRDKTR 140
                D  G +G+G G  R  +R
Sbjct: 70  PPSASDCFGSNGNGGGAFRPGSR 92


>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
          Length = 2400

 Score = 34.3 bits (77), Expect = 0.038
 Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 28/148 (18%)

Query: 8    PKAAGRRPPQLHEAAKKPDPQRKSNKEAWGTVPRPSQVTSASSKSPFSGHEAPAERGD-- 65
            P+A G   P+  E  +  D + ++  E+ G     +Q     ++    G EAP   G+  
Sbjct: 2135 PEAEGEAQPE-SEGVEAQDAEGEAQPESEGI---EAQEAEEEAQPELEGVEAPEAEGEAQ 2190

Query: 66   ----GACGPGA-GAAAPAPAAASLPE-------EPDGGGGPDDLLPLPLWLVAEGIFRPQ 113
                G   P A G A P       PE       EP+G   P+          AEG  +P+
Sbjct: 2191 PESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPE----------AEGEAQPE 2240

Query: 114  GERRKSGRKDKSGQSGDGRGETRDKTRS 141
             E    G K  S Q   G G++ + + S
Sbjct: 2241 SEGETQGEKKGSPQVSLGDGQSEEASES 2268



 Score = 28.9 bits (63), Expect = 1.6
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 8    PKAAGRRPPQLHEAAKKPDPQRKSNKEAWGT-VPRPSQVTSASSKSPFSGHEAPAER--- 63
            P+A G   P+L E  + P+ + ++  E  G   P         S+    G +  + +   
Sbjct: 2199 PEAEGEAQPEL-EGVEAPEAEEEAQPEPEGVETPEAEGEAQPESEGETQGEKKGSPQVSL 2257

Query: 64   GDGACGPGAGAAAPAPAAASLPEEPDGGGGP 94
            GDG     + +++P P     P    GG  P
Sbjct: 2258 GDGQSEEASESSSPVPEDRPTPPPSPGGDTP 2288


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.308    0.130    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,884,312
Number of Sequences: 37866
Number of extensions: 524370
Number of successful extensions: 4851
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 535
Number of HSP's that attempted gapping in prelim test: 3808
Number of HSP's gapped (non-prelim): 1456
length of query: 145
length of database: 18,247,518
effective HSP length: 92
effective length of query: 53
effective length of database: 14,763,846
effective search space: 782483838
effective search space used: 782483838
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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