Search of human proteins with 169194552

Search of human proteins with 169194552

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169194552 PREDICTED: similar to small nuclear
ribonucleoprotein polypeptide G [Homo sapiens]
         (62 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169194552 PREDICTED: similar to small nuclear ribonucleoprote...   124   1e-29
gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo s...   118   9e-28
gi|226442852 small nuclear ribonucleoprotein G-like protein [Hom...   110   2e-25
gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like p...   110   2e-25
gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like p...   110   2e-25
gi|169203121 PREDICTED: similar to small nuclear ribonucleoprote...    82   9e-17
gi|169203577 PREDICTED: similar to small nuclear ribonucleoprote...    82   9e-17
gi|169202369 PREDICTED: similar to small nuclear ribonucleoprote...    82   9e-17
gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo sapiens]     47   3e-06
gi|5901998 Sm protein F [Homo sapiens]                                 40   5e-04
gi|7657313 Lsm1 protein [Homo sapiens]                                 39   7e-04
gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens]     35   0.017
gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo s...    34   0.022
gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens]             34   0.029
gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens]             34   0.029
gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo ...    34   0.029
gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform...    30   0.42 
gi|213385305 LSM5 homolog, U6 small nuclear RNA associated isofo...    29   0.93 
gi|195222722 LSM5 homolog, U6 small nuclear RNA associated isofo...    29   0.93 
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso...    28   1.6  
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof...    28   1.6  
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ...    27   3.5  
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ...    27   3.5  
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ...    27   3.5  
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ...    27   3.5  
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s...    27   3.5  

>gi|169194552 PREDICTED: similar to small nuclear
          ribonucleoprotein polypeptide G [Homo sapiens]
          Length = 62

 Score =  124 bits (312), Expect = 1e-29
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 1  MDKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNNTGMVVIRGNSILMLEA 60
          MDKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNNTGMVVIRGNSILMLEA
Sbjct: 1  MDKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNNTGMVVIRGNSILMLEA 60

Query: 61 LE 62
          LE
Sbjct: 61 LE 62


>gi|4507133 small nuclear ribonucleoprotein polypeptide G [Homo
          sapiens]
          Length = 76

 Score =  118 bits (296), Expect = 9e-28
 Identities = 58/62 (93%), Positives = 60/62 (96%)

Query: 1  MDKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNNTGMVVIRGNSILMLEA 60
          MDKKLSLKLNGGRHVQGIL+G DPFMNLVIDECVEMATSGQQNN GMVVIRGNSI+MLEA
Sbjct: 13 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEA 72

Query: 61 LE 62
          LE
Sbjct: 73 LE 74


>gi|226442852 small nuclear ribonucleoprotein G-like protein [Homo
          sapiens]
          Length = 74

 Score =  110 bits (275), Expect = 2e-25
 Identities = 54/61 (88%), Positives = 56/61 (91%)

Query: 2  DKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNNTGMVVIRGNSILMLEAL 61
          DKK SLKLNGGRHVQGIL+G DPFMNLVIDECVEMATSGQQ N GMV IRGNSI+MLEAL
Sbjct: 14 DKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMVEIRGNSIIMLEAL 73

Query: 62 E 62
          E
Sbjct: 74 E 74


>gi|239751668 PREDICTED: small nuclear ribonucleoprotein G-like
          protein [Homo sapiens]
          Length = 74

 Score =  110 bits (275), Expect = 2e-25
 Identities = 54/61 (88%), Positives = 56/61 (91%)

Query: 2  DKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNNTGMVVIRGNSILMLEAL 61
          DKK SLKLNGGRHVQGIL+G DPFMNLVIDECVEMATSGQQ N GMV IRGNSI+MLEAL
Sbjct: 14 DKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMVEIRGNSIIMLEAL 73

Query: 62 E 62
          E
Sbjct: 74 E 74


>gi|239746174 PREDICTED: small nuclear ribonucleoprotein G-like
          protein [Homo sapiens]
          Length = 74

 Score =  110 bits (275), Expect = 2e-25
 Identities = 54/61 (88%), Positives = 56/61 (91%)

Query: 2  DKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNNTGMVVIRGNSILMLEAL 61
          DKK SLKLNGGRHVQGIL+G DPFMNLVIDECVEMATSGQQ N GMV IRGNSI+MLEAL
Sbjct: 14 DKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKNIGMVEIRGNSIIMLEAL 73

Query: 62 E 62
          E
Sbjct: 74 E 74


>gi|169203121 PREDICTED: similar to small nuclear
          ribonucleoprotein polypeptide G [Homo sapiens]
          Length = 75

 Score = 82.0 bits (201), Expect = 9e-17
 Identities = 43/59 (72%), Positives = 47/59 (79%)

Query: 4  KLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNNTGMVVIRGNSILMLEALE 62
          KLSLKLNGGR VQGIL G   FMNL+IDECV+MA SGQQNN   V I GNSI+ L+ALE
Sbjct: 15 KLSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTVEIGGNSIITLKALE 73


>gi|169203577 PREDICTED: similar to small nuclear
          ribonucleoprotein polypeptide G [Homo sapiens]
          Length = 75

 Score = 82.0 bits (201), Expect = 9e-17
 Identities = 43/59 (72%), Positives = 47/59 (79%)

Query: 4  KLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNNTGMVVIRGNSILMLEALE 62
          KLSLKLNGGR VQGIL G   FMNL+IDECV+MA SGQQNN   V I GNSI+ L+ALE
Sbjct: 15 KLSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTVEIGGNSIITLKALE 73


>gi|169202369 PREDICTED: similar to small nuclear
          ribonucleoprotein polypeptide G [Homo sapiens]
          Length = 75

 Score = 82.0 bits (201), Expect = 9e-17
 Identities = 43/59 (72%), Positives = 47/59 (79%)

Query: 4  KLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNNTGMVVIRGNSILMLEALE 62
          KLSLKLNGGR VQGIL G   FMNL+IDECV+MA SGQQNN   V I GNSI+ L+ALE
Sbjct: 15 KLSLKLNGGRCVQGILWGFSHFMNLMIDECVKMAISGQQNNIRTVEIGGNSIITLKALE 73


>gi|7706423 U6 snRNA-associated Sm-like protein LSm7 [Homo
          sapiens]
          Length = 103

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 1  MDKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVE--------MATSGQQNNTGMVVIRG 52
          +DK + +K  GGR   GIL+G DP +NLV+D  +E           +      G+VV RG
Sbjct: 19 IDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRG 78

Query: 53 NSILML 58
           S++++
Sbjct: 79 TSVVLI 84


>gi|5901998 Sm protein F [Homo sapiens]
          Length = 80

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 7  LKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNNTGMVVIRGNSILML 58
          +KLN G   +G+L  LD +MN+ +++  E      +N  G   IRGN++L +
Sbjct: 22 VKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRGNNVLYI 73


>gi|7657313 Lsm1 protein [Homo sapiens]
          Length = 133

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)

Query: 1  MDKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNN---TGMVVIRGNSILM 57
          +DKK  + L  GR + G L+ +D F NLV+ + VE    G++      G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73

Query: 58 LEALE 62
          L  ++
Sbjct: 74 LGEID 78


>gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo
          sapiens]
          Length = 96

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 16/66 (24%), Positives = 38/66 (57%), Gaps = 4/66 (6%)

Query: 1  MDKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQN----NTGMVVIRGNSIL 56
          +++ +++  + GR + G L+G D  +NL++DE  E   S  Q       G+ ++RG+++ 
Sbjct: 9  INRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVA 68

Query: 57 MLEALE 62
          ++  ++
Sbjct: 69 VIGEID 74


>gi|4507129 small nuclear ribonucleoprotein polypeptide E [Homo
          sapiens]
          Length = 92

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 13/48 (27%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 15 VQGILQGLDPFMNLVIDECVEM-ATSGQQNNTGMVVIRGNSILMLEAL 61
          ++G + G D +MNLV+D+  E+ + +  +   G ++++G++I +L+++
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90


>gi|169213675 PREDICTED: similar to hCG23490 [Homo sapiens]
          Length = 92

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 13/48 (27%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 15 VQGILQGLDPFMNLVIDECVEM-ATSGQQNNTGMVVIRGNSILMLEAL 61
          ++G + G D +MNLV+D+  E+ + +  +   G ++++G +I +L+++
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGGNITLLQSV 90


>gi|169214137 PREDICTED: similar to hCG23490 [Homo sapiens]
          Length = 92

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 13/48 (27%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 15 VQGILQGLDPFMNLVIDECVEM-ATSGQQNNTGMVVIRGNSILMLEAL 61
          ++G + G D +MNLV+D+  E+ + +  +   G ++++G +I +L+++
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGGNITLLQSV 90


>gi|169213483 PREDICTED: hypothetical protein LOC100130109 [Homo
          sapiens]
          Length = 92

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 13/48 (27%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 15 VQGILQGLDPFMNLVIDECVEM-ATSGQQNNTGMVVIRGNSILMLEAL 61
          ++G + G D +MNLV+D+  E+ + +  +   G ++++G +I +L+++
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGGNITLLQSV 90


>gi|6912488 LSM5 homolog, U6 small nuclear RNA associated isoform
          a [Homo sapiens]
          Length = 91

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 4  KLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQ---NNTGMVVIRGNSILML 58
          ++ + +   + + G L G D F+N+V+++  E   + +         +++ GN+I ML
Sbjct: 25 RIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITML 82


>gi|213385305 LSM5 homolog, U6 small nuclear RNA associated
          isoform b [Homo sapiens]
          Length = 62

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 9  LNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQ---NNTGMVVIRGNSILML 58
          +   + + G L G D F+N+V+++  E   + +         +++ GN+I ML
Sbjct: 1  MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITML 53


>gi|195222722 LSM5 homolog, U6 small nuclear RNA associated
          isoform b [Homo sapiens]
          Length = 62

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 9  LNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQ---NNTGMVVIRGNSILML 58
          +   + + G L G D F+N+V+++  E   + +         +++ GN+I ML
Sbjct: 1  MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITML 53


>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
          isoform B' [Homo sapiens]
          Length = 240

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 10/68 (14%)

Query: 1  MDKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNN----------TGMVVI 50
          +D ++   L  GR   G  +  D  MNL++ +C E      +N+           G+V++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72

Query: 51 RGNSILML 58
          RG +++ +
Sbjct: 73 RGENLVSM 80


>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B'
          isoform B [Homo sapiens]
          Length = 231

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 10/68 (14%)

Query: 1  MDKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNN----------TGMVVI 50
          +D ++   L  GR   G  +  D  MNL++ +C E      +N+           G+V++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72

Query: 51 RGNSILML 58
          RG +++ +
Sbjct: 73 RGENLVSM 80


>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
          sapiens]
          Length = 240

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 1  MDKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNN----------TGMVVI 50
          +D ++   L  GR   G  +  D  MNL++ +C E      +N            G+V++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72

Query: 51 RGNSILML 58
          RG +++ +
Sbjct: 73 RGENLVSM 80


>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
          sapiens]
          Length = 240

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 1  MDKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNN----------TGMVVI 50
          +D ++   L  GR   G  +  D  MNL++ +C E      +N            G+V++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72

Query: 51 RGNSILML 58
          RG +++ +
Sbjct: 73 RGENLVSM 80


>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
          sapiens]
          Length = 240

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 1  MDKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNN----------TGMVVI 50
          +D ++   L  GR   G  +  D  MNL++ +C E      +N            G+V++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72

Query: 51 RGNSILML 58
          RG +++ +
Sbjct: 73 RGENLVSM 80


>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
          sapiens]
          Length = 240

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 1  MDKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNN----------TGMVVI 50
          +D ++   L  GR   G  +  D  MNL++ +C E      +N            G+V++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72

Query: 51 RGNSILML 58
          RG +++ +
Sbjct: 73 RGENLVSM 80


>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
          sapiens]
          Length = 240

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 1  MDKKLSLKLNGGRHVQGILQGLDPFMNLVIDECVEMATSGQQNN----------TGMVVI 50
          +D ++   L  GR   G  +  D  MNL++ +C E      +N            G+V++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72

Query: 51 RGNSILML 58
          RG +++ +
Sbjct: 73 RGENLVSM 80


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,978,919
Number of Sequences: 37866
Number of extensions: 56029
Number of successful extensions: 151
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 26
length of query: 62
length of database: 18,247,518
effective HSP length: 35
effective length of query: 27
effective length of database: 16,922,208
effective search space: 456899616
effective search space used: 456899616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.