Search of human proteins with 169184330

Search of human proteins with 169184330

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169184330 PREDICTED: novel protein similar to contactin
associated protein-like 3 (CNTNAP3) [Homo sapiens]
         (291 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169184330 PREDICTED: novel protein similar to contactin assoc...   565   e-161
gi|47519929 cell recognition molecule CASPR3 [Homo sapiens]           551   e-157
gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2...   550   e-157
gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1...   550   e-157
gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo sap...   336   2e-92
gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo sap...   336   2e-92
gi|239743797 PREDICTED: similar to cell recognition molecule CAS...   290   1e-78
gi|239758135 PREDICTED: similar to cell recognition molecule CAS...   269   2e-72
gi|18640734 contactin associated protein-like 5 [Homo sapiens]        197   7e-51
gi|7662350 cell recognition molecule Caspr2 precursor [Homo sapi...   166   2e-41
gi|239752499 PREDICTED: similar to cell recognition molecule Cas...   146   2e-35
gi|4505463 contactin associated protein 1 precursor [Homo sapiens]    103   2e-22
gi|14211536 neurexin 2 isoform alpha-1 precursor [Homo sapiens]        40   0.002
gi|21166380 neurexin 2 isoform alpha-2 precursor [Homo sapiens]        40   0.002
gi|66346693 FAT tumor suppressor 1 precursor [Homo sapiens]            37   0.027
gi|148664211 immunoglobulin superfamily, member 4D isoform 2 [Ho...    34   0.17 
gi|148664190 immunoglobulin superfamily, member 4D isoform 1 [Ho...    34   0.17 
gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Hom...    33   0.23 
gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo s...    33   0.23 
gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sa...    33   0.23 
gi|41327708 crumbs homolog 1 precursor [Homo sapiens]                  33   0.39 
gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens]      32   0.50 
gi|169209664 PREDICTED: hypothetical protein FLJ39639 [Homo sapi...    32   0.66 
gi|113426298 PREDICTED: hypothetical protein FLJ39639 [Homo sapi...    32   0.66 
gi|113425870 PREDICTED: hypothetical protein LOC283876 [Homo sap...    32   0.66 
gi|5453844 TAF6-like RNA polymerase II [Homo sapiens]                  32   0.66 
gi|24497554 homeobox A13 [Homo sapiens]                                32   0.86 
gi|47519490 reticulon 4 isoform D [Homo sapiens]                       32   0.86 
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]            31   1.1  
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]            31   1.1  

>gi|169184330 PREDICTED: novel protein similar to contactin
           associated protein-like 3 (CNTNAP3) [Homo sapiens]
          Length = 291

 Score =  565 bits (1457), Expect = e-161
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 1   MKISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLY 60
           MKISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLY
Sbjct: 1   MKISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLY 60

Query: 61  VSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMV 120
           VSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMV
Sbjct: 61  VSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMV 120

Query: 121 EVNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGCAA 180
           EVNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGCAA
Sbjct: 121 EVNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGCAA 180

Query: 181 PLKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLV 240
           PLKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLV
Sbjct: 181 PLKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLV 240

Query: 241 NADRRDSAVIGGVIAVEIFILLCITAIAIRIYQQRKLRKENESKVSKKEEC 291
           NADRRDSAVIGGVIAVEIFILLCITAIAIRIYQQRKLRKENESKVSKKEEC
Sbjct: 241 NADRRDSAVIGGVIAVEIFILLCITAIAIRIYQQRKLRKENESKVSKKEEC 291


>gi|47519929 cell recognition molecule CASPR3 [Homo sapiens]
          Length = 1288

 Score =  551 bits (1421), Expect = e-157
 Identities = 285/290 (98%), Positives = 286/290 (98%)

Query: 2    KISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYV 61
            +ISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYV
Sbjct: 999  EISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYV 1058

Query: 62   SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE 121
            SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE
Sbjct: 1059 SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE 1118

Query: 122  VNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGCAAP 181
            VNQS KKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFG AAP
Sbjct: 1119 VNQSTKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGRAAP 1178

Query: 182  LKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLVN 241
            LKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGP DEGEPLVN
Sbjct: 1179 LKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPADEGEPLVN 1238

Query: 242  ADRRDSAVIGGVIAVEIFILLCITAIAIRIYQQRKLRKENESKVSKKEEC 291
            ADRRDSAVIGGVIAV IFILLCITAIAIRIYQQRKLRKENESKVSKKEEC
Sbjct: 1239 ADRRDSAVIGGVIAVVIFILLCITAIAIRIYQQRKLRKENESKVSKKEEC 1288


>gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2
            [Homo sapiens]
          Length = 1207

 Score =  550 bits (1417), Expect = e-157
 Identities = 284/291 (97%), Positives = 289/291 (99%)

Query: 1    MKISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLY 60
            ++ISAYFATGSSMTYHFQEHYTLSENSSSLVSSL+RDVTLTREMITLSFRTTR+PSLLLY
Sbjct: 917  IEISAYFATGSSMTYHFQEHYTLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLY 976

Query: 61   VSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMV 120
            VSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMV
Sbjct: 977  VSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMV 1036

Query: 121  EVNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGCAA 180
            EVNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFG AA
Sbjct: 1037 EVNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGRAA 1096

Query: 181  PLKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLV 240
            PLKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLV
Sbjct: 1097 PLKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLV 1156

Query: 241  NADRRDSAVIGGVIAVEIFILLCITAIAIRIYQQRKLRKENESKVSKKEEC 291
            NADRRDSAV+GGVIAV IFILLCITAIAIRIYQQRKLRKENESKVSKKEEC
Sbjct: 1157 NADRRDSAVMGGVIAVVIFILLCITAIAIRIYQQRKLRKENESKVSKKEEC 1207


>gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1
            [Homo sapiens]
          Length = 1288

 Score =  550 bits (1416), Expect = e-157
 Identities = 284/290 (97%), Positives = 288/290 (99%)

Query: 2    KISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYV 61
            +ISAYFATGSSMTYHFQEHYTLSENSSSLVSSL+RDVTLTREMITLSFRTTR+PSLLLYV
Sbjct: 999  EISAYFATGSSMTYHFQEHYTLSENSSSLVSSLYRDVTLTREMITLSFRTTRSPSLLLYV 1058

Query: 62   SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE 121
            SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE
Sbjct: 1059 SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE 1118

Query: 122  VNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGCAAP 181
            VNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFG AAP
Sbjct: 1119 VNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGRAAP 1178

Query: 182  LKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLVN 241
            LKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLVN
Sbjct: 1179 LKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLVN 1238

Query: 242  ADRRDSAVIGGVIAVEIFILLCITAIAIRIYQQRKLRKENESKVSKKEEC 291
            ADRRDSAV+GGVIAV IFILLCITAIAIRIYQQRKLRKENESKVSKKEEC
Sbjct: 1239 ADRRDSAVMGGVIAVVIFILLCITAIAIRIYQQRKLRKENESKVSKKEEC 1288


>gi|148664242 cell recognition protein CASPR4 isoform 2 [Homo sapiens]
          Length = 1235

 Score =  336 bits (861), Expect = 2e-92
 Identities = 176/286 (61%), Positives = 218/286 (76%), Gaps = 4/286 (1%)

Query: 2    KISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYV 61
            +ISAYF +GSS+ Y+FQE+Y LS+NSSS  +S H D+ L+REMI  SFRTTRTPSLLL+V
Sbjct: 926  EISAYFGSGSSVIYNFQENYLLSKNSSSHAASFHGDMKLSREMIKFSFRTTRTPSLLLFV 985

Query: 62   SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE 121
            SSFY+EYLSVI+A NGSLQIRYKL+++Q PD   FDFKNMADGQLH + INREE VV +E
Sbjct: 986  SSFYKEYLSVIIAKNGSLQIRYKLNKYQEPDVVNFDFKNMADGQLHHIMINREEGVVFIE 1045

Query: 122  VNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGCAAP 181
            ++ + ++QV LSSGTEF+AVKSL+LG++LE +  D DT  A   GFTGCLSAV+    AP
Sbjct: 1046 IDDNRRRQVHLSSGTEFSAVKSLVLGRILEHSDVDQDTALAGAQGFTGCLSAVQLSHVAP 1105

Query: 182  LKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLVN 241
            LKAAL PS P  VTV GHV   + C A   + + +RE   R    A  SG +D+ EPL N
Sbjct: 1106 LKAALHPSHPDPVTVTGHVTE-SSCMAQPGTDATSRE---RTHSFADHSGTIDDREPLAN 1161

Query: 242  ADRRDSAVIGGVIAVEIFILLCITAIAIRIYQQRKLRKENESKVSK 287
            A + DSAVIGG+IAV IFILLCITAIA+RIYQQ++L K +E+K S+
Sbjct: 1162 AIKSDSAVIGGLIAVVIFILLCITAIAVRIYQQKRLYKRSEAKRSE 1207


>gi|116284404 cell recognition protein CASPR4 isoform 1 [Homo sapiens]
          Length = 1308

 Score =  336 bits (861), Expect = 2e-92
 Identities = 176/286 (61%), Positives = 218/286 (76%), Gaps = 4/286 (1%)

Query: 2    KISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYV 61
            +ISAYF +GSS+ Y+FQE+Y LS+NSSS  +S H D+ L+REMI  SFRTTRTPSLLL+V
Sbjct: 999  EISAYFGSGSSVIYNFQENYLLSKNSSSHAASFHGDMKLSREMIKFSFRTTRTPSLLLFV 1058

Query: 62   SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE 121
            SSFY+EYLSVI+A NGSLQIRYKL+++Q PD   FDFKNMADGQLH + INREE VV +E
Sbjct: 1059 SSFYKEYLSVIIAKNGSLQIRYKLNKYQEPDVVNFDFKNMADGQLHHIMINREEGVVFIE 1118

Query: 122  VNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGCAAP 181
            ++ + ++QV LSSGTEF+AVKSL+LG++LE +  D DT  A   GFTGCLSAV+    AP
Sbjct: 1119 IDDNRRRQVHLSSGTEFSAVKSLVLGRILEHSDVDQDTALAGAQGFTGCLSAVQLSHVAP 1178

Query: 182  LKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLVN 241
            LKAAL PS P  VTV GHV   + C A   + + +RE   R    A  SG +D+ EPL N
Sbjct: 1179 LKAALHPSHPDPVTVTGHVTE-SSCMAQPGTDATSRE---RTHSFADHSGTIDDREPLAN 1234

Query: 242  ADRRDSAVIGGVIAVEIFILLCITAIAIRIYQQRKLRKENESKVSK 287
            A + DSAVIGG+IAV IFILLCITAIA+RIYQQ++L K +E+K S+
Sbjct: 1235 AIKSDSAVIGGLIAVVIFILLCITAIAVRIYQQKRLYKRSEAKRSE 1280


>gi|239743797 PREDICTED: similar to cell recognition molecule CASPR3
           [Homo sapiens]
          Length = 944

 Score =  290 bits (741), Expect = 1e-78
 Identities = 149/153 (97%), Positives = 151/153 (98%)

Query: 2   KISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYV 61
           +ISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYV
Sbjct: 732 EISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYV 791

Query: 62  SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE 121
           SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE
Sbjct: 792 SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE 851

Query: 122 VNQSAKKQVILSSGTEFNAVKSLILGKVLEAAG 154
           VNQSAKKQVILSSGTEFNAVKSLILGKVL  +G
Sbjct: 852 VNQSAKKQVILSSGTEFNAVKSLILGKVLGRSG 884



 Score =  127 bits (318), Expect = 2e-29
 Identities = 64/64 (100%), Positives = 64/64 (100%)

Query: 228 GRSGPVDEGEPLVNADRRDSAVIGGVIAVEIFILLCITAIAIRIYQQRKLRKENESKVSK 287
           GRSGPVDEGEPLVNADRRDSAVIGGVIAVEIFILLCITAIAIRIYQQRKLRKENESKVSK
Sbjct: 881 GRSGPVDEGEPLVNADRRDSAVIGGVIAVEIFILLCITAIAIRIYQQRKLRKENESKVSK 940

Query: 288 KEEC 291
           KEEC
Sbjct: 941 KEEC 944


>gi|239758135 PREDICTED: similar to cell recognition molecule CASPR3
           [Homo sapiens]
          Length = 140

 Score =  269 bits (688), Expect = 2e-72
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 13  MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI 72
           MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI
Sbjct: 1   MTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVI 60

Query: 73  LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL 132
           LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL
Sbjct: 61  LANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVIL 120

Query: 133 SSGTEFNAVKSLILGKVL 150
           SSGTEFNAVKSLILGKVL
Sbjct: 121 SSGTEFNAVKSLILGKVL 138


>gi|18640734 contactin associated protein-like 5 [Homo sapiens]
          Length = 1306

 Score =  197 bits (502), Expect = 7e-51
 Identities = 115/288 (39%), Positives = 170/288 (59%), Gaps = 6/288 (2%)

Query: 2    KISAYFATGSSMTYHFQEHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYV 61
            ++SA F  G+S+TY FQE Y +++N S   S+++ D   ++E I LSF TT+ PSLLL++
Sbjct: 997  EVSAVFEAGTSVTYMFQEPYPVTKNISLSSSAIYTDSAPSKENIALSFVTTQAPSLLLFI 1056

Query: 62   SSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVE 121
            +S  ++++ V+L  NGSLQ+RY L++ +    FT D  N A+ ++H +KINRE   + ++
Sbjct: 1057 NSSSQDFVVVLLCKNGSLQVRYHLNKEET-HVFTIDADNFANRRMHHLKINREGRELTIQ 1115

Query: 122  VNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGCAAP 181
            ++Q  +     S   EF  ++SL LGKV E  G D +  +A   GF GC+S+V++   AP
Sbjct: 1116 MDQQLRLSYNFSPEVEFRVIRSLTLGKVTENLGLDSEVAKANAMGFAGCMSSVQYNHIAP 1175

Query: 182  LKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLVN 241
            LKAALR +  + VTV G    +   + G    S    +   +   +   G  DE EPL N
Sbjct: 1176 LKAALRHATVAPVTVHG---TLTESSCGFMVDSDVNAVT-TVHSSSDPFGKTDEREPLTN 1231

Query: 242  ADRRDSAVIGGVIAVEIFILLCITAIAIRIYQQRKLRKENESKVSKKE 289
            A R DSAVIGGVIAV IFI+ CI  I  R   Q K +    S++ +KE
Sbjct: 1232 AVRSDSAVIGGVIAVVIFIIFCIIGIMTRFLYQHK-QSHRTSQMKEKE 1278


>gi|7662350 cell recognition molecule Caspr2 precursor [Homo sapiens]
          Length = 1331

 Score =  166 bits (420), Expect = 2e-41
 Identities = 113/304 (37%), Positives = 162/304 (53%), Gaps = 19/304 (6%)

Query: 3    ISAYFATGSSMTYHFQEHYTLSENSSSLVSSL------HRDVTLTREMITLSFRTTRTPS 56
            + A+F  G  + Y+FQ   T + +SSS V +       H D  L +E I  SF TT+ P 
Sbjct: 1005 VGAFFEEGMWLRYNFQAPATNARDSSSRVDNAPDQQNSHPD--LAQEEIRFSFSTTKAPC 1062

Query: 57   LLLYVSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEA 116
            +LLY+SSF  ++L+V++   GSLQIRY L   + P     D +NMA+GQ H V I R E 
Sbjct: 1063 ILLYISSFTTDFLAVLVKPTGSLQIRYNLGGTREPYNIDVDHRNMANGQPHSVNITRHEK 1122

Query: 117  VVMVEVNQ--SAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAV 174
             + ++++   S    +  SS T FN+ KSL LGKV+E    D +  +  T GFTGCLS V
Sbjct: 1123 TIFLKLDHYPSVSYHLPSSSDTLFNSPKSLFLGKVIETGKIDQEIHKYNTPGFTGCLSRV 1182

Query: 175  RFGCAAPLKAALRPSGPS-RVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPV 233
            +F   APLKAALR +  S  V ++G +   + C A   + SP              S   
Sbjct: 1183 QFNQIAPLKAALRQTNASAHVHIQGELVE-SNCGASPLTLSPMSSATDPWHLDHLDSASA 1241

Query: 234  D------EGEPLVNADRRDSAVIGGVIAVEIFILLCITAIAIR-IYQQRKLRKENESKVS 286
            D      +G+ + N   R+SA+IGGVIAV IF +LC     IR +++ +     NE+K +
Sbjct: 1242 DFPYNPGQGQAIRNGVNRNSAIIGGVIAVVIFTILCTLVFLIRYMFRHKGTYHTNEAKGA 1301

Query: 287  KKEE 290
            +  E
Sbjct: 1302 ESAE 1305


>gi|239752499 PREDICTED: similar to cell recognition molecule
           Caspr2, partial [Homo sapiens]
          Length = 140

 Score =  146 bits (368), Expect = 2e-35
 Identities = 74/74 (100%), Positives = 74/74 (100%)

Query: 77  GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 136
           GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT
Sbjct: 2   GSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGT 61

Query: 137 EFNAVKSLILGKVL 150
           EFNAVKSLILGKVL
Sbjct: 62  EFNAVKSLILGKVL 75


>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
          Length = 1384

 Score =  103 bits (257), Expect = 2e-22
 Identities = 55/154 (35%), Positives = 93/154 (60%), Gaps = 4/154 (2%)

Query: 40   LTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFK 99
            +T E ++ SF T+  P++LLYVSSF  +Y++V++ ++G+LQ+RY+L    +P  +    +
Sbjct: 1079 VTGEEVSFSFSTSSAPAVLLYVSSFVRDYMAVLIKDDGTLQLRYQLGT--SPYVYQLTTR 1136

Query: 100  NMADGQLHQVKINREEAVVMVEVNQS--AKKQVILSSGTEFNAVKSLILGKVLEAAGADP 157
             + DGQ H + I R    + ++V+     +++  L   ++ ++ K+L LG+V+E    DP
Sbjct: 1137 PVTDGQPHSINITRVYRNLFIQVDYFPLTEQKFSLLVDSQLDSPKALYLGRVMETGVIDP 1196

Query: 158  DTRRAATSGFTGCLSAVRFGCAAPLKAALRPSGP 191
            + +R  T GF+GCLS VRF   APLK   R   P
Sbjct: 1197 EIQRYNTPGFSGCLSGVRFNNVAPLKTHFRTPRP 1230


>gi|14211536 neurexin 2 isoform alpha-1 precursor [Homo sapiens]
          Length = 1712

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 20/150 (13%)

Query: 45  ITLSFRTTRTPSLLLYVSSFYE-EYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMAD 103
           ++ S RT  T +LLLY+    + ++L ++L + G L++R+ L   + P     D   +AD
Sbjct: 53  LSFSLRTNATRALLLYLDDGGDCDFLELLLVD-GRLRLRFTLSCAE-PATLQLDTP-VAD 109

Query: 104 GQLHQVKINREEAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAA 163
            + H V + R+     + V+  A+   + S   E      L +G      G  PD R +A
Sbjct: 110 DRWHMVLLTRDARRTALAVDGEARAAEVRSKRREMQVASDLFVG------GIPPDVRLSA 163

Query: 164 TSGFTGCLSAVRF-----GCAAPLKAALRP 188
            +     LS V++     G  A LK   RP
Sbjct: 164 LT-----LSTVKYEPPFRGLLANLKLGERP 188


>gi|21166380 neurexin 2 isoform alpha-2 precursor [Homo sapiens]
          Length = 1642

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 20/150 (13%)

Query: 45  ITLSFRTTRTPSLLLYVSSFYE-EYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMAD 103
           ++ S RT  T +LLLY+    + ++L ++L + G L++R+ L   + P     D   +AD
Sbjct: 53  LSFSLRTNATRALLLYLDDGGDCDFLELLLVD-GRLRLRFTLSCAE-PATLQLDTP-VAD 109

Query: 104 GQLHQVKINREEAVVMVEVNQSAKKQVILSSGTEFNAVKSLILGKVLEAAGADPDTRRAA 163
            + H V + R+     + V+  A+   + S   E      L +G      G  PD R +A
Sbjct: 110 DRWHMVLLTRDARRTALAVDGEARAAEVRSKRREMQVASDLFVG------GIPPDVRLSA 163

Query: 164 TSGFTGCLSAVRF-----GCAAPLKAALRP 188
            +     LS V++     G  A LK   RP
Sbjct: 164 LT-----LSTVKYEPPFRGLLANLKLGERP 188


>gi|66346693 FAT tumor suppressor 1 precursor [Homo sapiens]
          Length = 4588

 Score = 36.6 bits (83), Expect = 0.027
 Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 33/174 (18%)

Query: 11   SSMTYHFQEH--YTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEY 68
            SSMT     +  Y L+EN + L   L           T+  RT  T ++++Y      +Y
Sbjct: 3830 SSMTLTGNSYVKYRLTENENKLEMKL-----------TMRLRTYSTHAVVMYARG--TDY 3876

Query: 69   LSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADGQLHQV--KINREEAVVMVEVNQSA 126
             S++  ++G LQ  YK D    P   +     + DGQ H V  ++N   A ++++     
Sbjct: 3877 -SILEIHHGRLQ--YKFDCGSGPGIVSVQSIQVNDGQWHAVALEVNGNYARLVLD----- 3928

Query: 127  KKQVILSSGTEFNAVKSLILGKVLEAAG--ADPDTRRAAT----SGFTGCLSAV 174
              QV  +SGT    +K+L L   +   G      TR   +    +GF GC+ ++
Sbjct: 3929 --QVHTASGTAPGTLKTLNLDNYVFFGGHIRQQGTRHGRSPQVGNGFRGCMDSI 3980


>gi|148664211 immunoglobulin superfamily, member 4D isoform 2 [Homo
           sapiens]
          Length = 414

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 246 DSAVIGGVIAVEIFILLCITAIAIRIYQQRK 276
           D AVIGGV+AV +F +LC+  I  R + + K
Sbjct: 345 DHAVIGGVVAVVVFAMLCLLIILGRYFARHK 375


>gi|148664190 immunoglobulin superfamily, member 4D isoform 1 [Homo
           sapiens]
          Length = 442

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 246 DSAVIGGVIAVEIFILLCITAIAIRIYQQRK 276
           D AVIGGV+AV +F +LC+  I  R + + K
Sbjct: 373 DHAVIGGVVAVVVFAMLCLLIILGRYFARHK 403


>gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Homo
           sapiens]
          Length = 557

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 158 DTRRAATSGFTGCLSAVRFGCAA--PLKAALRPSGPSRVTVRGHVAPMARCAAGAASGSP 215
           D   AA  G  G +SA  +  A   P  A  + +G S   V G +AP+A  +A AA+ + 
Sbjct: 290 DQTMAAAFGAPGIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAA 349

Query: 216 ARELAPRLAGGAGRS 230
            R   P LA GAG S
Sbjct: 350 GRIAIPGLA-GAGNS 363


>gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo
            sapiens]
          Length = 3118

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 46/196 (23%), Positives = 74/196 (37%), Gaps = 17/196 (8%)

Query: 19   EHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILANNGS 78
            + + LS NS   ++     V   R  I L  RT     LL Y++       + +   NG 
Sbjct: 2760 KQFGLSRNSHIAIAFDDTKVK-NRLTIELEVRTEAESGLLFYMARINHADFATVQLRNGL 2818

Query: 79   LQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGTEF 138
                Y L    + D  T     + DGQ H++KI R +   ++ V+ ++ + +        
Sbjct: 2819 PYFSYDLG---SGDTHTMIPTKINDGQWHKIKIMRSKQEGILYVDGASNRTISPKKADIL 2875

Query: 139  NAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGCAAPLKAALRPSGPSRVTVRG 198
            + V  L +G        +  TRR       G ++    GC   L  A  P+   + T   
Sbjct: 2876 DVVGMLYVG----GLPINYTTRR------IGPVTYSIDGCVRNLHMAEAPADLEQPTSSF 2925

Query: 199  HVAPMARCAAGAASGS 214
            HV     C A A  G+
Sbjct: 2926 HV---GTCFANAQRGT 2938


>gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo
            sapiens]
          Length = 3122

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 46/196 (23%), Positives = 74/196 (37%), Gaps = 17/196 (8%)

Query: 19   EHYTLSENSSSLVSSLHRDVTLTREMITLSFRTTRTPSLLLYVSSFYEEYLSVILANNGS 78
            + + LS NS   ++     V   R  I L  RT     LL Y++       + +   NG 
Sbjct: 2764 KQFGLSRNSHIAIAFDDTKVK-NRLTIELEVRTEAESGLLFYMARINHADFATVQLRNGL 2822

Query: 79   LQIRYKLDRHQNPDAFTFDFKNMADGQLHQVKINREEAVVMVEVNQSAKKQVILSSGTEF 138
                Y L    + D  T     + DGQ H++KI R +   ++ V+ ++ + +        
Sbjct: 2823 PYFSYDLG---SGDTHTMIPTKINDGQWHKIKIMRSKQEGILYVDGASNRTISPKKADIL 2879

Query: 139  NAVKSLILGKVLEAAGADPDTRRAATSGFTGCLSAVRFGCAAPLKAALRPSGPSRVTVRG 198
            + V  L +G        +  TRR       G ++    GC   L  A  P+   + T   
Sbjct: 2880 DVVGMLYVG----GLPINYTTRR------IGPVTYSIDGCVRNLHMAEAPADLEQPTSSF 2929

Query: 199  HVAPMARCAAGAASGS 214
            HV     C A A  G+
Sbjct: 2930 HV---GTCFANAQRGT 2942


>gi|41327708 crumbs homolog 1 precursor [Homo sapiens]
          Length = 1406

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 4/100 (4%)

Query: 45  ITLSFRTTRTPSLLLYVSSFYEEYLSVILANNGSLQIRYKLDRHQNPDAFTFDFKNMADG 104
           I L F+T +  +LLL+ S+  + ++ + L +     I   +  +       F   N +DG
Sbjct: 510 IALRFQTVQPMALLLFRSN-RDVFVKLELLSG---YIHLSIQVNNQSKVLLFISHNTSDG 565

Query: 105 QLHQVKINREEAVVMVEVNQSAKKQVILSSGTEFNAVKSL 144
           + H V++   EAV +  ++ S K++ I  + T   + +S+
Sbjct: 566 EWHFVEVIFAEAVTLTLIDDSCKEKCIAKAPTPLESDQSI 605


>gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens]
          Length = 1185

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 202 PMARCAAGAASGSPARELAPRLAGGAGRSGPVDEGEPLVNADR-RDSAVIGGVIAVEIFI 260
           P A   AG+A G  A   +P L  GAG +G   EG P     R  DS  +  V+ V   +
Sbjct: 143 PGAAAPAGSAPGGVAAGASPGLGAGAGAAGCGGEGLPFRRGIRLLDSGSVENVLQVGFHL 202

Query: 261 LLCITAIA 268
              +T +A
Sbjct: 203 SGTVTELA 210


>gi|169209664 PREDICTED: hypothetical protein FLJ39639 [Homo
           sapiens]
          Length = 284

 Score = 32.0 bits (71), Expect = 0.66
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 161 RAATSGFTGCLSAVRFGCAAPLKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELA 220
           RAAT       S  R G  AP + +  P GP   T  G   P AR   GA+ GSP R+  
Sbjct: 98  RAATGTTVRGASVKRTGGPAPAQPS--PPGPLPPTPHG---PHARAETGASPGSPVRQPL 152

Query: 221 P 221
           P
Sbjct: 153 P 153


>gi|113426298 PREDICTED: hypothetical protein FLJ39639 [Homo
           sapiens]
          Length = 284

 Score = 32.0 bits (71), Expect = 0.66
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 161 RAATSGFTGCLSAVRFGCAAPLKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELA 220
           RAAT       S  R G  AP + +  P GP   T  G   P AR   GA+ GSP R+  
Sbjct: 98  RAATGTTVRGASVKRTGGPAPAQPS--PPGPLPPTPHG---PHARAETGASPGSPVRQPL 152

Query: 221 P 221
           P
Sbjct: 153 P 153


>gi|113425870 PREDICTED: hypothetical protein LOC283876 [Homo
           sapiens]
          Length = 284

 Score = 32.0 bits (71), Expect = 0.66
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 161 RAATSGFTGCLSAVRFGCAAPLKAALRPSGPSRVTVRGHVAPMARCAAGAASGSPARELA 220
           RAAT       S  R G  AP + +  P GP   T  G   P AR   GA+ GSP R+  
Sbjct: 98  RAATGTTVRGASVKRTGGPAPAQPS--PPGPLPPTPHG---PHARAETGASPGSPVRQPL 152

Query: 221 P 221
           P
Sbjct: 153 P 153


>gi|5453844 TAF6-like RNA polymerase II [Homo sapiens]
          Length = 622

 Score = 32.0 bits (71), Expect = 0.66
 Identities = 30/88 (34%), Positives = 35/88 (39%), Gaps = 7/88 (7%)

Query: 167 FTGCLSAVRFGCAAPLKAALRPSGPSR--VTVRGHVAPMARCAAGAASGSPARELAPRLA 224
           F G   A RFG   P   A RP G  +        V  M +  A A   SP  + +PR +
Sbjct: 447 FFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIV-SPHGDESPRGS 505

Query: 225 GGAG---RSGP-VDEGEPLVNADRRDSA 248
           GG G    SGP   E  PL    R   A
Sbjct: 506 GGGGPASASGPAASESRPLPRVHRARGA 533


>gi|24497554 homeobox A13 [Homo sapiens]
          Length = 388

 Score = 31.6 bits (70), Expect = 0.86
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 152 AAGADPDTRRAATSGFTGCLSAVRFGCAAPLKAALRPSGPSRVT-VRGHVAPMARCAAGA 210
           AAG +     AA +      +  R   A P  A L P   S  +   G   P A  AA A
Sbjct: 65  AAGGNFSVAAAAAAAAAAAANQCRNLMAHP--APLAPGAASAYSSAPGEAPPSAAAAAAA 122

Query: 211 ASGSPARELAPRLAGGAGRSGP 232
           A+ + A   A   +GG G +GP
Sbjct: 123 AAAAAAAAAAASSSGGPGPAGP 144


>gi|47519490 reticulon 4 isoform D [Homo sapiens]
          Length = 392

 Score = 31.6 bits (70), Expect = 0.86
 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 18/98 (18%)

Query: 187 RPSGPSRVTVRGHVAPMARCAAGAASGSPARELAPRLAGGAGRSGPVDE--------GEP 238
           RP  P   +V     P+    A A +  P+   AP+  G    SG VDE         EP
Sbjct: 142 RPPPPPPASVSPQAEPVWTPPAPAPAAPPSTPAAPKRRGS---SGSVDETLFALPAASEP 198

Query: 239 LVNADR-------RDSAVIGGVIAVEIFILLCITAIAI 269
           ++ +         RD    G V    +F+LL +T  +I
Sbjct: 199 VIRSSAVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSI 236


>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 308

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 157 PDTRRAATSGFTGCLSAVRFGCAAPLKAALRPSGPSRVTV----RGHVAPMARCAAGAAS 212
           P  RRA+ SG  G  SA R  C+A   +A +  GP+R  V    R      A     +  
Sbjct: 100 PLGRRASCSGRAG--SAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPG 157

Query: 213 GSPARELAPRLAGGAGRSGPVDEGEP 238
           G P  E   R      R  P+  G P
Sbjct: 158 GRPGSEARGRSGAECARRVPLHHGPP 183


>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 308

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 157 PDTRRAATSGFTGCLSAVRFGCAAPLKAALRPSGPSRVTV----RGHVAPMARCAAGAAS 212
           P  RRA+ SG  G  SA R  C+A   +A +  GP+R  V    R      A     +  
Sbjct: 100 PLGRRASCSGRAG--SAGRLRCSAAALSAAQRGGPARAQVPPALRTFSPGPASPPRASPG 157

Query: 213 GSPARELAPRLAGGAGRSGPVDEGEP 238
           G P  E   R      R  P+  G P
Sbjct: 158 GRPGSEARGRSGAECARRVPLHHGPP 183


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,980,568
Number of Sequences: 37866
Number of extensions: 429824
Number of successful extensions: 2088
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 2017
Number of HSP's gapped (non-prelim): 100
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.