LOC100294401 21248

Name: LOC100294401	Sequence: fasta or formatted (140aa)		NCBI GI: 239752499
Description: PREDICTED: similar to cell recognition molecule Caspr2, partial		Referenced in: Neurons
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.4 9 1 C cysteine 0.7 1 1 D aspartate 6.4 9 1 E glutamate 5.0 7 2 F phenylalanine 7.1 10 1 G glycine 3.6 5 1 H histidine 2.1 3 1 I isoleucine 6.4 9 1 K lysine 7.1 10 2 L leucine 10.0 14 1 M methionine 1.4 2 1 N asparagine 6.4 9 1 P proline 2.9 4 1 Q glutamine 5.7 8 1 R arginine 4.3 6 2 S serine 8.6 12 2 T threonine 6.4 9 2 V valine 7.1 10 2 W tryptophan 0.0 0 0 Y tyrosine 2.1 3 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to cell recognition molecule Cas... LOC389722 0.482 PREDICTED: similar to cell recognition molecule CAS... LOC643827 0.482 PREDICTED: similar to cell recognition molecule CAS... FLJ37512 0.482 PREDICTED: novel protein similar to contactin assoc... LOC389722 0.482 PREDICTED: hypothetical protein LOC389722 isoform 2... LOC389722 0.482 PREDICTED: hypothetical protein LOC389722 isoform 1... CNTNAP3 0.474 cell recognition molecule CASPR3 CNTNAP4 0.327 cell recognition protein CASPR4 isoform 2 CNTNAP4 0.327 cell recognition protein CASPR4 isoform 1 CNTNAP2 0.139 cell recognition molecule Caspr2 precursor CNTNAP5 0.124 contactin associated protein-like 5 CNTNAP1 0.032 contactin associated protein 1 precursor SLC15A1 0.016 solute carrier family 15 (oligopeptide transporter), ... DTNBP1 0.012 dystrobrevin binding protein 1 isoform b MTMR15 0.012 myotubularin related protein 15 isoform b MTMR15 0.012 myotubularin related protein 15 isoform b MTMR15 0.012 myotubularin related protein 15 isoform b MTMR15 0.012 myotubularin related protein 15 isoform a CRB1 0.012 crumbs homolog 1 precursor ZNF814 0.008 zinc finger protein 814 DSG2 0.008 desmoglein 2 preproprotein FAM171A1 0.008 hypothetical protein LOC221061 CCDC55 0.008 coiled-coil domain containing 55 isoform 1 EIF2A 0.004 eukaryotic translation initiation factor 2A Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.