Guide to the Human Genome
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Name: FLJ37512 Sequence: fasta or formatted (291aa) NCBI GI: 169184330
Description:

PREDICTED: novel protein similar to contactin associated protein-like 3 (CNTNAP3)

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         33           2
 C cysteine            1.7          5           1
 D aspartate           3.4         10           1
 E glutamate           6.2         18           2
 F phenylalanine       3.8         11           1
 G glycine             6.9         20           2
 H histidine           2.1          6           1
 I isoleucine          5.2         15           1
 K lysine              4.8         14           2
 L leucine             8.9         26           3
 M methionine          2.1          6           1
 N asparagine          3.4         10           2
 P proline             3.8         11           1
 Q glutamine           3.1          9           2
 R arginine            7.6         22           2
 S serine             10.0         29           3
 T threonine           5.5         16           2
 V valine              7.6         22           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: novel protein similar to contactin assoc... 
CNTNAP3               0.974   cell recognition molecule CASPR3 
LOC389722             0.972   PREDICTED: hypothetical protein LOC389722 isoform 2...
LOC389722             0.972   PREDICTED: hypothetical protein LOC389722 isoform 1...
CNTNAP4               0.576   cell recognition protein CASPR4 isoform 2 
CNTNAP4               0.576   cell recognition protein CASPR4 isoform 1 
LOC643827             0.491   PREDICTED: similar to cell recognition molecule CAS...
LOC389722             0.452   PREDICTED: similar to cell recognition molecule CAS...
CNTNAP5               0.319   contactin associated protein-like 5 
CNTNAP2               0.261   cell recognition molecule Caspr2 precursor 
LOC100294401          0.224   PREDICTED: similar to cell recognition molecule Cas...
CNTNAP1               0.144   contactin associated protein 1 precursor 
NRXN2                 0.028   neurexin 2 isoform alpha-1 precursor 
NRXN2                 0.028   neurexin 2 isoform alpha-2 precursor 
FAT1                  0.022   FAT tumor suppressor 1 precursor 
CADM1                 0.017   immunoglobulin superfamily, member 4D isoform 2 [Ho...
CADM1                 0.017   immunoglobulin superfamily, member 4D isoform 1 [Ho...
PTBP1                 0.015   polypyrimidine tract-binding protein 1 isoform a [Hom...
LAMA2                 0.015   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.015   laminin alpha 2 subunit isoform a precursor 
CRB1                  0.015   crumbs homolog 1 precursor 
ZSWIM5                0.013   zinc finger, SWIM domain containing 5 
FLJ39639              0.013   PREDICTED: hypothetical protein FLJ39639 
FLJ39639              0.013   PREDICTED: hypothetical protein FLJ39639 
FLJ39639              0.013   PREDICTED: hypothetical protein LOC283876 
TAF6L                 0.013   TAF6-like RNA polymerase II 
HOXA13                0.013   homeobox A13 
RTN4                  0.013   reticulon 4 isoform D 
LOC645321             0.011   PREDICTED: hypothetical protein 
LOC645321             0.011   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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