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Search of human proteins with 169180172
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169180172 PREDICTED: hypothetical protein [Homo sapiens]
(203 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169179781 PREDICTED: hypothetical protein [Homo sapiens] 407 e-114
gi|169180172 PREDICTED: hypothetical protein [Homo sapiens] 407 e-114
gi|169183867 PREDICTED: hypothetical protein [Homo sapiens] 404 e-113
gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo ... 36 0.026
gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo ... 35 0.034
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 35 0.044
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 35 0.057
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 35 0.057
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 34 0.075
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 34 0.075
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 34 0.097
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 34 0.097
gi|239756568 PREDICTED: similar to BCL2-associated transcription... 33 0.13
gi|169218320 PREDICTED: similar to BCL2-associated transcription... 33 0.13
gi|4557733 latent transforming growth factor beta binding protei... 33 0.22
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 33 0.22
gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2... 33 0.22
gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1... 33 0.22
gi|34013528 zinc finger protein 512B [Homo sapiens] 33 0.22
gi|117938254 BCL2-associated transcription factor 1 isoform 3 [H... 32 0.28
gi|117938251 BCL2-associated transcription factor 1 isoform 2 [H... 32 0.28
gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Hom... 32 0.28
gi|145199237 transcription elongation factor B polypeptide 3 bin... 32 0.28
gi|168229156 NFKB activating protein [Homo sapiens] 32 0.37
gi|239756877 PREDICTED: hypothetical protein [Homo sapiens] 32 0.37
gi|239751371 PREDICTED: hypothetical protein XP_002347821 [Homo ... 32 0.37
gi|239745880 PREDICTED: hypothetical protein XP_002343571 [Homo ... 32 0.37
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ... 32 0.37
gi|8922149 downstream neighbor of SON [Homo sapiens] 32 0.37
gi|28559065 DNA cytosine-5 methyltransferase 3 beta isoform 6 [H... 32 0.48
>gi|169179781 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 407 bits (1047), Expect = e-114
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE 60
MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE
Sbjct: 1 MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE 60
Query: 61 YCRECPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL 120
YCRECPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL
Sbjct: 61 YCRECPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL 120
Query: 121 SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA 180
SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA
Sbjct: 121 SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA 180
Query: 181 LDKFGVVFRPLLLAQRNSRLLKV 203
LDKFGVVFRPLLLAQRNSRLLKV
Sbjct: 181 LDKFGVVFRPLLLAQRNSRLLKV 203
>gi|169180172 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 407 bits (1047), Expect = e-114
Identities = 203/203 (100%), Positives = 203/203 (100%)
Query: 1 MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE 60
MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE
Sbjct: 1 MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE 60
Query: 61 YCRECPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL 120
YCRECPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL
Sbjct: 61 YCRECPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL 120
Query: 121 SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA 180
SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA
Sbjct: 121 SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA 180
Query: 181 LDKFGVVFRPLLLAQRNSRLLKV 203
LDKFGVVFRPLLLAQRNSRLLKV
Sbjct: 181 LDKFGVVFRPLLLAQRNSRLLKV 203
>gi|169183867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 404 bits (1039), Expect = e-113
Identities = 202/203 (99%), Positives = 202/203 (99%)
Query: 1 MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE 60
MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE
Sbjct: 1 MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE 60
Query: 61 YCRECPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL 120
YCRECPNASVLIREASTSGR GAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL
Sbjct: 61 YCRECPNASVLIREASTSGRRGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL 120
Query: 121 SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA 180
SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA
Sbjct: 121 SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA 180
Query: 181 LDKFGVVFRPLLLAQRNSRLLKV 203
LDKFGVVFRPLLLAQRNSRLLKV
Sbjct: 181 LDKFGVVFRPLLLAQRNSRLLKV 203
>gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo
sapiens]
Length = 326
Score = 35.8 bits (81), Expect = 0.026
Identities = 39/110 (35%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 65 CPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRP-RAAAAAHASTR-QLSQ 122
C AS I S GG GR ARA L KA GR R RP ++ A A A+ R S
Sbjct: 131 CFPASQQITNTERS-HGGDGRGVARASL-GDKAGAGRAGRGRPAQSPAEADAAARASKSL 188
Query: 123 RCMLSALSPASRPS-------------SSAGQRRAGSIESAGPGRPRVNP 159
+ + SAL P RP+ S R G GP RP P
Sbjct: 189 KLLSSALPPHLRPAAKTRAVAGPTAKESPPALRTVGDGPRPGPKRPDPAP 238
>gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo
sapiens]
Length = 224
Score = 35.4 bits (80), Expect = 0.034
Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 75 ASTSGRG--GAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPA 132
A GRG G G A RA A++ GR R R A A+ S + +PA
Sbjct: 59 ARGGGRGWEGGGLGARRAVTAARRGEWGRARESRSAALASPRVSN---------APTTPA 109
Query: 133 SRPSSSAGQRRAGSIESAGPGRPRVNP 159
SR Q R +AG G R P
Sbjct: 110 SRNPGLRAQERQSGRRAAGGGGARAEP 136
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 35.0 bits (79), Expect = 0.044
Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 73 REASTSGRGG----AGRNAARAHLPAKKASRGRT---RRRRPRAAAAAHASTRQLSQRCM 125
R +T GR A R +R+ PA++ SR RT RR R R A S + R
Sbjct: 565 RSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRR 624
Query: 126 LSALSPASRPSSSAGQ-RRAGSIESAGPGR 154
SP R S S RR+G S P R
Sbjct: 625 SRTRSPVRRRSRSRSPARRSGRSRSRTPAR 654
Score = 32.7 bits (73), Expect = 0.22
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 73 REASTSGRGGAGRNAARAHL----PAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSA 128
R S+S R R + R P K SR +RR R ++ + A +R LS R LS
Sbjct: 723 RSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSR-LSLRRSLSG 781
Query: 129 LSPASRPSSSAGQRRAGSIESAGPGRPRVNP 159
SP + S RR+ S S + R P
Sbjct: 782 SSPCPKQKSQTPPRRSRSGSSQPKAKSRTPP 812
Score = 32.3 bits (72), Expect = 0.28
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 73 REASTSGRGGAGRNAARAHLPAKKASRGRTR------RRRPRAAAAAHASTRQLSQRCML 126
R + R A R +R+ PA+++ R R+R R R R + +R L +R
Sbjct: 654 RRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRS 713
Query: 127 SALSPASR-PSSSAGQRRAGSIESAGPGRPRVNPVQKQ 163
+ +P R S S+ +R+ S S R +P K+
Sbjct: 714 HSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKK 751
Score = 30.8 bits (68), Expect = 0.83
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 71 LIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALS 130
L+R + R R R+ +++ ++ RT +RR R+ ++ ++S R S S
Sbjct: 707 LVRRGRSHSRTPQRRG--RSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSS 764
Query: 131 PASRPSSSAGQRRAGSIESAGPGRPRVNPVQK 162
P S+ S RR+ S S P + P ++
Sbjct: 765 PRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRR 796
Score = 29.6 bits (65), Expect = 1.8
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 85 RNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAGQRRA 144
R +R+ K SR RRR R++ R LS+R ++ SP +R + RR+
Sbjct: 1669 RRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKAR-LSRRSRSASSSPETRSRTPPRHRRS 1727
Query: 145 GSIESAGP 152
S+ S P
Sbjct: 1728 PSVSSPEP 1735
Score = 28.5 bits (62), Expect = 4.1
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 83 AGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAGQR 142
A + A R P + R RR +++++ +S+ S S+ S +S SSS+
Sbjct: 2585 APKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2644
Query: 143 RAGSIESAGPG 153
+ S A PG
Sbjct: 2645 SSSSPSPAKPG 2655
Score = 27.3 bits (59), Expect = 9.1
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 103 RRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRP 155
+R+R +++++ +S+ S S+ S +S SSS+ + S S P +P
Sbjct: 2602 KRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKP 2654
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 34.7 bits (78), Expect = 0.057
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 78 SGRGGAGRNAARAHLPAKKASRGRTRRR----------------RPRAAAAAHASTRQLS 121
SG G A AH+ ++K SR R+R R R +A+ + ++Q +
Sbjct: 113 SGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKA 172
Query: 122 QRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPR 156
+R S+ S +S SSS+ + S S+ GR +
Sbjct: 173 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKK 207
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 34.7 bits (78), Expect = 0.057
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 78 SGRGGAGRNAARAHLPAKKASRGRTRRR----------------RPRAAAAAHASTRQLS 121
SG G A AH+ ++K SR R+R R R +A+ + ++Q +
Sbjct: 113 SGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKA 172
Query: 122 QRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPR 156
+R S+ S +S SSS+ + S S+ GR +
Sbjct: 173 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKK 207
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 34.3 bits (77), Expect = 0.075
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 74 EASTSGRGGAGRNAARAHLPAKKASRGR-TRRRRPRAAAAAHASTRQLSQ 122
E G G + R+A A PA ++ R RRRRPRAAAA T Q S+
Sbjct: 150 EQKPRGPGRSARSAGAAAPPAGGLAQARQARRRRPRAAAALTGRTHQRSR 199
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 34.3 bits (77), Expect = 0.075
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 74 EASTSGRGGAGRNAARAHLPAKKASRGR-TRRRRPRAAAAAHASTRQLSQ 122
E G G + R+A A PA ++ R RRRRPRAAAA T Q S+
Sbjct: 150 EQKPRGPGRSARSAGAAAPPAGGLAQARQARRRRPRAAAALTGRTHQRSR 199
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 33.9 bits (76), Expect = 0.097
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 74 EASTSGRGGAGRNAARAHLPAKKASRGR-TRRRRPRAAAAAHASTRQLSQ 122
E G G + R+A A PA ++ R RRRRPRAAAA T Q S+
Sbjct: 150 EQRPRGPGRSARSAGAAAPPAGGLAQARQARRRRPRAAAALTGRTHQRSR 199
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 33.9 bits (76), Expect = 0.097
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 58 PVEYCRECPNASVLIREASTSGRGGAGRNAARAHLPAK--KASRGRTRRRRPRAAAAAHA 115
P + C EC + R R+ +R+H ++ + SR R+R R R+ +A+
Sbjct: 102 PNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPR 161
Query: 116 STRQLSQRCMLSALSPASRPSSSAGQR 142
+R +S R SA SR S G R
Sbjct: 162 RSRSISLRRSRSASLRRSRSGSIKGSR 188
>gi|239756568 PREDICTED: similar to BCL2-associated transcription
factor 1 [Homo sapiens]
Length = 869
Score = 33.5 bits (75), Expect = 0.13
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 60 EYCRECPNASVLIREASTSGRG------GAGRNAARAHLP------AKKASRGRTRRRRP 107
+Y R+ N + R GRG G GR + P ++ RGR+R R P
Sbjct: 54 DYRRDYRNNRAMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSP 113
Query: 108 RAAAAAHASTRQLSQRCMLSALSPASRPSSSA 139
+ + + +R S+R S+ SP S S S+
Sbjct: 114 KRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSS 145
>gi|169218320 PREDICTED: similar to BCL2-associated transcription
factor 1 isoform 2 [Homo sapiens]
Length = 869
Score = 33.5 bits (75), Expect = 0.13
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 60 EYCRECPNASVLIREASTSGRG------GAGRNAARAHLP------AKKASRGRTRRRRP 107
+Y R+ N + R GRG G GR + P ++ RGR+R R P
Sbjct: 54 DYRRDYRNNRAMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSP 113
Query: 108 RAAAAAHASTRQLSQRCMLSALSPASRPSSSA 139
+ + + +R S+R S+ SP S S S+
Sbjct: 114 KRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSS 145
>gi|4557733 latent transforming growth factor beta binding protein 2
[Homo sapiens]
Length = 1821
Score = 32.7 bits (73), Expect = 0.22
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 11/142 (7%)
Query: 58 PVEYCRECPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHAST 117
P + PN +R +S +G G ARA PA ++ + P A + S
Sbjct: 236 PRRWAERSPN----LRRSSAAGEG----TLARAQPPAPQSPPAP---QSPPAGTLSGLSQ 284
Query: 118 RQLSQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWK 177
SQ+ + + + P+++A + + + GPG + + Q+ + L ++ W
Sbjct: 285 THPSQQHVGLSRTVRLHPTATASSQLSSNALPPGPGLEQRDGTQQAVPLEHPSSPWGLNL 344
Query: 178 DDALDKFGVVFRPLLLAQRNSR 199
+ + K +VF P + Q +R
Sbjct: 345 TEKIKKIKIVFTPTICKQTCAR 366
Score = 30.8 bits (68), Expect = 0.83
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 93 PAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAGQRRAGSIESAGP 152
P ++A G RRP A A S Q S+R A +R S+ GQ++ A P
Sbjct: 84 PVERAQPGWGSPRRPTEAEARRPSRAQQSRRVQPPA---QTRRSTPLGQQQPAPRTRAAP 140
Query: 153 GRPRVNPVQK 162
PR+ Q+
Sbjct: 141 ALPRLGTPQR 150
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 32.7 bits (73), Expect = 0.22
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 73 REASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPA 132
R + + RGGA R A P ++A+R R ++ A S S R + +PA
Sbjct: 123 RAVTAARRGGASRPLAGE--PWREAARRRPQQCPQWGRARESRSAALASPRVSNAPTTPA 180
Query: 133 SRPSSSAGQRRAGSIESAGPGRPRVNP 159
SR Q R +AG G R P
Sbjct: 181 SRNPGLRAQERQSGRRAAGGGGARAEP 207
>gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2
[Homo sapiens]
Length = 1481
Score = 32.7 bits (73), Expect = 0.22
Identities = 15/55 (27%), Positives = 33/55 (60%)
Query: 85 RNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSA 139
R+ +R+ LP++K+ + R+R +++H+ ++ S R S++SP P +S+
Sbjct: 340 RSLSRSPLPSRKSMKSRSRSPAYSRHSSSHSKKKRSSSRSRHSSISPVRLPLNSS 394
>gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1
[Homo sapiens]
Length = 1490
Score = 32.7 bits (73), Expect = 0.22
Identities = 15/55 (27%), Positives = 33/55 (60%)
Query: 85 RNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSA 139
R+ +R+ LP++K+ + R+R +++H+ ++ S R S++SP P +S+
Sbjct: 340 RSLSRSPLPSRKSMKSRSRSPAYSRHSSSHSKKKRSSSRSRHSSISPVRLPLNSS 394
>gi|34013528 zinc finger protein 512B [Homo sapiens]
Length = 892
Score = 32.7 bits (73), Expect = 0.22
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 18/122 (14%)
Query: 54 TFRRPVEYCRECPNAS-VLIREASTSGRGGAGRNAARAH---------LPAKKASRGRTR 103
T RP+ R P VL+ + GRN+ + +P K+A R
Sbjct: 307 TVSRPIAISRHTPPCKMVLLTRSENKAPRATGRNSGKKRAADSLDTCPIPPKQA---RPE 363
Query: 104 RRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQ 163
++ +S QLS +LSP SRPS ++++AGP P ++
Sbjct: 364 NGEYGPSSMGQSSAFQLSADTSSGSLSPGSRPSGG-----MEALKAAGPASPPEEDPERT 418
Query: 164 LH 165
H
Sbjct: 419 KH 420
>gi|117938254 BCL2-associated transcription factor 1 isoform 3 [Homo
sapiens]
Length = 747
Score = 32.3 bits (72), Expect = 0.28
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 80 RGGAGRNAARAHLP------AKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPAS 133
+GG GR + P ++ RGR+R R P+ + + +R S+R S+ SP S
Sbjct: 82 QGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRS 141
Query: 134 RPSSSA 139
S S+
Sbjct: 142 SSSRSS 147
>gi|117938251 BCL2-associated transcription factor 1 isoform 2 [Homo
sapiens]
Length = 869
Score = 32.3 bits (72), Expect = 0.28
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 80 RGGAGRNAARAHLP------AKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPAS 133
+GG GR + P ++ RGR+R R P+ + + +R S+R S+ SP S
Sbjct: 80 QGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRS 139
Query: 134 RPSSSA 139
S S+
Sbjct: 140 SSSRSS 145
>gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Homo
sapiens]
Length = 920
Score = 32.3 bits (72), Expect = 0.28
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 80 RGGAGRNAARAHLP------AKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPAS 133
+GG GR + P ++ RGR+R R P+ + + +R S+R S+ SP S
Sbjct: 82 QGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRS 141
Query: 134 RPSSSA 139
S S+
Sbjct: 142 SSSRSS 147
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 32.3 bits (72), Expect = 0.28
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 83 AGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAGQR 142
A + +A P +KA R +++P +A S + R PA RPS ++G
Sbjct: 413 ADKKGPQASSPRRKAERPEGTKKKPSSATPVATSGKGRPDR-------PARRPSPTSGDS 465
Query: 143 RAGSIESAGPGRPRVNPVQK 162
R + GP RP P +K
Sbjct: 466 RPAA--GRGPPRPLQLPDRK 483
>gi|168229156 NFKB activating protein [Homo sapiens]
Length = 415
Score = 32.0 bits (71), Expect = 0.37
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 74 EASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPAS 133
+ SG GG R+++++ P+K A R RR R + + + Q L LS S
Sbjct: 11 DREASGSGGRRRSSSKSPKPSKSARSPRGRRSRSHSCSRSGDRNGLTHQ---LGGLSQGS 67
Query: 134 RPSSSAGQRRAGSIESAGPGRPRVNP 159
R S + R+ S E P PR P
Sbjct: 68 RNQSYRSRSRSRSRER--PSAPRGIP 91
>gi|239756877 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 32.0 bits (71), Expect = 0.37
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 82 GAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSS-SAG 140
G R+A +H + + G RRR PR A + R C + SP R S SA
Sbjct: 33 GTPRSAQSSHPGSSRRRSGTRRRRPPRTAPTCSGAPRTRCTACTARSRSPRRRTSRLSAA 92
Query: 141 QRRAGSIESAGPG 153
R + PG
Sbjct: 93 DTRFSRLLFWAPG 105
>gi|239751371 PREDICTED: hypothetical protein XP_002347821 [Homo
sapiens]
Length = 140
Score = 32.0 bits (71), Expect = 0.37
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 82 GAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSS-SAG 140
G R+A +H + + G RRR PR A + R C + SP R S SA
Sbjct: 33 GTPRSAQSSHPGSSRRRSGTRRRRPPRTAPTCSGAPRTRCTACTARSRSPRRRTSRLSAA 92
Query: 141 QRRAGSIESAGPG 153
R + PG
Sbjct: 93 DTRFSRLLFWAPG 105
>gi|239745880 PREDICTED: hypothetical protein XP_002343571 [Homo
sapiens]
Length = 140
Score = 32.0 bits (71), Expect = 0.37
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 82 GAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSS-SAG 140
G R+A +H + + G RRR PR A + R C + SP R S SA
Sbjct: 33 GTPRSAQSSHPGSSRRRSGTRRRRPPRTAPTCSGAPRTRCTACTARSRSPRRRTSRLSAA 92
Query: 141 QRRAGSIESAGPG 153
R + PG
Sbjct: 93 DTRFSRLLFWAPG 105
>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
sapiens]
Length = 306
Score = 32.0 bits (71), Expect = 0.37
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 81 GGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAG 140
GG G+ P+++ + G +RR R++ +A +Q +Q A P RP+ G
Sbjct: 204 GGTGQRRGSRSSPSRQPAGGTGQRRGSRSSPSAD---QQRAQDREEEAAQPQRRPAGGTG 260
Query: 141 QRR 143
QRR
Sbjct: 261 QRR 263
>gi|8922149 downstream neighbor of SON [Homo sapiens]
Length = 566
Score = 32.0 bits (71), Expect = 0.37
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 101 RTRRRRPRAAAAAHASTRQLSQ----RCMLSALSPASRPSSSAGQRRAGSIESAGPGRPR 156
R RR+R R+ AA + R+L++ R L A P RP +AG R GS GP R
Sbjct: 20 RLRRKRARSRGAAASPPRELTEPAARRAALVAGLPL-RPFPAAGGRGGGS--GGGPAAAR 76
Query: 157 VNP 159
NP
Sbjct: 77 RNP 79
>gi|28559065 DNA cytosine-5 methyltransferase 3 beta isoform 6 [Homo
sapiens]
Length = 845
Score = 31.6 bits (70), Expect = 0.48
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 64 ECPNASVLIREASTSGRGGAGR-------NAARAHLPAKKASRGRTRRRRPRAAAAAHAS 116
+ P L RE T A R ++ H P+ +++RGR R + +
Sbjct: 95 DTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPSPRSTRGRQGRNHVDESPVEFPA 154
Query: 117 TRQLSQRCMLSALSPASRPSSS 138
TR L +R SA +P P SS
Sbjct: 155 TRSLRRRATASAGTPWPSPPSS 176
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.130 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,861,648
Number of Sequences: 37866
Number of extensions: 348193
Number of successful extensions: 2440
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 2200
Number of HSP's gapped (non-prelim): 355
length of query: 203
length of database: 18,247,518
effective HSP length: 97
effective length of query: 106
effective length of database: 14,574,516
effective search space: 1544898696
effective search space used: 1544898696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.