Guide to the Human Genome
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Name: LOC100128556 Sequence: fasta or formatted (203aa) NCBI GI: 169180172
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {203aa} PREDICTED: hypothetical protein
alt prot {203aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         28           5
 C cysteine            2.0          4           1
 D aspartate           3.0          6           2
 E glutamate           3.4          7           1
 F phenylalanine       3.4          7           1
 G glycine             6.4         13           2
 H histidine           3.0          6           1
 I isoleucine          2.5          5           1
 K lysine              3.9          8           2
 L leucine             8.9         18           3
 M methionine          1.5          3           1
 N asparagine          3.0          6           1
 P proline             5.4         11           1
 Q glutamine           4.9         10           1
 R arginine           12.8         26           4
 S serine             10.8         22           3
 T threonine           3.0          6           1
 V valine              5.4         11           2
 W tryptophan          2.0          4           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128556          1.000   PREDICTED: hypothetical protein 
LOC100128556          0.992   PREDICTED: hypothetical protein 
LOC100289949          0.029   PREDICTED: hypothetical protein XP_002346877 
LOC100287063          0.026   PREDICTED: hypothetical protein XP_002342368 
SRRM2                 0.026   splicing coactivator subunit SRm300 
ARL6IP4               0.026   SRp25 nuclear protein isoform 4 
ARL6IP4               0.026   SRp25 nuclear protein isoform 2 
LOC100132234          0.024   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.024   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.024   PREDICTED: hypothetical protein LOC100132234 
SFRS7                 0.024   splicing factor, arginine/serine-rich 7 
LOC731605             0.021   PREDICTED: similar to BCL2-associated transcription...
LOC731605             0.021   PREDICTED: similar to BCL2-associated transcription...
LTBP2                 0.021   latent transforming growth factor beta binding protei...
LOC100287063          0.021   PREDICTED: hypothetical protein 
CRKRS                 0.021   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.021   Cdc2-related kinase, arginine/serine-rich isoform 1...
ZNF512B               0.021   zinc finger protein 512B 
BCLAF1                0.018   BCL2-associated transcription factor 1 isoform 3 [H...
BCLAF1                0.018   BCL2-associated transcription factor 1 isoform 2 [H...
BCLAF1                0.018   BCL2-associated transcription factor 1 isoform 1 [Hom...
REXO1                 0.018   transcription elongation factor B polypeptide 3 bin...
NKAP                  0.018   NFKB activating protein 
LOC100292592          0.018   PREDICTED: hypothetical protein 
LOC100289939          0.018   PREDICTED: hypothetical protein XP_002347821 
LOC100288866          0.018   PREDICTED: hypothetical protein XP_002343571 
LOC100288496          0.018   PREDICTED: hypothetical protein XP_002342747 
DONSON                0.018   downstream neighbor of SON 
DNMT3B                0.018   DNA cytosine-5 methyltransferase 3 beta isoform 6 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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