Guide to the Human Genome
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Search of human proteins with 169179781

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169179781 PREDICTED: hypothetical protein [Homo sapiens]
         (203 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169179781 PREDICTED: hypothetical protein [Homo sapiens]           407   e-114
gi|169180172 PREDICTED: hypothetical protein [Homo sapiens]           407   e-114
gi|169183867 PREDICTED: hypothetical protein [Homo sapiens]           404   e-113
gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo ...    36   0.026
gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo ...    35   0.034
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        35   0.044
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]             35   0.057
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]             35   0.057
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ...    34   0.075
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ...    34   0.075
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ...    34   0.097
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]     34   0.097
gi|239756568 PREDICTED: similar to BCL2-associated transcription...    33   0.13 
gi|169218320 PREDICTED: similar to BCL2-associated transcription...    33   0.13 
gi|4557733 latent transforming growth factor beta binding protei...    33   0.22 
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]            33   0.22 
gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2...    33   0.22 
gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1...    33   0.22 
gi|34013528 zinc finger protein 512B [Homo sapiens]                    33   0.22 
gi|117938254 BCL2-associated transcription factor 1 isoform 3 [H...    32   0.28 
gi|117938251 BCL2-associated transcription factor 1 isoform 2 [H...    32   0.28 
gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Hom...    32   0.28 
gi|145199237 transcription elongation factor B polypeptide 3 bin...    32   0.28 
gi|168229156 NFKB activating protein [Homo sapiens]                    32   0.37 
gi|239756877 PREDICTED: hypothetical protein [Homo sapiens]            32   0.37 
gi|239751371 PREDICTED: hypothetical protein XP_002347821 [Homo ...    32   0.37 
gi|239745880 PREDICTED: hypothetical protein XP_002343571 [Homo ...    32   0.37 
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ...    32   0.37 
gi|8922149 downstream neighbor of SON [Homo sapiens]                   32   0.37 
gi|28559065 DNA cytosine-5 methyltransferase 3 beta isoform 6 [H...    32   0.48 

>gi|169179781 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 203

 Score =  407 bits (1047), Expect = e-114
 Identities = 203/203 (100%), Positives = 203/203 (100%)

Query: 1   MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE 60
           MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE
Sbjct: 1   MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE 60

Query: 61  YCRECPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL 120
           YCRECPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL
Sbjct: 61  YCRECPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL 120

Query: 121 SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA 180
           SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA
Sbjct: 121 SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA 180

Query: 181 LDKFGVVFRPLLLAQRNSRLLKV 203
           LDKFGVVFRPLLLAQRNSRLLKV
Sbjct: 181 LDKFGVVFRPLLLAQRNSRLLKV 203


>gi|169180172 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 203

 Score =  407 bits (1047), Expect = e-114
 Identities = 203/203 (100%), Positives = 203/203 (100%)

Query: 1   MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE 60
           MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE
Sbjct: 1   MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE 60

Query: 61  YCRECPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL 120
           YCRECPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL
Sbjct: 61  YCRECPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL 120

Query: 121 SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA 180
           SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA
Sbjct: 121 SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA 180

Query: 181 LDKFGVVFRPLLLAQRNSRLLKV 203
           LDKFGVVFRPLLLAQRNSRLLKV
Sbjct: 181 LDKFGVVFRPLLLAQRNSRLLKV 203


>gi|169183867 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 203

 Score =  404 bits (1039), Expect = e-113
 Identities = 202/203 (99%), Positives = 202/203 (99%)

Query: 1   MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE 60
           MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE
Sbjct: 1   MHIKAFRTAGCLNSLRDEVAAAKSGLHDSPAFLLEMGDQYSQETVHSQSWVIWTFRRPVE 60

Query: 61  YCRECPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL 120
           YCRECPNASVLIREASTSGR GAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL
Sbjct: 61  YCRECPNASVLIREASTSGRRGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQL 120

Query: 121 SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA 180
           SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA
Sbjct: 121 SQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWKDDA 180

Query: 181 LDKFGVVFRPLLLAQRNSRLLKV 203
           LDKFGVVFRPLLLAQRNSRLLKV
Sbjct: 181 LDKFGVVFRPLLLAQRNSRLLKV 203


>gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo
           sapiens]
          Length = 326

 Score = 35.8 bits (81), Expect = 0.026
 Identities = 39/110 (35%), Positives = 45/110 (40%), Gaps = 17/110 (15%)

Query: 65  CPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRP-RAAAAAHASTR-QLSQ 122
           C  AS  I     S  GG GR  ARA L   KA  GR  R RP ++ A A A+ R   S 
Sbjct: 131 CFPASQQITNTERS-HGGDGRGVARASL-GDKAGAGRAGRGRPAQSPAEADAAARASKSL 188

Query: 123 RCMLSALSPASRPS-------------SSAGQRRAGSIESAGPGRPRVNP 159
           + + SAL P  RP+             S    R  G     GP RP   P
Sbjct: 189 KLLSSALPPHLRPAAKTRAVAGPTAKESPPALRTVGDGPRPGPKRPDPAP 238


>gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo
           sapiens]
          Length = 224

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 11/87 (12%)

Query: 75  ASTSGRG--GAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPA 132
           A   GRG  G G  A RA   A++   GR R  R  A A+   S          +  +PA
Sbjct: 59  ARGGGRGWEGGGLGARRAVTAARRGEWGRARESRSAALASPRVSN---------APTTPA 109

Query: 133 SRPSSSAGQRRAGSIESAGPGRPRVNP 159
           SR      Q R     +AG G  R  P
Sbjct: 110 SRNPGLRAQERQSGRRAAGGGGARAEP 136


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 35.0 bits (79), Expect = 0.044
 Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 73  REASTSGRGG----AGRNAARAHLPAKKASRGRT---RRRRPRAAAAAHASTRQLSQRCM 125
           R  +T GR      A R  +R+  PA++ SR RT   RR R R  A    S  +   R  
Sbjct: 565 RSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRR 624

Query: 126 LSALSPASRPSSSAGQ-RRAGSIESAGPGR 154
               SP  R S S    RR+G   S  P R
Sbjct: 625 SRTRSPVRRRSRSRSPARRSGRSRSRTPAR 654



 Score = 32.7 bits (73), Expect = 0.22
 Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 73  REASTSGRGGAGRNAARAHL----PAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSA 128
           R  S+S R    R + R       P  K SR  +RR R  ++  + A +R LS R  LS 
Sbjct: 723 RSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSR-LSLRRSLSG 781

Query: 129 LSPASRPSSSAGQRRAGSIESAGPGRPRVNP 159
            SP  +  S    RR+ S  S    + R  P
Sbjct: 782 SSPCPKQKSQTPPRRSRSGSSQPKAKSRTPP 812



 Score = 32.3 bits (72), Expect = 0.28
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 73  REASTSGRGGAGRNAARAHLPAKKASRGRTR------RRRPRAAAAAHASTRQLSQRCML 126
           R   +  R  A R  +R+  PA+++ R R+R      R R R      + +R L +R   
Sbjct: 654 RRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRS 713

Query: 127 SALSPASR-PSSSAGQRRAGSIESAGPGRPRVNPVQKQ 163
            + +P  R  S S+ +R+  S  S    R   +P  K+
Sbjct: 714 HSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKK 751



 Score = 30.8 bits (68), Expect = 0.83
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 71  LIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALS 130
           L+R   +  R    R   R+   +++ ++ RT +RR R+ ++      ++S R   S  S
Sbjct: 707 LVRRGRSHSRTPQRRG--RSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSS 764

Query: 131 PASRPSSSAGQRRAGSIESAGPGRPRVNPVQK 162
           P S+  S    RR+ S  S  P +    P ++
Sbjct: 765 PRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRR 796



 Score = 29.6 bits (65), Expect = 1.8
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 85   RNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAGQRRA 144
            R  +R+    K  SR   RRR  R++       R LS+R   ++ SP +R  +    RR+
Sbjct: 1669 RRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKAR-LSRRSRSASSSPETRSRTPPRHRRS 1727

Query: 145  GSIESAGP 152
             S+ S  P
Sbjct: 1728 PSVSSPEP 1735



 Score = 28.5 bits (62), Expect = 4.1
 Identities = 19/71 (26%), Positives = 32/71 (45%)

Query: 83   AGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAGQR 142
            A + A R   P +     R RR    +++++ +S+   S     S+ S +S  SSS+   
Sbjct: 2585 APKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2644

Query: 143  RAGSIESAGPG 153
             + S   A PG
Sbjct: 2645 SSSSPSPAKPG 2655



 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 103  RRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRP 155
            +R+R  +++++ +S+   S     S+ S +S  SSS+    + S  S  P +P
Sbjct: 2602 KRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKP 2654


>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
          Length = 338

 Score = 34.7 bits (78), Expect = 0.057
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 16/95 (16%)

Query: 78  SGRGGAGRNAARAHLPAKKASRGRTRRR----------------RPRAAAAAHASTRQLS 121
           SG  G     A AH+ ++K SR R+R R                R  +A+ +   ++Q +
Sbjct: 113 SGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKA 172

Query: 122 QRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPR 156
           +R   S+ S +S  SSS+    + S  S+  GR +
Sbjct: 173 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKK 207


>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
          Length = 341

 Score = 34.7 bits (78), Expect = 0.057
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 16/95 (16%)

Query: 78  SGRGGAGRNAARAHLPAKKASRGRTRRR----------------RPRAAAAAHASTRQLS 121
           SG  G     A AH+ ++K SR R+R R                R  +A+ +   ++Q +
Sbjct: 113 SGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKA 172

Query: 122 QRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPR 156
           +R   S+ S +S  SSS+    + S  S+  GR +
Sbjct: 173 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKK 207


>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
           sapiens]
          Length = 202

 Score = 34.3 bits (77), Expect = 0.075
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 74  EASTSGRGGAGRNAARAHLPAKKASRGR-TRRRRPRAAAAAHASTRQLSQ 122
           E    G G + R+A  A  PA   ++ R  RRRRPRAAAA    T Q S+
Sbjct: 150 EQKPRGPGRSARSAGAAAPPAGGLAQARQARRRRPRAAAALTGRTHQRSR 199


>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
           sapiens]
          Length = 202

 Score = 34.3 bits (77), Expect = 0.075
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 74  EASTSGRGGAGRNAARAHLPAKKASRGR-TRRRRPRAAAAAHASTRQLSQ 122
           E    G G + R+A  A  PA   ++ R  RRRRPRAAAA    T Q S+
Sbjct: 150 EQKPRGPGRSARSAGAAAPPAGGLAQARQARRRRPRAAAALTGRTHQRSR 199


>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
           sapiens]
          Length = 202

 Score = 33.9 bits (76), Expect = 0.097
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 74  EASTSGRGGAGRNAARAHLPAKKASRGR-TRRRRPRAAAAAHASTRQLSQ 122
           E    G G + R+A  A  PA   ++ R  RRRRPRAAAA    T Q S+
Sbjct: 150 EQRPRGPGRSARSAGAAAPPAGGLAQARQARRRRPRAAAALTGRTHQRSR 199


>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
          Length = 238

 Score = 33.9 bits (76), Expect = 0.097
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 58  PVEYCRECPNASVLIREASTSGRGGAGRNAARAHLPAK--KASRGRTRRRRPRAAAAAHA 115
           P + C EC        +     R    R+ +R+H  ++  + SR R+R R  R+ +A+  
Sbjct: 102 PNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASPR 161

Query: 116 STRQLSQRCMLSALSPASRPSSSAGQR 142
            +R +S R   SA    SR  S  G R
Sbjct: 162 RSRSISLRRSRSASLRRSRSGSIKGSR 188


>gi|239756568 PREDICTED: similar to BCL2-associated transcription
           factor 1 [Homo sapiens]
          Length = 869

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 12/92 (13%)

Query: 60  EYCRECPNASVLIREASTSGRG------GAGRNAARAHLP------AKKASRGRTRRRRP 107
           +Y R+  N   + R     GRG      G GR     + P      ++   RGR+R R P
Sbjct: 54  DYRRDYRNNRAMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSP 113

Query: 108 RAAAAAHASTRQLSQRCMLSALSPASRPSSSA 139
           +  + +   +R  S+R   S+ SP S  S S+
Sbjct: 114 KRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSS 145


>gi|169218320 PREDICTED: similar to BCL2-associated transcription
           factor 1 isoform 2 [Homo sapiens]
          Length = 869

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 12/92 (13%)

Query: 60  EYCRECPNASVLIREASTSGRG------GAGRNAARAHLP------AKKASRGRTRRRRP 107
           +Y R+  N   + R     GRG      G GR     + P      ++   RGR+R R P
Sbjct: 54  DYRRDYRNNRAMRRPYGYRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSP 113

Query: 108 RAAAAAHASTRQLSQRCMLSALSPASRPSSSA 139
           +  + +   +R  S+R   S+ SP S  S S+
Sbjct: 114 KRRSVSSQRSRSRSRRSYRSSRSPRSSSSRSS 145


>gi|4557733 latent transforming growth factor beta binding protein 2
           [Homo sapiens]
          Length = 1821

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 11/142 (7%)

Query: 58  PVEYCRECPNASVLIREASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHAST 117
           P  +    PN    +R +S +G G      ARA  PA ++       + P A   +  S 
Sbjct: 236 PRRWAERSPN----LRRSSAAGEG----TLARAQPPAPQSPPAP---QSPPAGTLSGLSQ 284

Query: 118 RQLSQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQLHLVIQANFWSFWK 177
              SQ+ +  + +    P+++A  + + +    GPG  + +  Q+ + L   ++ W    
Sbjct: 285 THPSQQHVGLSRTVRLHPTATASSQLSSNALPPGPGLEQRDGTQQAVPLEHPSSPWGLNL 344

Query: 178 DDALDKFGVVFRPLLLAQRNSR 199
            + + K  +VF P +  Q  +R
Sbjct: 345 TEKIKKIKIVFTPTICKQTCAR 366



 Score = 30.8 bits (68), Expect = 0.83
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 93  PAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAGQRRAGSIESAGP 152
           P ++A  G    RRP  A A   S  Q S+R    A    +R S+  GQ++      A P
Sbjct: 84  PVERAQPGWGSPRRPTEAEARRPSRAQQSRRVQPPA---QTRRSTPLGQQQPAPRTRAAP 140

Query: 153 GRPRVNPVQK 162
             PR+   Q+
Sbjct: 141 ALPRLGTPQR 150


>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 295

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 73  REASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPA 132
           R  + + RGGA R  A    P ++A+R R ++      A    S    S R   +  +PA
Sbjct: 123 RAVTAARRGGASRPLAGE--PWREAARRRPQQCPQWGRARESRSAALASPRVSNAPTTPA 180

Query: 133 SRPSSSAGQRRAGSIESAGPGRPRVNP 159
           SR      Q R     +AG G  R  P
Sbjct: 181 SRNPGLRAQERQSGRRAAGGGGARAEP 207


>gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2
           [Homo sapiens]
          Length = 1481

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 15/55 (27%), Positives = 33/55 (60%)

Query: 85  RNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSA 139
           R+ +R+ LP++K+ + R+R       +++H+  ++ S R   S++SP   P +S+
Sbjct: 340 RSLSRSPLPSRKSMKSRSRSPAYSRHSSSHSKKKRSSSRSRHSSISPVRLPLNSS 394


>gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1
           [Homo sapiens]
          Length = 1490

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 15/55 (27%), Positives = 33/55 (60%)

Query: 85  RNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSA 139
           R+ +R+ LP++K+ + R+R       +++H+  ++ S R   S++SP   P +S+
Sbjct: 340 RSLSRSPLPSRKSMKSRSRSPAYSRHSSSHSKKKRSSSRSRHSSISPVRLPLNSS 394


>gi|34013528 zinc finger protein 512B [Homo sapiens]
          Length = 892

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 18/122 (14%)

Query: 54  TFRRPVEYCRECPNAS-VLIREASTSGRGGAGRNAARAH---------LPAKKASRGRTR 103
           T  RP+   R  P    VL+  +        GRN+ +           +P K+A   R  
Sbjct: 307 TVSRPIAISRHTPPCKMVLLTRSENKAPRATGRNSGKKRAADSLDTCPIPPKQA---RPE 363

Query: 104 RRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAGQRRAGSIESAGPGRPRVNPVQKQ 163
                 ++   +S  QLS      +LSP SRPS         ++++AGP  P     ++ 
Sbjct: 364 NGEYGPSSMGQSSAFQLSADTSSGSLSPGSRPSGG-----MEALKAAGPASPPEEDPERT 418

Query: 164 LH 165
            H
Sbjct: 419 KH 420


>gi|117938254 BCL2-associated transcription factor 1 isoform 3 [Homo
           sapiens]
          Length = 747

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 80  RGGAGRNAARAHLP------AKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPAS 133
           +GG GR     + P      ++   RGR+R R P+  + +   +R  S+R   S+ SP S
Sbjct: 82  QGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRS 141

Query: 134 RPSSSA 139
             S S+
Sbjct: 142 SSSRSS 147


>gi|117938251 BCL2-associated transcription factor 1 isoform 2 [Homo
           sapiens]
          Length = 869

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 80  RGGAGRNAARAHLP------AKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPAS 133
           +GG GR     + P      ++   RGR+R R P+  + +   +R  S+R   S+ SP S
Sbjct: 80  QGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRS 139

Query: 134 RPSSSA 139
             S S+
Sbjct: 140 SSSRSS 145


>gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Homo
           sapiens]
          Length = 920

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 80  RGGAGRNAARAHLP------AKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPAS 133
           +GG GR     + P      ++   RGR+R R P+  + +   +R  S+R   S+ SP S
Sbjct: 82  QGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRS 141

Query: 134 RPSSSA 139
             S S+
Sbjct: 142 SSSRSS 147


>gi|145199237 transcription elongation factor B polypeptide 3
           binding protein 1 [Homo sapiens]
          Length = 1221

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 9/80 (11%)

Query: 83  AGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAGQR 142
           A +   +A  P +KA R    +++P +A     S +    R       PA RPS ++G  
Sbjct: 413 ADKKGPQASSPRRKAERPEGTKKKPSSATPVATSGKGRPDR-------PARRPSPTSGDS 465

Query: 143 RAGSIESAGPGRPRVNPVQK 162
           R  +    GP RP   P +K
Sbjct: 466 RPAA--GRGPPRPLQLPDRK 483


>gi|168229156 NFKB activating protein [Homo sapiens]
          Length = 415

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 74  EASTSGRGGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPAS 133
           +   SG GG  R+++++  P+K A   R RR R  + + +        Q   L  LS  S
Sbjct: 11  DREASGSGGRRRSSSKSPKPSKSARSPRGRRSRSHSCSRSGDRNGLTHQ---LGGLSQGS 67

Query: 134 RPSSSAGQRRAGSIESAGPGRPRVNP 159
           R  S   + R+ S E   P  PR  P
Sbjct: 68  RNQSYRSRSRSRSRER--PSAPRGIP 91


>gi|239756877 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 140

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 82  GAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSS-SAG 140
           G  R+A  +H  + +   G  RRR PR A     + R     C   + SP  R S  SA 
Sbjct: 33  GTPRSAQSSHPGSSRRRSGTRRRRPPRTAPTCSGAPRTRCTACTARSRSPRRRTSRLSAA 92

Query: 141 QRRAGSIESAGPG 153
             R   +    PG
Sbjct: 93  DTRFSRLLFWAPG 105


>gi|239751371 PREDICTED: hypothetical protein XP_002347821 [Homo
           sapiens]
          Length = 140

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 82  GAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSS-SAG 140
           G  R+A  +H  + +   G  RRR PR A     + R     C   + SP  R S  SA 
Sbjct: 33  GTPRSAQSSHPGSSRRRSGTRRRRPPRTAPTCSGAPRTRCTACTARSRSPRRRTSRLSAA 92

Query: 141 QRRAGSIESAGPG 153
             R   +    PG
Sbjct: 93  DTRFSRLLFWAPG 105


>gi|239745880 PREDICTED: hypothetical protein XP_002343571 [Homo
           sapiens]
          Length = 140

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 82  GAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSS-SAG 140
           G  R+A  +H  + +   G  RRR PR A     + R     C   + SP  R S  SA 
Sbjct: 33  GTPRSAQSSHPGSSRRRSGTRRRRPPRTAPTCSGAPRTRCTACTARSRSPRRRTSRLSAA 92

Query: 141 QRRAGSIESAGPG 153
             R   +    PG
Sbjct: 93  DTRFSRLLFWAPG 105


>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
           sapiens]
          Length = 306

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 81  GGAGRNAARAHLPAKKASRGRTRRRRPRAAAAAHASTRQLSQRCMLSALSPASRPSSSAG 140
           GG G+       P+++ + G  +RR  R++ +A    +Q +Q     A  P  RP+   G
Sbjct: 204 GGTGQRRGSRSSPSRQPAGGTGQRRGSRSSPSAD---QQRAQDREEEAAQPQRRPAGGTG 260

Query: 141 QRR 143
           QRR
Sbjct: 261 QRR 263


>gi|8922149 downstream neighbor of SON [Homo sapiens]
          Length = 566

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 101 RTRRRRPRAAAAAHASTRQLSQ----RCMLSALSPASRPSSSAGQRRAGSIESAGPGRPR 156
           R RR+R R+  AA +  R+L++    R  L A  P  RP  +AG R  GS    GP   R
Sbjct: 20  RLRRKRARSRGAAASPPRELTEPAARRAALVAGLPL-RPFPAAGGRGGGS--GGGPAAAR 76

Query: 157 VNP 159
            NP
Sbjct: 77  RNP 79


>gi|28559065 DNA cytosine-5 methyltransferase 3 beta isoform 6 [Homo
           sapiens]
          Length = 845

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 64  ECPNASVLIREASTSGRGGAGR-------NAARAHLPAKKASRGRTRRRRPRAAAAAHAS 116
           + P    L RE  T     A R       ++   H P+ +++RGR  R     +     +
Sbjct: 95  DTPVMPKLFRETRTRSESPAVRTRNNNSVSSRERHRPSPRSTRGRQGRNHVDESPVEFPA 154

Query: 117 TRQLSQRCMLSALSPASRPSSS 138
           TR L +R   SA +P   P SS
Sbjct: 155 TRSLRRRATASAGTPWPSPPSS 176


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.130    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,861,648
Number of Sequences: 37866
Number of extensions: 348193
Number of successful extensions: 2440
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 2200
Number of HSP's gapped (non-prelim): 355
length of query: 203
length of database: 18,247,518
effective HSP length: 97
effective length of query: 106
effective length of database: 14,574,516
effective search space: 1544898696
effective search space used: 1544898696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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