Guide to the Human Genome
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Search of human proteins with 169173337

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169173337 PREDICTED: similar to ABT1-associated protein
[Homo sapiens]
         (101 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169173337 PREDICTED: similar to ABT1-associated protein [Homo...   210   2e-55
gi|169172536 PREDICTED: similar to ABT1-associated protein [Homo...   210   2e-55
gi|169173104 PREDICTED: similar to ABT1-associated protein [Homo...   210   2e-55
gi|18093112 ABT1-associated protein [Homo sapiens]                    176   5e-45
gi|56090620 NFKB activating protein-like [Homo sapiens]                30   0.54 
gi|56676397 ankyrin repeat domain 11 [Homo sapiens]                    29   0.91 
gi|12232401 SET and MYND domain containing 3 [Homo sapiens]            28   2.0  
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof...    27   2.7  
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof...    27   2.7  
gi|219803769 trichoplein [Homo sapiens]                                27   4.5  
gi|14150056 trichoplein [Homo sapiens]                                 27   4.5  
gi|47578107 delangin isoform B [Homo sapiens]                          27   4.5  
gi|47578105 delangin isoform A [Homo sapiens]                          27   4.5  
gi|156119615 myosin IXA [Homo sapiens]                                 26   5.9  
gi|238231392 dedicator of cytokinesis 8 [Homo sapiens]                 26   5.9  
gi|168229156 NFKB activating protein [Homo sapiens]                    26   7.7  
gi|38044112 restin isoform b [Homo sapiens]                            26   7.7  
gi|4506751 restin isoform a [Homo sapiens]                             26   7.7  
gi|15149465 caldesmon 1 isoform 5 [Homo sapiens]                       26   7.7  
gi|15149463 caldesmon 1 isoform 4 [Homo sapiens]                       26   7.7  
gi|15149467 caldesmon 1 isoform 3 [Homo sapiens]                       26   7.7  
gi|4826657 caldesmon 1 isoform 2 [Homo sapiens]                        26   7.7  
gi|44680105 caldesmon 1 isoform 1 [Homo sapiens]                       26   7.7  
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap...    26   7.7  
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap...    26   7.7  

>gi|169173337 PREDICTED: similar to ABT1-associated protein [Homo
           sapiens]
          Length = 101

 Score =  210 bits (535), Expect = 2e-55
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60
           MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN
Sbjct: 1   MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60

Query: 61  NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKTPD 101
           NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKTPD
Sbjct: 61  NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKTPD 101


>gi|169172536 PREDICTED: similar to ABT1-associated protein [Homo
           sapiens]
          Length = 101

 Score =  210 bits (535), Expect = 2e-55
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60
           MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN
Sbjct: 1   MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60

Query: 61  NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKTPD 101
           NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKTPD
Sbjct: 61  NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKTPD 101


>gi|169173104 PREDICTED: similar to ABT1-associated protein [Homo
           sapiens]
          Length = 101

 Score =  210 bits (535), Expect = 2e-55
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60
           MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN
Sbjct: 1   MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60

Query: 61  NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKTPD 101
           NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKTPD
Sbjct: 61  NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKTPD 101


>gi|18093112 ABT1-associated protein [Homo sapiens]
          Length = 851

 Score =  176 bits (445), Expect = 5e-45
 Identities = 87/99 (87%), Positives = 91/99 (91%)

Query: 1  MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60
          MSSKQEIMSDQ FR+VAKDPRFWEMPE+DRKVKI +R RAMFHDKKFKLNYAVDKRGRP 
Sbjct: 1  MSSKQEIMSDQRFRRVAKDPRFWEMPEKDRKVKIDKRFRAMFHDKKFKLNYAVDKRGRPI 60

Query: 61 NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKT 99
          +HSTTEDLK FYDLSDSDSNLS EDSKAL QKKIKK KT
Sbjct: 61 SHSTTEDLKRFYDLSDSDSNLSGEDSKALSQKKIKKKKT 99


>gi|56090620 NFKB activating protein-like [Homo sapiens]
          Length = 402

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 18/88 (20%)

Query: 26  PEEDRKVKIHRRCRAMFHD----KKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNL 81
           P ED +   H++  +   +    +K K + + +K+ R N  S  +  K+    SDSDSN 
Sbjct: 153 PVEDEEEVTHQKSSSSDSNSEEHRKKKTSRSRNKKKRKNKSSKRKHRKY----SDSDSNS 208

Query: 82  ---SNEDS-------KALKQKKIKKIKT 99
              +N DS       KA K+KK KK KT
Sbjct: 209 ESDTNSDSDDDKKRVKAKKKKKKKKHKT 236


>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
          Length = 2663

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 1   MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60
           +  K ++  D++ ++  K+  F E  E+ +K K++R   A   D+    N  ++      
Sbjct: 776 LEKKNDLKEDKISKE--KEKIFKEDKEKLKKEKVYREDSAF--DEYCNKNQFLENEDTKF 831

Query: 61  NHSTTEDLKHFYDLSDSDSNLSNEDS 86
           + S  +  + F DLSDS  +   EDS
Sbjct: 832 SLSDDQRDRWFSDLSDSSFDFKGEDS 857


>gi|12232401 SET and MYND domain containing 3 [Homo sapiens]
          Length = 369

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 26 PEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLSNED 85
          P+  R+ K  + C+  +     +L   V  +      S +E L  FYDL  + + L+ + 
Sbjct: 22 PDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDK 81

Query: 86 SKALKQ 91
           + L+Q
Sbjct: 82 KEGLRQ 87


>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform
           5 [Homo sapiens]
          Length = 6907

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 46  KFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLSNEDSKA--LKQKKIKKIKT 99
           K KLNYA+     P  H T   L+   +L D D + S + S+A  L Q+K+   K+
Sbjct: 381 KIKLNYALP----PPLHQTEAWLQEVEELMDEDLSASQDHSQAVTLIQEKMTLFKS 432


>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform
           1 [Homo sapiens]
          Length = 6885

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 46  KFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLSNEDSKA--LKQKKIKKIKT 99
           K KLNYA+     P  H T   L+   +L D D + S + S+A  L Q+K+   K+
Sbjct: 381 KIKLNYALP----PPLHQTEAWLQEVEELMDEDLSASQDHSQAVTLIQEKMTLFKS 432


>gi|219803769 trichoplein [Homo sapiens]
          Length = 498

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 23  WEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLS 82
           WEM +E++K    +   A   +K+++  Y   +R         E+ +   D   +++ L 
Sbjct: 166 WEMQKEEKK---QQEATAEQENKRYENEYERARREALERMKAEEERRQLEDKLQAEALLQ 222

Query: 83  NEDSKALKQKKIKKIK 98
             +   LK+ +  K+K
Sbjct: 223 QMEELKLKEVEATKLK 238


>gi|14150056 trichoplein [Homo sapiens]
          Length = 498

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 23  WEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLS 82
           WEM +E++K    +   A   +K+++  Y   +R         E+ +   D   +++ L 
Sbjct: 166 WEMQKEEKK---QQEATAEQENKRYENEYERARREALERMKAEEERRQLEDKLQAEALLQ 222

Query: 83  NEDSKALKQKKIKKIK 98
             +   LK+ +  K+K
Sbjct: 223 QMEELKLKEVEATKLK 238


>gi|47578107 delangin isoform B [Homo sapiens]
          Length = 2697

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 57  GRPNNHSTTEDLKHFYDLSDSDSNLSNEDSKALKQK 92
           G+P+     E  KH  D       L +E ++ALKQ+
Sbjct: 769 GKPSTEKKPEVSKHKQDTKSDSPRLKSERAEALKQR 804


>gi|47578105 delangin isoform A [Homo sapiens]
          Length = 2804

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 57  GRPNNHSTTEDLKHFYDLSDSDSNLSNEDSKALKQK 92
           G+P+     E  KH  D       L +E ++ALKQ+
Sbjct: 769 GKPSTEKKPEVSKHKQDTKSDSPRLKSERAEALKQR 804


>gi|156119615 myosin IXA [Homo sapiens]
          Length = 2548

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 19   DPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVD-KRGRPNNHSTTEDLKHFYDLSDS 77
            DP  WE    D ++K    C+++    +     +VD  +  PN        +   DL + 
Sbjct: 1190 DPSGWEDCSFDNRIKAIEECKSVIESNRISRESSVDCLKESPNKQQERAQSQSGVDLQED 1249

Query: 78   ----DSNLSNEDSKALKQKKIKKIK 98
                +   S ED   L QKK+ + K
Sbjct: 1250 VLVRERPRSLED---LHQKKVGRAK 1271


>gi|238231392 dedicator of cytokinesis 8 [Homo sapiens]
          Length = 2099

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 24   EMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLSN 83
            E+P + +  + H + R  F +   +   AV+K    N    T D + +      + N   
Sbjct: 1999 EIPADPKLYRHHNKLRLCFKEFIMRCGEAVEK----NKRLITADQREYQQELKKNYNKLK 2054

Query: 84   EDSKALKQKKIKKIKTP 100
            E+ + + ++KI ++  P
Sbjct: 2055 ENLRPMIERKIPELYKP 2071


>gi|168229156 NFKB activating protein [Homo sapiens]
          Length = 415

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 26  PEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKH--FYDLSDSDSN--- 80
           P ED + K      +   ++K K +    +R +      +   KH  + + SDSDS+   
Sbjct: 162 PVEDEEPKKSTTSASTSEEEKKKKSSRSKERSKKRRKKKSSKRKHKKYSEDSDSDSDSET 221

Query: 81  -LSNEDSKALKQKKIKKIK 98
             S+ED+K   +K  KK K
Sbjct: 222 DSSDEDNKRRAKKAKKKEK 240


>gi|38044112 restin isoform b [Homo sapiens]
          Length = 1392

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 12/95 (12%)

Query: 1   MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60
           +S  QEI S Q   +V +     +   E   +K H   R   H K+ K  Y   ++    
Sbjct: 500 LSLLQEISSLQEKLEVTRT----DHQREITSLKEHFGAREETHQKEIKALYTATEKLSKE 555

Query: 61  NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIK 95
           N S    L+H        +N  N D  AL + K++
Sbjct: 556 NESLKSKLEH--------ANKENSDVIALWKSKLE 582


>gi|4506751 restin isoform a [Homo sapiens]
          Length = 1427

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 12/95 (12%)

Query: 1   MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60
           +S  QEI S Q   +V +     +   E   +K H   R   H K+ K  Y   ++    
Sbjct: 535 LSLLQEISSLQEKLEVTRT----DHQREITSLKEHFGAREETHQKEIKALYTATEKLSKE 590

Query: 61  NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIK 95
           N S    L+H        +N  N D  AL + K++
Sbjct: 591 NESLKSKLEH--------ANKENSDVIALWKSKLE 617


>gi|15149465 caldesmon 1 isoform 5 [Homo sapiens]
          Length = 532

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/70 (22%), Positives = 31/70 (44%)

Query: 27  EEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLSNEDS 86
           E DRK++     R +  + + +   A +KR +      ++D K F   +   S+L  E+ 
Sbjct: 329 EADRKLREEEEKRRLKEEIERRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIEER 388

Query: 87  KALKQKKIKK 96
                K ++K
Sbjct: 389 AEFLNKSVQK 398


>gi|15149463 caldesmon 1 isoform 4 [Homo sapiens]
          Length = 558

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/70 (22%), Positives = 31/70 (44%)

Query: 27  EEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLSNEDS 86
           E DRK++     R +  + + +   A +KR +      ++D K F   +   S+L  E+ 
Sbjct: 355 EADRKLREEEEKRRLKEEIERRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIEER 414

Query: 87  KALKQKKIKK 96
                K ++K
Sbjct: 415 AEFLNKSVQK 424


>gi|15149467 caldesmon 1 isoform 3 [Homo sapiens]
          Length = 564

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/70 (22%), Positives = 31/70 (44%)

Query: 27  EEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLSNEDS 86
           E DRK++     R +  + + +   A +KR +      ++D K F   +   S+L  E+ 
Sbjct: 361 EADRKLREEEEKRRLKEEIERRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIEER 420

Query: 87  KALKQKKIKK 96
                K ++K
Sbjct: 421 AEFLNKSVQK 430


>gi|4826657 caldesmon 1 isoform 2 [Homo sapiens]
          Length = 538

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/70 (22%), Positives = 31/70 (44%)

Query: 27  EEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLSNEDS 86
           E DRK++     R +  + + +   A +KR +      ++D K F   +   S+L  E+ 
Sbjct: 335 EADRKLREEEEKRRLKEEIERRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIEER 394

Query: 87  KALKQKKIKK 96
                K ++K
Sbjct: 395 AEFLNKSVQK 404


>gi|44680105 caldesmon 1 isoform 1 [Homo sapiens]
          Length = 793

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/70 (22%), Positives = 31/70 (44%)

Query: 27  EEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLSNEDS 86
           E DRK++     R +  + + +   A +KR +      ++D K F   +   S+L  E+ 
Sbjct: 590 EADRKLREEEEKRRLKEEIERRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIEER 649

Query: 87  KALKQKKIKK 96
                K ++K
Sbjct: 650 AEFLNKSVQK 659


>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
           sapiens]
          Length = 805

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 63  STTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIK 98
           STT+D K  +  SDS    S+E   + K+KK KK K
Sbjct: 743 STTKDSKK-HSGSDSSGRSSSESPGSSKEKKAKKPK 777


>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
           sapiens]
          Length = 805

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 63  STTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIK 98
           STT+D K  +  SDS    S+E   + K+KK KK K
Sbjct: 743 STTKDSKK-HSGSDSSGRSSSESPGSSKEKKAKKPK 777


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.129    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,745,692
Number of Sequences: 37866
Number of extensions: 142435
Number of successful extensions: 542
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 29
length of query: 101
length of database: 18,247,518
effective HSP length: 72
effective length of query: 29
effective length of database: 15,521,166
effective search space: 450113814
effective search space used: 450113814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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