Guide to the Human Genome
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Name: LOC100129527 Sequence: fasta or formatted (101aa) NCBI GI: 169173104
Description:

PREDICTED: similar to ABT1-associated protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {101aa} PREDICTED: similar to ABT1-associated protein
alt mRNA {101aa} PREDICTED: similar to ABT1-associated protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0          4           1
 C cysteine            1.0          1           1
 D aspartate          10.9         11           1
 E glutamate           5.9          6           2
 F phenylalanine       5.0          5           1
 G glycine             1.0          1           1
 H histidine           4.0          4           1
 I isoleucine          4.0          4           1
 K lysine             15.8         16           2
 L leucine             5.9          6           1
 M methionine          4.0          4           1
 N asparagine          5.0          5           2
 P proline             4.0          4           1
 Q glutamine           4.0          4           1
 R arginine            7.9          8           2
 S serine              8.9          9           2
 T threonine           3.0          3           2
 V valine              3.0          3           1
 W tryptophan          1.0          1           1
 Y tyrosine            2.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to ABT1-associated protein [Homo... 
LOC100129527          1.000   PREDICTED: similar to ABT1-associated protein [Homo...
LOC100129527          1.000   PREDICTED: similar to ABT1-associated protein [Homo...
ESF1                  0.816   ABT1-associated protein 
NKAPL                 0.027   NFKB activating protein-like 
ANKRD11               0.022   ankyrin repeat domain 11 
SMYD3                 0.016   SET and MYND domain containing 3 
SYNE2                 0.011   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.011   spectrin repeat containing, nuclear envelope 2 isof...
TCHP                  0.011   trichoplein 
TCHP                  0.011   trichoplein 
NIPBL                 0.011   delangin isoform B 
NIPBL                 0.011   delangin isoform A 
MYO9A                 0.005   myosin IXA 
DOCK8                 0.005   dedicator of cytokinesis 8 
NKAP                  0.005   NFKB activating protein 
CLIP1                 0.005   restin isoform b 
CLIP1                 0.005   restin isoform a 
CALD1                 0.005   caldesmon 1 isoform 5 
CALD1                 0.005   caldesmon 1 isoform 4 
CALD1                 0.005   caldesmon 1 isoform 3 
CALD1                 0.005   caldesmon 1 isoform 2 
CALD1                 0.005   caldesmon 1 isoform 1 
SFRS18                0.005   splicing factor, arginine/serine-rich 130 
SFRS18                0.005   splicing factor, arginine/serine-rich 130 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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