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Search of human proteins with 169173104
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169173104 PREDICTED: similar to ABT1-associated protein
[Homo sapiens]
(101 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169173337 PREDICTED: similar to ABT1-associated protein [Homo... 210 2e-55
gi|169172536 PREDICTED: similar to ABT1-associated protein [Homo... 210 2e-55
gi|169173104 PREDICTED: similar to ABT1-associated protein [Homo... 210 2e-55
gi|18093112 ABT1-associated protein [Homo sapiens] 176 5e-45
gi|56090620 NFKB activating protein-like [Homo sapiens] 30 0.54
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 29 0.91
gi|12232401 SET and MYND domain containing 3 [Homo sapiens] 28 2.0
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 27 2.7
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 27 2.7
gi|219803769 trichoplein [Homo sapiens] 27 4.5
gi|14150056 trichoplein [Homo sapiens] 27 4.5
gi|47578107 delangin isoform B [Homo sapiens] 27 4.5
gi|47578105 delangin isoform A [Homo sapiens] 27 4.5
gi|156119615 myosin IXA [Homo sapiens] 26 5.9
gi|238231392 dedicator of cytokinesis 8 [Homo sapiens] 26 5.9
gi|168229156 NFKB activating protein [Homo sapiens] 26 7.7
gi|38044112 restin isoform b [Homo sapiens] 26 7.7
gi|4506751 restin isoform a [Homo sapiens] 26 7.7
gi|15149465 caldesmon 1 isoform 5 [Homo sapiens] 26 7.7
gi|15149463 caldesmon 1 isoform 4 [Homo sapiens] 26 7.7
gi|15149467 caldesmon 1 isoform 3 [Homo sapiens] 26 7.7
gi|4826657 caldesmon 1 isoform 2 [Homo sapiens] 26 7.7
gi|44680105 caldesmon 1 isoform 1 [Homo sapiens] 26 7.7
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 26 7.7
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 26 7.7
>gi|169173337 PREDICTED: similar to ABT1-associated protein [Homo
sapiens]
Length = 101
Score = 210 bits (535), Expect = 2e-55
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60
MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN
Sbjct: 1 MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60
Query: 61 NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKTPD 101
NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKTPD
Sbjct: 61 NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKTPD 101
>gi|169172536 PREDICTED: similar to ABT1-associated protein [Homo
sapiens]
Length = 101
Score = 210 bits (535), Expect = 2e-55
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60
MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN
Sbjct: 1 MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60
Query: 61 NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKTPD 101
NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKTPD
Sbjct: 61 NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKTPD 101
>gi|169173104 PREDICTED: similar to ABT1-associated protein [Homo
sapiens]
Length = 101
Score = 210 bits (535), Expect = 2e-55
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60
MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN
Sbjct: 1 MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60
Query: 61 NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKTPD 101
NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKTPD
Sbjct: 61 NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKTPD 101
>gi|18093112 ABT1-associated protein [Homo sapiens]
Length = 851
Score = 176 bits (445), Expect = 5e-45
Identities = 87/99 (87%), Positives = 91/99 (91%)
Query: 1 MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60
MSSKQEIMSDQ FR+VAKDPRFWEMPE+DRKVKI +R RAMFHDKKFKLNYAVDKRGRP
Sbjct: 1 MSSKQEIMSDQRFRRVAKDPRFWEMPEKDRKVKIDKRFRAMFHDKKFKLNYAVDKRGRPI 60
Query: 61 NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIKT 99
+HSTTEDLK FYDLSDSDSNLS EDSKAL QKKIKK KT
Sbjct: 61 SHSTTEDLKRFYDLSDSDSNLSGEDSKALSQKKIKKKKT 99
>gi|56090620 NFKB activating protein-like [Homo sapiens]
Length = 402
Score = 29.6 bits (65), Expect = 0.54
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 26 PEEDRKVKIHRRCRAMFHD----KKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNL 81
P ED + H++ + + +K K + + +K+ R N S + K+ SDSDSN
Sbjct: 153 PVEDEEEVTHQKSSSSDSNSEEHRKKKTSRSRNKKKRKNKSSKRKHRKY----SDSDSNS 208
Query: 82 ---SNEDS-------KALKQKKIKKIKT 99
+N DS KA K+KK KK KT
Sbjct: 209 ESDTNSDSDDDKKRVKAKKKKKKKKHKT 236
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 28.9 bits (63), Expect = 0.91
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 1 MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60
+ K ++ D++ ++ K+ F E E+ +K K++R A D+ N ++
Sbjct: 776 LEKKNDLKEDKISKE--KEKIFKEDKEKLKKEKVYREDSAF--DEYCNKNQFLENEDTKF 831
Query: 61 NHSTTEDLKHFYDLSDSDSNLSNEDS 86
+ S + + F DLSDS + EDS
Sbjct: 832 SLSDDQRDRWFSDLSDSSFDFKGEDS 857
>gi|12232401 SET and MYND domain containing 3 [Homo sapiens]
Length = 369
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 26 PEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLSNED 85
P+ R+ K + C+ + +L V + S +E L FYDL + + L+ +
Sbjct: 22 PDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDK 81
Query: 86 SKALKQ 91
+ L+Q
Sbjct: 82 KEGLRQ 87
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform
5 [Homo sapiens]
Length = 6907
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 46 KFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLSNEDSKA--LKQKKIKKIKT 99
K KLNYA+ P H T L+ +L D D + S + S+A L Q+K+ K+
Sbjct: 381 KIKLNYALP----PPLHQTEAWLQEVEELMDEDLSASQDHSQAVTLIQEKMTLFKS 432
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform
1 [Homo sapiens]
Length = 6885
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 46 KFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLSNEDSKA--LKQKKIKKIKT 99
K KLNYA+ P H T L+ +L D D + S + S+A L Q+K+ K+
Sbjct: 381 KIKLNYALP----PPLHQTEAWLQEVEELMDEDLSASQDHSQAVTLIQEKMTLFKS 432
>gi|219803769 trichoplein [Homo sapiens]
Length = 498
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 23 WEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLS 82
WEM +E++K + A +K+++ Y +R E+ + D +++ L
Sbjct: 166 WEMQKEEKK---QQEATAEQENKRYENEYERARREALERMKAEEERRQLEDKLQAEALLQ 222
Query: 83 NEDSKALKQKKIKKIK 98
+ LK+ + K+K
Sbjct: 223 QMEELKLKEVEATKLK 238
>gi|14150056 trichoplein [Homo sapiens]
Length = 498
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 23 WEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLS 82
WEM +E++K + A +K+++ Y +R E+ + D +++ L
Sbjct: 166 WEMQKEEKK---QQEATAEQENKRYENEYERARREALERMKAEEERRQLEDKLQAEALLQ 222
Query: 83 NEDSKALKQKKIKKIK 98
+ LK+ + K+K
Sbjct: 223 QMEELKLKEVEATKLK 238
>gi|47578107 delangin isoform B [Homo sapiens]
Length = 2697
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 57 GRPNNHSTTEDLKHFYDLSDSDSNLSNEDSKALKQK 92
G+P+ E KH D L +E ++ALKQ+
Sbjct: 769 GKPSTEKKPEVSKHKQDTKSDSPRLKSERAEALKQR 804
>gi|47578105 delangin isoform A [Homo sapiens]
Length = 2804
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 57 GRPNNHSTTEDLKHFYDLSDSDSNLSNEDSKALKQK 92
G+P+ E KH D L +E ++ALKQ+
Sbjct: 769 GKPSTEKKPEVSKHKQDTKSDSPRLKSERAEALKQR 804
>gi|156119615 myosin IXA [Homo sapiens]
Length = 2548
Score = 26.2 bits (56), Expect = 5.9
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 19 DPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVD-KRGRPNNHSTTEDLKHFYDLSDS 77
DP WE D ++K C+++ + +VD + PN + DL +
Sbjct: 1190 DPSGWEDCSFDNRIKAIEECKSVIESNRISRESSVDCLKESPNKQQERAQSQSGVDLQED 1249
Query: 78 ----DSNLSNEDSKALKQKKIKKIK 98
+ S ED L QKK+ + K
Sbjct: 1250 VLVRERPRSLED---LHQKKVGRAK 1271
>gi|238231392 dedicator of cytokinesis 8 [Homo sapiens]
Length = 2099
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 24 EMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLSN 83
E+P + + + H + R F + + AV+K N T D + + + N
Sbjct: 1999 EIPADPKLYRHHNKLRLCFKEFIMRCGEAVEK----NKRLITADQREYQQELKKNYNKLK 2054
Query: 84 EDSKALKQKKIKKIKTP 100
E+ + + ++KI ++ P
Sbjct: 2055 ENLRPMIERKIPELYKP 2071
>gi|168229156 NFKB activating protein [Homo sapiens]
Length = 415
Score = 25.8 bits (55), Expect = 7.7
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 26 PEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKH--FYDLSDSDSN--- 80
P ED + K + ++K K + +R + + KH + + SDSDS+
Sbjct: 162 PVEDEEPKKSTTSASTSEEEKKKKSSRSKERSKKRRKKKSSKRKHKKYSEDSDSDSDSET 221
Query: 81 -LSNEDSKALKQKKIKKIK 98
S+ED+K +K KK K
Sbjct: 222 DSSDEDNKRRAKKAKKKEK 240
>gi|38044112 restin isoform b [Homo sapiens]
Length = 1392
Score = 25.8 bits (55), Expect = 7.7
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 1 MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60
+S QEI S Q +V + + E +K H R H K+ K Y ++
Sbjct: 500 LSLLQEISSLQEKLEVTRT----DHQREITSLKEHFGAREETHQKEIKALYTATEKLSKE 555
Query: 61 NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIK 95
N S L+H +N N D AL + K++
Sbjct: 556 NESLKSKLEH--------ANKENSDVIALWKSKLE 582
>gi|4506751 restin isoform a [Homo sapiens]
Length = 1427
Score = 25.8 bits (55), Expect = 7.7
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 1 MSSKQEIMSDQLFRQVAKDPRFWEMPEEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPN 60
+S QEI S Q +V + + E +K H R H K+ K Y ++
Sbjct: 535 LSLLQEISSLQEKLEVTRT----DHQREITSLKEHFGAREETHQKEIKALYTATEKLSKE 590
Query: 61 NHSTTEDLKHFYDLSDSDSNLSNEDSKALKQKKIK 95
N S L+H +N N D AL + K++
Sbjct: 591 NESLKSKLEH--------ANKENSDVIALWKSKLE 617
>gi|15149465 caldesmon 1 isoform 5 [Homo sapiens]
Length = 532
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 27 EEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLSNEDS 86
E DRK++ R + + + + A +KR + ++D K F + S+L E+
Sbjct: 329 EADRKLREEEEKRRLKEEIERRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIEER 388
Query: 87 KALKQKKIKK 96
K ++K
Sbjct: 389 AEFLNKSVQK 398
>gi|15149463 caldesmon 1 isoform 4 [Homo sapiens]
Length = 558
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 27 EEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLSNEDS 86
E DRK++ R + + + + A +KR + ++D K F + S+L E+
Sbjct: 355 EADRKLREEEEKRRLKEEIERRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIEER 414
Query: 87 KALKQKKIKK 96
K ++K
Sbjct: 415 AEFLNKSVQK 424
>gi|15149467 caldesmon 1 isoform 3 [Homo sapiens]
Length = 564
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 27 EEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLSNEDS 86
E DRK++ R + + + + A +KR + ++D K F + S+L E+
Sbjct: 361 EADRKLREEEEKRRLKEEIERRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIEER 420
Query: 87 KALKQKKIKK 96
K ++K
Sbjct: 421 AEFLNKSVQK 430
>gi|4826657 caldesmon 1 isoform 2 [Homo sapiens]
Length = 538
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 27 EEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLSNEDS 86
E DRK++ R + + + + A +KR + ++D K F + S+L E+
Sbjct: 335 EADRKLREEEEKRRLKEEIERRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIEER 394
Query: 87 KALKQKKIKK 96
K ++K
Sbjct: 395 AEFLNKSVQK 404
>gi|44680105 caldesmon 1 isoform 1 [Homo sapiens]
Length = 793
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/70 (22%), Positives = 31/70 (44%)
Query: 27 EEDRKVKIHRRCRAMFHDKKFKLNYAVDKRGRPNNHSTTEDLKHFYDLSDSDSNLSNEDS 86
E DRK++ R + + + + A +KR + ++D K F + S+L E+
Sbjct: 590 EADRKLREEEEKRRLKEEIERRRAEAAEKRQKMPEDGLSDDKKPFKCFTPKGSSLKIEER 649
Query: 87 KALKQKKIKK 96
K ++K
Sbjct: 650 AEFLNKSVQK 659
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 63 STTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIK 98
STT+D K + SDS S+E + K+KK KK K
Sbjct: 743 STTKDSKK-HSGSDSSGRSSSESPGSSKEKKAKKPK 777
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 63 STTEDLKHFYDLSDSDSNLSNEDSKALKQKKIKKIK 98
STT+D K + SDS S+E + K+KK KK K
Sbjct: 743 STTKDSKK-HSGSDSSGRSSSESPGSSKEKKAKKPK 777
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,745,692
Number of Sequences: 37866
Number of extensions: 142435
Number of successful extensions: 542
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 29
length of query: 101
length of database: 18,247,518
effective HSP length: 72
effective length of query: 29
effective length of database: 15,521,166
effective search space: 450113814
effective search space used: 450113814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.