Guide to the Human Genome
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Name: C9orf97 Sequence: fasta or formatted (516aa) NCBI GI: 111038120
Description:

hypothetical protein LOC158427

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         26           2
 C cysteine            5.2         27           2
 D aspartate           6.2         32           2
 E glutamate           7.2         37           2
 F phenylalanine       5.0         26           1
 G glycine             6.4         33           2
 H histidine           2.7         14           1
 I isoleucine          4.1         21           1
 K lysine              8.7         45           3
 L leucine             9.5         49           2
 M methionine          1.4          7           1
 N asparagine          1.7          9           1
 P proline             5.4         28           1
 Q glutamine           4.7         24           1
 R arginine            4.5         23           2
 S serine              8.5         44           3
 T threonine           4.3         22           1
 V valine              5.0         26           2
 W tryptophan          1.0          5           1
 Y tyrosine            3.5         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC158427 
ZBTB40                0.011   zinc finger and BTB domain containing 40 
ZBTB40                0.011   zinc finger and BTB domain containing 40 
CHD4                  0.008   chromodomain helicase DNA binding protein 4 
GMPR2                 0.008   guanosine monophosphate reductase 2 isoform 2 
GMPR2                 0.008   guanosine monophosphate reductase 2 isoform 2 
GMPR2                 0.008   guanosine monophosphate reductase 2 isoform 2 
GMPR2                 0.008   guanosine monophosphate reductase 2 isoform 1 
ZFHX4                 0.007   zinc finger homeodomain 4 
PRICKLE1              0.006   prickle homolog 1 
PRICKLE1              0.006   prickle homolog 1 
PRICKLE1              0.006   prickle homolog 1 
PRICKLE1              0.006   prickle homolog 1 
IFT140                0.006   intraflagellar transport 140 
ZNF334                0.006   zinc finger protein 334 isoform a 
ZNF334                0.006   zinc finger protein 334 isoform b 
ZNF667                0.006   zinc finger protein 667 
ADAM8                 0.006   ADAM metallopeptidase domain 8 precursor 
ZNF254                0.005   zinc finger protein 254 
ZNF670                0.005   zinc finger protein 670 
ADAM7                 0.005   a disintegrin and metalloproteinase domain 7 
LOC100290519          0.005   PREDICTED: hypothetical protein XP_002346939 
PRDM16                0.005   PR domain containing 16 isoform 2 
PRDM16                0.005   PR domain containing 16 isoform 1 
KRTAP12-2             0.005   keratin associated protein 12-2 
ZNF823                0.005   ZFP-36 for a zinc finger protein 
EVI1                  0.004   ecotropic viral integration site 1 isoform a 
EVI1                  0.004   ecotropic viral integration site 1 isoform b 
EVI1                  0.004   ecotropic viral integration site 1 isoform b 
FKTN                  0.004   fukutin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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