Guide to the Human Genome
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Name: PRICKLE1 Sequence: fasta or formatted (831aa) NCBI GI: 222136682
Description:

prickle homolog 1

Referenced in:

LIM Domain Proteins
Planar Cell Polarity

Other entries for this name:
alt mRNA [831aa] prickle homolog 1
alt mRNA [831aa] prickle homolog 1
alt mRNA [831aa] prickle homolog 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         46           1
 C cysteine            4.1         34           2
 D aspartate           6.3         52           3
 E glutamate           8.3         69           3
 F phenylalanine       3.2         27           1
 G glycine             6.1         51           2
 H histidine           3.2         27           3
 I isoleucine          2.9         24           2
 K lysine              5.9         49           4
 L leucine             8.7         72           3
 M methionine          2.3         19           1
 N asparagine          3.2         27           2
 P proline             5.4         45           2
 Q glutamine           5.7         47           2
 R arginine            6.4         53           4
 S serine             11.3         94           7
 T threonine           3.1         26           2
 V valine              3.1         26           1
 W tryptophan          1.2         10           1
 Y tyrosine            4.0         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prickle homolog 1 
PRICKLE1              1.000   prickle homolog 1 
PRICKLE1              1.000   prickle homolog 1 
PRICKLE1              1.000   prickle homolog 1 
PRICKLE2              0.434   prickle-like 2 
PRICKLE3              0.269   LIM domain only 6 
TES                   0.133   testin isoform 1 
TES                   0.133   testin isoform 2 
PRICKLE4              0.115   over-expressed breast tumor protein 
LMCD1                 0.087   LIM and cysteine-rich domains 1 
FHL3                  0.046   four and a half LIM domains 3 
TGFB1I1               0.043   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.043   transforming growth factor beta 1 induced transcript...
LDB3                  0.042   LIM domain binding 3 isoform 2 
LDB3                  0.042   LIM domain binding 3 isoform 1 
FHL1                  0.041   four and a half LIM domains 1 isoform 2 
FHL1                  0.041   four and a half LIM domains 1 isoform 1 
FHL1                  0.041   four and a half LIM domains 1 isoform 2 
PXN                   0.041   paxillin isoform 3 
PXN                   0.041   paxillin isoform 2 
PXN                   0.041   paxillin isoform 1 
FHL1                  0.041   four and a half LIM domains 1 isoform 3 
FHL1                  0.041   four and a half LIM domains 1 isoform 5 
FHL1                  0.041   four and a half LIM domains 1 isoform 2 
FHL2                  0.040   four and a half LIM domains 2 
FHL2                  0.040   four and a half LIM domains 2 
FHL2                  0.040   four and a half LIM domains 2 
FHL2                  0.040   four and a half LIM domains 2 
FHL5                  0.038   activator of cAMP-responsive element modulator (CREM...
PDLIM7                0.036   PDZ and LIM domain 7 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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