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Search of human proteins with 169172508
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169172508 PREDICTED: hypothetical protein [Homo sapiens]
(402 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169172508 PREDICTED: hypothetical protein [Homo sapiens] 828 0.0
gi|169173078 PREDICTED: hypothetical protein [Homo sapiens] 825 0.0
gi|169173306 PREDICTED: hypothetical protein [Homo sapiens] 383 e-106
gi|239749426 PREDICTED: hypothetical protein XP_002347042 [Homo ... 153 2e-37
gi|239743560 PREDICTED: hypothetical protein XP_002342893 [Homo ... 153 2e-37
gi|239754887 PREDICTED: hypothetical protein XP_002346152 [Homo ... 153 3e-37
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 49 8e-06
gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo sap... 49 1e-05
gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sap... 49 1e-05
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 49 1e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 48 1e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 48 2e-05
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 48 2e-05
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 48 2e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 47 2e-05
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 47 3e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 46 7e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens] 45 9e-05
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 45 9e-05
gi|239756845 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-04
gi|169211031 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-04
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 45 1e-04
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 45 1e-04
gi|13129104 coiled-coil domain containing 86 [Homo sapiens] 45 1e-04
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 45 2e-04
gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo ... 45 2e-04
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 2e-04
gi|169211844 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 44 2e-04
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I... 44 3e-04
>gi|169172508 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 828 bits (2138), Expect = 0.0
Identities = 402/402 (100%), Positives = 402/402 (100%)
Query: 1 MRGLRACSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTGTQGVGSGGGGAGVRPEPCAGQR 60
MRGLRACSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTGTQGVGSGGGGAGVRPEPCAGQR
Sbjct: 1 MRGLRACSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTGTQGVGSGGGGAGVRPEPCAGQR 60
Query: 61 PAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPS 120
PAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPS
Sbjct: 61 PAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPS 120
Query: 121 CFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWAS 180
CFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWAS
Sbjct: 121 CFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWAS 180
Query: 181 SWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSR 240
SWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSR
Sbjct: 181 SWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSR 240
Query: 241 HRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRP 300
HRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRP
Sbjct: 241 HRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRP 300
Query: 301 NRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPS 360
NRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPS
Sbjct: 301 NRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPS 360
Query: 361 IARSLPGSGRLQGLIFPSTGKNVQRHKSPPLPSEESLSQRSR 402
IARSLPGSGRLQGLIFPSTGKNVQRHKSPPLPSEESLSQRSR
Sbjct: 361 IARSLPGSGRLQGLIFPSTGKNVQRHKSPPLPSEESLSQRSR 402
>gi|169173078 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 825 bits (2132), Expect = 0.0
Identities = 401/402 (99%), Positives = 401/402 (99%)
Query: 1 MRGLRACSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTGTQGVGSGGGGAGVRPEPCAGQR 60
MRGLRACSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTGTQGVGSGG GAGVRPEPCAGQR
Sbjct: 1 MRGLRACSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTGTQGVGSGGSGAGVRPEPCAGQR 60
Query: 61 PAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPS 120
PAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPS
Sbjct: 61 PAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPS 120
Query: 121 CFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWAS 180
CFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWAS
Sbjct: 121 CFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWAS 180
Query: 181 SWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSR 240
SWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSR
Sbjct: 181 SWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSR 240
Query: 241 HRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRP 300
HRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRP
Sbjct: 241 HRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRP 300
Query: 301 NRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPS 360
NRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPS
Sbjct: 301 NRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPS 360
Query: 361 IARSLPGSGRLQGLIFPSTGKNVQRHKSPPLPSEESLSQRSR 402
IARSLPGSGRLQGLIFPSTGKNVQRHKSPPLPSEESLSQRSR
Sbjct: 361 IARSLPGSGRLQGLIFPSTGKNVQRHKSPPLPSEESLSQRSR 402
>gi|169173306 PREDICTED: hypothetical protein [Homo sapiens]
Length = 281
Score = 383 bits (983), Expect = e-106
Identities = 189/190 (99%), Positives = 189/190 (99%)
Query: 213 PGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAP 272
P RRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAP
Sbjct: 92 PRRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAP 151
Query: 273 KPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGA 332
KPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGA
Sbjct: 152 KPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGA 211
Query: 333 SSETMWPTENLSSRRRAPPQRRRTRAPSIARSLPGSGRLQGLIFPSTGKNVQRHKSPPLP 392
SSETMWPTENLSSRRRAPPQRRRTRAPSIARSLPGSGRLQGLIFPSTGKNVQRHKSPPLP
Sbjct: 212 SSETMWPTENLSSRRRAPPQRRRTRAPSIARSLPGSGRLQGLIFPSTGKNVQRHKSPPLP 271
Query: 393 SEESLSQRSR 402
SEESLSQRSR
Sbjct: 272 SEESLSQRSR 281
Score = 31.2 bits (69), Expect = 1.7
Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 6/111 (5%)
Query: 265 APGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATL 324
+P LPR P+ G R ++ +L G P P R P H + L
Sbjct: 32 SPALPRPGFPAPGFPALRLPRRRAQLGVKLGGGPSPASGARPSP---HLEGAGCETRPWL 88
Query: 325 RAPPGRGASSETMWP--TENLSSRRRAPPQR-RRTRAPSIARSLPGSGRLQ 372
P R + P L R A P R RR RAP +A + G R++
Sbjct: 89 GPRPRRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIR 139
>gi|239749426 PREDICTED: hypothetical protein XP_002347042 [Homo
sapiens]
Length = 517
Score = 153 bits (387), Expect = 2e-37
Identities = 139/348 (39%), Positives = 163/348 (46%), Gaps = 90/348 (25%)
Query: 9 RDLRLAAGAGQAW-------------------GSAGRGRRGPAPRGQTGTQGVGSGGGGA 49
RDLR+A GAG+ G GRG+R R + T V A
Sbjct: 196 RDLRVAVGAGRRAVPGHRGGEESRVGVHAVQRGRVGRGQRVAVERRRAQTLAVAVVA--A 253
Query: 50 GVRPEPCAGQRPAGGKALRGEGQAQAAQGYAAANGW--GTVLVSGLVPQDPRAAPPPGGR 107
VR + QR AGG+AL GE +AQA G+AAA G G + +S V + P
Sbjct: 254 HVRRQ----QRRAGGEALLGELEAQAVHGHAAALGAQRGRLRLSQAVQEAALHPLQP--- 306
Query: 108 QLLLLRPPRWV-------------PSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQ 154
L LL PPR V P C + + + Q R P
Sbjct: 307 -LHLLAPPRPVLVVGVVLHVLHAQPLCLLH-EGPLLRQRQRLP----------------- 347
Query: 155 PSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRP----TWKAPDARLALGSA 210
R A GV + W + RQPLAL L P + PD LALGSA
Sbjct: 348 --------RLACTHLAQLGVVQVWI-----LLRQPLALVLSPHHESVHRPPDTGLALGSA 394
Query: 211 RGPGR------RLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHG 264
RGPGR RLALHL VP+GA++LGP GAQP HR QRA GLALVVTGVSRIR AHG
Sbjct: 395 RGPGRCSAVRRRLALHLHVPDGAQRLGPGAGAQPGHHRGQRALGLALVVTGVSRIRAAHG 454
Query: 265 APGLPRAPKPSAGRGGK--EGGERGTEMLR---RLRGSPRPNRHPRSG 307
APGLPR+P+PSAGR G G+E LR G P +R P SG
Sbjct: 455 APGLPRSPQPSAGRAASPDPGEGVGSEALRCPEGCAGLPARSRRPCSG 502
>gi|239743560 PREDICTED: hypothetical protein XP_002342893 [Homo
sapiens]
Length = 517
Score = 153 bits (387), Expect = 2e-37
Identities = 139/348 (39%), Positives = 163/348 (46%), Gaps = 90/348 (25%)
Query: 9 RDLRLAAGAGQAW-------------------GSAGRGRRGPAPRGQTGTQGVGSGGGGA 49
RDLR+A GAG+ G GRG+R R + T V A
Sbjct: 196 RDLRVAVGAGRRAVPGHRGGEESRVGVHAVQRGRVGRGQRVAVERRRAQTLAVAVVA--A 253
Query: 50 GVRPEPCAGQRPAGGKALRGEGQAQAAQGYAAANGW--GTVLVSGLVPQDPRAAPPPGGR 107
VR + QR AGG+AL GE +AQA G+AAA G G + +S V + P
Sbjct: 254 HVRRQ----QRRAGGEALLGELEAQAVHGHAAALGAQRGRLRLSQAVQEAALHPLQP--- 306
Query: 108 QLLLLRPPRWV-------------PSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQ 154
L LL PPR V P C + + + Q R P
Sbjct: 307 -LHLLAPPRPVLVVGVVLHVLHAQPLCLLH-EGPLLRQRQRLP----------------- 347
Query: 155 PSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRP----TWKAPDARLALGSA 210
R A GV + W + RQPLAL L P + PD LALGSA
Sbjct: 348 --------RLACTHLAQLGVVQVWI-----LLRQPLALVLSPHHESVHRPPDTGLALGSA 394
Query: 211 RGPGR------RLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHG 264
RGPGR RLALHL VP+GA++LGP GAQP HR QRA GLALVVTGVSRIR AHG
Sbjct: 395 RGPGRCSAVRRRLALHLHVPDGAQRLGPGAGAQPGHHRGQRALGLALVVTGVSRIRAAHG 454
Query: 265 APGLPRAPKPSAGRGGK--EGGERGTEMLR---RLRGSPRPNRHPRSG 307
APGLPR+P+PSAGR G G+E LR G P +R P SG
Sbjct: 455 APGLPRSPQPSAGRAASPDPGEGVGSEALRCPEGCAGLPARSRRPCSG 502
>gi|239754887 PREDICTED: hypothetical protein XP_002346152 [Homo
sapiens]
Length = 517
Score = 153 bits (386), Expect = 3e-37
Identities = 139/348 (39%), Positives = 162/348 (46%), Gaps = 90/348 (25%)
Query: 9 RDLRLAAGAGQAW-------------------GSAGRGRRGPAPRGQTGTQGVGSGGGGA 49
RDLR+A GAG+ G GRG+R R + T V A
Sbjct: 196 RDLRVAVGAGRRAVPGHRGGEESRVGVHAVQRGRVGRGQRVAVERRRAQTLAVAVVA--A 253
Query: 50 GVRPEPCAGQRPAGGKALRGEGQAQAAQGYAAANGW--GTVLVSGLVPQDPRAAPPPGGR 107
VR + QR AGG+AL GE +AQA G+AAA G G + +S V + P
Sbjct: 254 HVRRQ----QRRAGGEALLGELEAQAVHGHAAALGAQRGRLRLSQAVQEAALHPLQP--- 306
Query: 108 QLLLLRPPRWV-------------PSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQ 154
L LL PPR V P C + + + Q R P
Sbjct: 307 -LHLLAPPRPVLVVGVVLHVLHAQPLCLLH-EGPLLRQRQRLP----------------- 347
Query: 155 PSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRP----TWKAPDARLALGSA 210
R A GV + W + RQPLAL L P + PD LALGSA
Sbjct: 348 --------RLACTHLAQLGVVQVWI-----LLRQPLALVLSPHHESVHRPPDTGLALGSA 394
Query: 211 RGPGR------RLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHG 264
RGPGR RLALHL VP+GA++LGP GAQP HR QRA GLALVVTGVSRIR AHG
Sbjct: 395 RGPGRCSAVRRRLALHLHVPDGAQRLGPGAGAQPGHHRGQRALGLALVVTGVSRIRAAHG 454
Query: 265 APGLPRAPKPSAGRGGK--EGGERGTEMLR---RLRGSPRPNRHPRSG 307
APGLPR+P+PSAGR G G E LR G P +R P SG
Sbjct: 455 APGLPRSPQPSAGRAASPDPGEGVGNEALRCPEGCAGLPARSRRPCSG 502
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 48.9 bits (115), Expect = 8e-06
Identities = 77/312 (24%), Positives = 106/312 (33%), Gaps = 41/312 (13%)
Query: 95 PQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQ 154
P+ P+ AP PG + + S S AKR +H + P
Sbjct: 438 PESPKPAPAPGSHREI--------------SSSPTSKNRSHGRAKRDKSHSHTPS----- 478
Query: 155 PSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGPG 214
R R SP +A G RS + G R P W+ + G +R P
Sbjct: 479 ----RRMGRSRSPATAKRGRSRSRTPTKRGHSRSR-----SPQWRRSRSAQRWGRSRSPQ 529
Query: 215 RR-LALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIR-PAHGAPGLPRAP 272
RR + Q P +R + + RR R+ + G SR R PA R P
Sbjct: 530 RRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTP 589
Query: 273 --KPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGR 330
+ S R R RR R R RS S + R+P R
Sbjct: 590 ARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSR------TRSPVRRRSRSRSPARR 643
Query: 331 GASSETMWPTENLSSRRRAPPQRRRTRAPSIARSLPGSGRLQGLIFPSTGKNVQRHKSPP 390
S + P SR R P +R R+R+ + AR SGR + G++ R
Sbjct: 644 SGRSRSRTPARRGRSRSRTPARRGRSRSRTPARR---SGRSRSRTPARRGRSRSRTPRRG 700
Query: 391 LPSEESLSQRSR 402
SL +R R
Sbjct: 701 RSRSRSLVRRGR 712
Score = 43.1 bits (100), Expect = 4e-04
Identities = 95/417 (22%), Positives = 142/417 (34%), Gaps = 46/417 (11%)
Query: 9 RDLRLAAGAGQAWGSAGRGRRGPAPRGQTGTQGVGSGGGGAGVRPEPCAGQR------PA 62
+D AA Q+ + + PAPR GS G G PE + P
Sbjct: 1605 KDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPK 1664
Query: 63 GGKALRG-----EGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRW 117
A RG E + ++ + + ++ R+ + PPR
Sbjct: 1665 SRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRH 1724
Query: 118 VPSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRS 177
S P+ S + +++ R +RR + P SRR SP G+ RS
Sbjct: 1725 RRS--PSVSSPEPAEKSRSSRRRRSA---------SSPRTKTTSRRGRSPSPKPRGLQRS 1773
Query: 178 WASSWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRL-----ALHLQVPEGARQLGP 232
+ S R D + ++ R +R R H + P ARQ
Sbjct: 1774 RSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSP--ARQESS 1831
Query: 233 RTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLR 292
RT ++ R R + P SR PA RA P+ R + +
Sbjct: 1832 RTSSRRRRGRSRTPPTSRK--RSRSRTSPAPWKRSRSRA-SPATHRRSRSRTPLISRRRS 1888
Query: 293 RLRGSPRPNRHPRSGPVPAHGVASAAAGPATLR-----APPGRGASSETMWPTENLSSRR 347
R R SP R RS + + A P + R PP S + PT SR
Sbjct: 1889 RSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRS 1948
Query: 348 RAPP---QRRRTRAPSIARSLPGSGRLQGLIFPSTGKNVQRHKSPPLPSEESLSQRS 401
R PP +R R+R P + R R + P T + R ++ P+ S S+ S
Sbjct: 1949 RTPPVTRRRSRSRTPPVTRR-----RSRSRTSPITRRR-SRSRTSPVTRRRSRSRTS 1999
Score = 37.7 bits (86), Expect = 0.019
Identities = 69/303 (22%), Positives = 102/303 (33%), Gaps = 37/303 (12%)
Query: 13 LAAGAGQAWGSAGRGRRG----PAPRGQTGTQGVGSGGGGAGVRPEPCAGQRPAGGKALR 68
L++GA S+ G PAP G GA +P A +PA +
Sbjct: 2475 LSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQ-QPSALAALQPAKERRSS 2533
Query: 69 GEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSA 128
+ ++ ++++ + SG D + P ++ L R P P+ P
Sbjct: 2534 SSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPA--PKEAVR 2591
Query: 129 DISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQ 188
+ + PAKR+ + S S S S+S S +SS + P
Sbjct: 2592 EGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS- 2650
Query: 189 PLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPG 248
P P A S + P P R PR R R
Sbjct: 2651 -------PAKPGPQALPKPASPKKPP---------PGERRSRSPRKPIDSLRDSR----- 2689
Query: 249 LALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERG-----TEMLRRLRGSPRPNRH 303
+L + V R RP+ PR + S+ G G+RG + RR SPRP RH
Sbjct: 2690 -SLSYSPVERRRPSPQPS--PRDQQSSSSERGSRRGQRGDSRSPSHKRRRETPSPRPMRH 2746
Query: 304 PRS 306
S
Sbjct: 2747 RSS 2749
Score = 30.0 bits (66), Expect = 3.9
Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 11/125 (8%)
Query: 124 NSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWA 183
+S S+ S PAK P P K P R SR SPR + S + S++
Sbjct: 2638 SSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSR---SPRKPIDSLRDSRSLSYS 2694
Query: 184 GVPRQPLALDLRPT-WKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHR 242
V R+ RP+ +P + + S RG R + P R+ +P RHR
Sbjct: 2695 PVERR------RPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRR-RETPSPRPMRHR 2747
Query: 243 RQRAP 247
R+P
Sbjct: 2748 SSRSP 2752
>gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo
sapiens]
Length = 1038
Score = 48.5 bits (114), Expect = 1e-05
Identities = 74/313 (23%), Positives = 103/313 (32%), Gaps = 75/313 (23%)
Query: 98 PRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAKRR---------PTHFYHP 148
P A PP + L PP+ ++Q+A+I Q ++ R+ P+
Sbjct: 674 PEQARPPPPLEDNLFLPPQGGGKPPSSAQTAEIFQALQQECMRQLQAPAGSPAPSPSPGG 733
Query: 149 DEHKAQPSHVRGSRRPGSPR-SASPGV-GRSWASSWAGV-------PRQPLALDLRPTWK 199
D+ P V RP P SP G S W G PR+PL+
Sbjct: 734 DDKPQVPPRVPIPPRPTRPHVQLSPAPPGEEETSQWPGPASPPRVPPREPLS-------- 785
Query: 200 APDARLALGSARGPGRRLALHLQVPEGARQLGPRT--GAQPSRHRRQRAPGLALVVTGVS 257
P+G+R P G+ P R +PG + T
Sbjct: 786 ------------------------PQGSRTPSPLVPPGSSPLPPRLSSSPGKTMPTTQSF 821
Query: 258 RIRPAHGAPGLPRAPKPSAG-------RGGKEGG--------------ERGTEMLRRLRG 296
P + P + +AP P AG R GK+ ER LR +
Sbjct: 822 ASDPKYATPQVIQAPGPRAGPCILPIVRDGKKVSSTHYYLLPERPSYLERYQRFLREAQS 881
Query: 297 SPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRT 356
P P +P + AA AT+R P + + T N + R PP R
Sbjct: 882 PEEPTPLPVPLLLPPPSTPAPAAPTATVRPMPQAALDPKANFSTNNSNPGARPPPPRATA 941
Query: 357 RAPSIARSLPGSG 369
R P R PG G
Sbjct: 942 RLPQ--RGCPGDG 952
>gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sapiens]
Length = 1086
Score = 48.5 bits (114), Expect = 1e-05
Identities = 74/313 (23%), Positives = 103/313 (32%), Gaps = 75/313 (23%)
Query: 98 PRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAKRR---------PTHFYHP 148
P A PP + L PP+ ++Q+A+I Q ++ R+ P+
Sbjct: 752 PEQARPPPPLEDNLFLPPQGGGKPPSSAQTAEIFQALQQECMRQLQAPAGSPAPSPSPGG 811
Query: 149 DEHKAQPSHVRGSRRPGSPR-SASPGV-GRSWASSWAGV-------PRQPLALDLRPTWK 199
D+ P V RP P SP G S W G PR+PL+
Sbjct: 812 DDKPQVPPRVPIPPRPTRPHVQLSPAPPGEEETSQWPGPASPPRVPPREPLS-------- 863
Query: 200 APDARLALGSARGPGRRLALHLQVPEGARQLGPRT--GAQPSRHRRQRAPGLALVVTGVS 257
P+G+R P G+ P R +PG + T
Sbjct: 864 ------------------------PQGSRTPSPLVPPGSSPLPPRLSSSPGKTMPTTQSF 899
Query: 258 RIRPAHGAPGLPRAPKPSAG-------RGGKEGG--------------ERGTEMLRRLRG 296
P + P + +AP P AG R GK+ ER LR +
Sbjct: 900 ASDPKYATPQVIQAPGPRAGPCILPIVRDGKKVSSTHYYLLPERPSYLERYQRFLREAQS 959
Query: 297 SPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRT 356
P P +P + AA AT+R P + + T N + R PP R
Sbjct: 960 PEEPTPLPVPLLLPPPSTPAPAAPTATVRPMPQAALDPKANFSTNNSNPGARPPPPRATA 1019
Query: 357 RAPSIARSLPGSG 369
R P R PG G
Sbjct: 1020 RLPQ--RGCPGDG 1030
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 48.5 bits (114), Expect = 1e-05
Identities = 101/379 (26%), Positives = 140/379 (36%), Gaps = 76/379 (20%)
Query: 22 GSAGRGRRGPA-PRGQTGTQGVGSGGGGAGVRPE--------PCAGQRP---AGGKALRG 69
GS+ GR GP+ PRG ++ S G + PE P + P AGG A G
Sbjct: 142 GSSSYGRLGPSEPRGIYASERPKSLGDASPSAPEVVGARAAVPRSFSAPYPTAGGSA--G 199
Query: 70 EGQAQAAQGYAAANGWGTVL-VSGLVPQDPRAAPPP---------GGRQL-----LLLRP 114
+A+ A A + T + + + PR P GR L LLR
Sbjct: 200 PEACSSAERRARAGPFLTPSPLHAVAMRSPRPCGRPPTDSPDAGGAGRPLDGYISALLRR 259
Query: 115 PRWVPSCFPNSQ--SADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASP 172
R + P + AD + ++RP P A+P+ R G ++
Sbjct: 260 RRRRGAGQPRTSPGGADGGPRRQNSVRQRPPDA-SPSPGSARPAREPSLERVGGHPTSPA 318
Query: 173 GVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGP 232
+ R+WASSW + P AP A + + GR + Q GA+
Sbjct: 319 ALSRAWASSWES--------EAAPEPAAPPAAPSPPDSPAEGR--LVKAQYIPGAQ---A 365
Query: 233 RTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLR 292
T P R R++ P L +R R +P PR +AGR G+ G
Sbjct: 366 ATRGLPGRAARRKPPPL-------TRGRSVEQSP--PRERPRAAGRRGRMAEASGR---- 412
Query: 293 RLRGSPRPNRHPRS-GPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPP 351
RGSPR + RS G ASA PP +PT R PP
Sbjct: 413 --RGSPRARKASRSQSETSLLGRASAVPS-----GPP--------KYPTAEREEPR--PP 455
Query: 352 QRRRTRAPSIARSLPGSGR 370
+ RR AP++A GS R
Sbjct: 456 RPRRGPAPTLAAQAAGSCR 474
Score = 39.3 bits (90), Expect = 0.006
Identities = 102/383 (26%), Positives = 127/383 (33%), Gaps = 72/383 (18%)
Query: 1 MRGLRACSR---DLRLAAGAGQ---AWGSAGRGRRGPAPRGQTGTQGVGSGGGGA---GV 51
MR R C R D A GAG+ + SA RR GQ T G+ GG V
Sbjct: 226 MRSPRPCGRPPTDSPDAGGAGRPLDGYISALLRRRRRRGAGQPRTSPGGADGGPRRQNSV 285
Query: 52 RPEPC------AGQRPAGGKALR---GEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAP 102
R P RPA +L G + AA A A+ W + P P AAP
Sbjct: 286 RQRPPDASPSPGSARPAREPSLERVGGHPTSPAALSRAWASSWESEAAPE--PAAPPAAP 343
Query: 103 -PPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGS 161
PP L +++P +Q+A R A+R+P + P R
Sbjct: 344 SPPDSPAEGRLVKAQYIPG----AQAATRGLPGRA-ARRKPPPLTRGRSVEQSPPRER-- 396
Query: 162 RRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHL 221
PR+A + AS G PR R ++ LG A
Sbjct: 397 -----PRAAGRRGRMAEASGRRGSPRA------RKASRSQSETSLLGRASA--------- 436
Query: 222 QVPEGARQL--GPRTGAQPSRHRRQRAPGLALVVTGVSR-------IRPAHGAPGLPRAP 272
VP G + R +P R RR AP LA G R I A G PRAP
Sbjct: 437 -VPSGPPKYPTAEREEPRPPRPRRGPAPTLAAQAAGSCRRWRSTAEIDAADGRRVRPRAP 495
Query: 273 KPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPV----PAHGV----------ASAA 318
G +L GS R GP+ PA GV AS
Sbjct: 496 AARVPGPGPSPSAPQRRLLYGCAGSDSECSAGRLGPLGRRGPAGGVGGGYGESESSASEG 555
Query: 319 AGPATLRAPPGRGASSETMWPTE 341
PA A S +WP +
Sbjct: 556 ESPAFSSASSDSDGSGGLVWPQQ 578
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 48.1 bits (113), Expect = 1e-05
Identities = 86/338 (25%), Positives = 108/338 (31%), Gaps = 81/338 (23%)
Query: 26 RGRRGP-APRGQTGTQGVGSGGGGAGVRPEPCAGQRPAGGKALRGEGQAQAAQGYAAANG 84
+G GP PRG G G G G+ P P P G L G Q + GY +
Sbjct: 114 KGDTGPRGPRGPAGPPGRDGIPGQPGL-PGPPGPPGPPGPPGLGGNFAPQLSYGYDEKST 172
Query: 85 WGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAKRRPTH 144
G + + P PR P P P P
Sbjct: 173 GGISVPGPMGPSGPRGLPGP--------------------------------PGAPGPQG 200
Query: 145 FYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKAPDAR 204
F P +P G+ P PR G++ AG P +P R AR
Sbjct: 201 FQGPPGEPGEP----GASGPMGPRGPPGPPGKNGDDGEAGKPGRP---GERGPPGPQGAR 253
Query: 205 LALGSARGPGRRLALHLQVPEGAR----------------------QLGPRTGAQPSRHR 242
G+A PG + +GA+ Q+GPR P
Sbjct: 254 GLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPR--GLPGERG 311
Query: 243 RQRAPGLALVVTGVSRIRPAHGAPGL--PRAPKPSAGRGGKEG-----GERGTEMLRRLR 295
R APG A G A G PG P P G G +G G RG+E + +R
Sbjct: 312 RPGAPGPA-GARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVR 370
Query: 296 GSPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGAS 333
G P P P PA G A A P P +GA+
Sbjct: 371 GEPGP-------PGPA-GAAGPAGNPGADGQPGAKGAN 400
Score = 47.4 bits (111), Expect = 2e-05
Identities = 95/332 (28%), Positives = 116/332 (34%), Gaps = 48/332 (14%)
Query: 26 RGRRGPA-PRGQTGTQGVGSGGGGAGVRPEPCAGQRPA--GGKALRGEGQAQAAQGYAAA 82
+G GPA P+G+ G+ G G G R P RP G RG A A G
Sbjct: 277 KGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGP 336
Query: 83 NG-------WGTVLVSGLV-PQDPRAAPPPGGRQLLLLR----PPRWVPSCFPNSQSADI 130
G G V G PQ PR + P G +R PP + P
Sbjct: 337 TGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQG-----VRGEPGPPGPAGAAGPAGNPGAD 391
Query: 131 SQEDRKPAKRRPTHFYHPDEHKAQ-PSHVRGSRRPGSPR--SASPGVGRSWASSWAGVPR 187
Q K A P P A+ PS +G P P+ S PG S + A
Sbjct: 392 GQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEP 451
Query: 188 QPLALDLRPTWKAPDARLALGSARG-PGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRA 246
P+ + P P ARG PG L P G R GP + P A
Sbjct: 452 GPVGVQGPP---GPAGEEGKRGARGEPG---PTGLPGPPGERG-GPGSRGFPG------A 498
Query: 247 PGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSP-RPNRHPR 305
G+A G G+PG P PK S G G+ GE G + L GSP P +
Sbjct: 499 DGVA----GPKGPAGERGSPG-PAGPKGSPGEAGRP-GEAGLPGAKGLTGSPGSPGPDGK 552
Query: 306 SGPVPAHGVASAAAGPATLRAPPGRGASSETM 337
+GP P GP PPG + M
Sbjct: 553 TGP-PGPAGQDGRPGPP---GPPGARGQAGVM 580
Score = 47.0 bits (110), Expect = 3e-05
Identities = 114/389 (29%), Positives = 133/389 (34%), Gaps = 88/389 (22%)
Query: 22 GSAGR-GRRGP----APRGQTGTQGV----GSGG--GGAGVR--PEPCAGQRPAGGKALR 68
G AG+ GR GP RGQ G G G+ G G AG R P P PAG
Sbjct: 557 GPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKD--- 613
Query: 69 GEGQAQAAQGYAAANGW-------GTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSC 121
GE AQ G A G G+ GL P A PPG +
Sbjct: 614 GEAGAQGPPGPAGPAGERGEQGPAGSPGFQGL----PGPAGPPG-------------EAG 656
Query: 122 FPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASS 181
P Q P+ R + P E Q G P PR A+ G A
Sbjct: 657 KPGEQGVPGDLGAPGPSGARGERGF-PGERGVQ-----GPPGPAGPRGANGAPGNDGAKG 710
Query: 182 WAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGAR-QLGPRTGAQPSR 240
AG P AP ++ A G PG R A L P+G R GP+ GA S
Sbjct: 711 DAGAP------------GAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPK-GADGS- 756
Query: 241 HRRQRAPGLALVVTGVSRIRPAHGAPGLPRAP--KPSAGRGGKEG--GERGTEMLRRLRG 296
PG GV + G PG AP K +G G G G RG R G
Sbjct: 757 ------PG----KDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPG 806
Query: 297 SPRPNRHPRSGPVPAHGVASAAAGPATLRA-----PPGRGASSETMWPTENLSSRRRAPP 351
P P +GP A G A P A PPG + P N+ AP
Sbjct: 807 PPGPAGF--AGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVG----APG 860
Query: 352 QR--RRTRAPSIARSLPGSGRLQGLIFPS 378
+ R + P A PG+ G PS
Sbjct: 861 AKGARGSAGPPGATGFPGAAGRVGPPGPS 889
Score = 43.9 bits (102), Expect = 3e-04
Identities = 92/339 (27%), Positives = 114/339 (33%), Gaps = 71/339 (20%)
Query: 16 GAGQAWGSAGR-GRRGPAPRGQTGTQGVGSGGGGAGVRPEPCA-GQRPAGG----KALRG 69
GA G+AG G +G RG +G G G AG + EP + G+ A G + L G
Sbjct: 251 GARGLPGTAGLPGMKGH--RGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPG 308
Query: 70 EGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSAD 129
E A G A A G + P A PPG FP + A
Sbjct: 309 ERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPG----------------FPGAVGA- 351
Query: 130 ISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQP 189
+ +A P RGS P R G + A+ AG P
Sbjct: 352 --------------------KGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNP--- 388
Query: 190 LALDLRPTWKAPDARLALGSARG-PGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPG 248
D +P K + + A G PG R P G + GP G P PG
Sbjct: 389 -GADGQPGAKGANGAPGIAGAPGFPGAR------GPSGPQ--GP--GGPPGPKGNSGEPG 437
Query: 249 LALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEG--GERGTEMLRRLRGSPRPNRHPRS 306
G A G PG P + G G+EG G RG L G P P S
Sbjct: 438 ----APGSKGDTGAKGEPG-PVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGS 492
Query: 307 GPVPAHGVASAAAGPATLRAPPG----RGASSETMWPTE 341
P + GPA R PG +G+ E P E
Sbjct: 493 RGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGE 531
Score = 38.5 bits (88), Expect = 0.011
Identities = 98/336 (29%), Positives = 113/336 (33%), Gaps = 75/336 (22%)
Query: 17 AGQAWGSAGRGRRGPAPRGQTGTQGVGSGGGGAGVRPEPCAGQRPAGGKALRGEGQAQAA 76
AG+ G RG GPA G+ G G G AG + P A PAG G
Sbjct: 901 AGKEGGKGPRGETGPA--GRPGEVGPPGPPGPAGEKGSPGA-DGPAGAPGTPGP------ 951
Query: 77 QGYAAANGWGTVLVSGLVPQDPRAAPP--PGGRQLLLLRPPRWVPSCFPNSQS-ADISQE 133
QG A G V GL Q P PG PS P Q + S E
Sbjct: 952 QGIAGQRG-----VVGLPGQRGERGFPGLPG-------------PSGEPGKQGPSGASGE 993
Query: 134 DRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGV----GRSWASSWAGVPRQP 189
P P P + PG R SPG G + + G P P
Sbjct: 994 RGPPGPMGPPGLAGPPGESGREGAPGAEGSPG--RDGSPGAKGDRGETGPAGPPGAPGAP 1051
Query: 190 LALD-LRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPR-----TGAQPSR--- 240
A + P K+ D R G A G + + P G + GPR TG Q R
Sbjct: 1052 GAPGPVGPAGKSGD-RGETGPAGPAGPVGPVGARGPAGPQ--GPRGDKGETGEQGDRGIK 1108
Query: 241 -HRR----QRAPGLALVVTGVSRIRPAHGA--PGLPRAPKPSAGRGGKEGGERGTEMLRR 293
HR Q PG G + GA P PR P SAG GK+G
Sbjct: 1109 GHRGFSGLQGPPG----PPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDG---------- 1154
Query: 294 LRGSPRPNRHPRSGPVPAHGVASAAAGPATLRAPPG 329
L G P P GP G + AGP PPG
Sbjct: 1155 LNGLPGP-----IGPPGPRG-RTGDAGPVGPPGPPG 1184
Score = 30.0 bits (66), Expect = 3.9
Identities = 37/137 (27%), Positives = 44/137 (32%), Gaps = 34/137 (24%)
Query: 264 GAPGLPRAPKPSA-----GRGGKEG------------------GERGTEMLRRLRGSP-R 299
G PGLP P P G GG G G R L G P
Sbjct: 136 GQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGA 195
Query: 300 PNRHPRSGPV--PAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTR 357
P GP P AS GP PPG+ ++ + + P R
Sbjct: 196 PGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNG--------DDGEAGKPGRPGERGPP 247
Query: 358 APSIARSLPGSGRLQGL 374
P AR LPG+ L G+
Sbjct: 248 GPQGARGLPGTAGLPGM 264
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 47.8 bits (112), Expect = 2e-05
Identities = 91/368 (24%), Positives = 119/368 (32%), Gaps = 63/368 (17%)
Query: 25 GRGRRGPAPRGQTGTQG-----VGSGG--GGAGVRPEPCAGQRPAGGKALRGEGQAQAAQ 77
G+ R P P+GQ G G VG G G G P Q P G + +GE A +
Sbjct: 25 GQDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQG----PAGEQGPRGDRGDKGEKGAPGPR 80
Query: 78 GYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKP 137
G G P +P PPG P P N + D K
Sbjct: 81 GRDGEPG---------TPGNPGPPGPPG---------PPGPPGLGGNFAAQMAGGFDEKA 122
Query: 138 AKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLR-- 195
AQ ++G P PR G + G P +P +
Sbjct: 123 GG-------------AQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGP 169
Query: 196 --------PTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAP 247
P K D G A PG+ P+GAR P T P + P
Sbjct: 170 MGPRGPPGPPGKPGDD----GEAGKPGKAGERGPPGPQGARGF-PGTPGLPGVKGHRGYP 224
Query: 248 GL--ALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPR 305
GL A G ++ G+PG +P P RG GERG G+ + P
Sbjct: 225 GLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLP--GERGRTGPAGAAGARGNDGQP- 281
Query: 306 SGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPSIARSL 365
GP G A GP AP +G + T + R P + P+ A
Sbjct: 282 -GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGN 340
Query: 366 PGSGRLQG 373
PG+ + G
Sbjct: 341 PGTDGIPG 348
Score = 45.4 bits (106), Expect = 9e-05
Identities = 102/381 (26%), Positives = 123/381 (32%), Gaps = 101/381 (26%)
Query: 14 AAGAGQAWGSAGR----GRRGP----------APRGQTGTQGVGSGGGGAGVRPEPCAGQ 59
A G+ A G AG G RGP P+GQTG G+ G G + EP
Sbjct: 349 AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEP---- 404
Query: 60 RPAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVP 119
PAG + G + +G G V + P R AP G
Sbjct: 405 GPAGPQGAPGPAGEEGKRGARGEPGG----VGPIGPPGERGAPGNRG------------- 447
Query: 120 SCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGS------PRSASP- 172
FP ++ P +R P+ P P PG+ P A P
Sbjct: 448 --FPGQDG--LAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQ 503
Query: 173 -GVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQL- 230
VG S A G P P R G+ PG+ L G R L
Sbjct: 504 GKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLP 563
Query: 231 ---------GPRTGAQPSRHR-RQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGG 280
GP A P+ R Q APG G GLP P P G GG
Sbjct: 564 GKDGETGAAGPPGPAGPAGERGEQGAPG-------------PSGFQGLPGPPGP-PGEGG 609
Query: 281 KEG-----------------------GERGTEMLRRLRGSPR--PNRHPRSGPVPAHGVA 315
K G GERG+ + L+G PR P GP A G A
Sbjct: 610 KPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQG-PRGLPGTPGTDGPKGASGPA 668
Query: 316 S--AAAGPATLRAPPG-RGAS 333
A GP L+ PG RGA+
Sbjct: 669 GPPGAQGPPGLQGMPGERGAA 689
Score = 43.5 bits (101), Expect = 3e-04
Identities = 99/423 (23%), Positives = 131/423 (30%), Gaps = 81/423 (19%)
Query: 18 GQAWGSAGRGRRG-PAPRGQTGTQGVGSGGG-----GAGVRPEPCAGQRPAGGKALRGEG 71
G A + RG G P P G G G G G GA P + P G + RGE
Sbjct: 267 GPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEP 326
Query: 72 QAQAAQGYAAANG----------WGTVLVSGLV----------PQDPRAAPPPGGRQLLL 111
+ G A A+G G+ G+ P P+ A P G +
Sbjct: 327 GTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQT 386
Query: 112 LRP----------PRWVPS-CFPNSQSADISQEDRKPAKRRP----------------TH 144
P P+ P P +E ++ A+ P
Sbjct: 387 GEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNR 446
Query: 145 FYHPDEHKAQPSHVRGSRRP---GSPRSASPGVGRSWASSWAGVPRQPLALDL--RPTWK 199
+ + A P G R P P+ A+ GR G P P A L RP
Sbjct: 447 GFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGR------PGEPGLPGARGLTGRPGDA 500
Query: 200 APDARLALGSARGPGRRLALHLQVPEGARQL-------GPR-TGAQPSRHRRQRAPGLAL 251
P + +G + PG P+GAR GP+ +P + + PG
Sbjct: 501 GPQGK--VGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPG--- 555
Query: 252 VVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPA 311
G+ + G G P P+ G E GE+G +G P P P G P
Sbjct: 556 -APGLRGLPGKDGETGAAGPPGPAGPAG--ERGEQGAPGPSGFQGLPGPPGPPGEGGKPG 612
Query: 312 -HGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPSIARSLPGSGR 370
GV A P + RG E P R P T P A G
Sbjct: 613 DQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPG 672
Query: 371 LQG 373
QG
Sbjct: 673 AQG 675
Score = 39.7 bits (91), Expect = 0.005
Identities = 89/320 (27%), Positives = 108/320 (33%), Gaps = 61/320 (19%)
Query: 17 AGQAWGSAGRGRRGP----APRGQTGTQGVGSGGGGAGVRPEPCAGQRPAGGKALRGEGQ 72
AG+ G GP P G+ G +G G G EP Q PAG +GE
Sbjct: 833 AGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGL-QGPAGPPGEKGEPG 891
Query: 73 AQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQ 132
G G GL Q P G++ P PS P Q A +
Sbjct: 892 DDGPSGAEGPPG-----PQGLAGQRGIVGLP--GQRGERGFPGLPGPSGEPGKQGAPGAS 944
Query: 133 EDR-KPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLA 191
DR P P P +P R GSP + P GR A+ G
Sbjct: 945 GDRGPPGPVGPPGLTGP---AGEPG------REGSPGADGPP-GRDGAAGVKG------- 987
Query: 192 LDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLAL 251
D T A+G+ PG P G+ TG Q R +
Sbjct: 988 -DRGETG-------AVGAPGAPG---------PPGSPGPAGPTGKQGDRGEAGAQGPMG- 1029
Query: 252 VVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEG--GERGTEMLRRLRGSPRPNRHPRSGPV 309
+G + R G G PR K AG G+ G G RG L+ L G P GP
Sbjct: 1030 -PSGPAGARGIQGPQG-PRGDKGEAGEPGERGLKGHRGFTGLQGLPGPP--------GPS 1079
Query: 310 PAHGVASAAAGPATLRAPPG 329
G AS AGP+ R PPG
Sbjct: 1080 GDQG-ASGPAGPSGPRGPPG 1098
Score = 30.0 bits (66), Expect = 3.9
Identities = 34/105 (32%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 13 LAAGAGQAWGSAGRGRRGPAPR-GQTGTQGVG--SGGGGAGVRPEPCAGQRPAGGKALRG 69
L AG+ G GP R G G +G +G GA P P PAG +G
Sbjct: 958 LTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQG 1017
Query: 70 EGQAQAAQGYAAANG-WGTVLVSGLVPQDPRA----APPPGGRQL 109
+ AQG +G G + G PQ PR A PG R L
Sbjct: 1018 DRGEAGAQGPMGPSGPAGARGIQG--PQGPRGDKGEAGEPGERGL 1060
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 47.8 bits (112), Expect = 2e-05
Identities = 114/445 (25%), Positives = 149/445 (33%), Gaps = 80/445 (17%)
Query: 2 RGLRACSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTG---TQGVGSGGGGAGVRPEPCAG 58
R RA L A A G+ G GPAP TQ SGGGG G P AG
Sbjct: 109 RSRRAAGPGLDCAGSAPAPSGAQSCG--GPAPASALRRPLTQWDASGGGGRGSHSGPRAG 166
Query: 59 QRPAGGKALRG----------------EGQAQAAQGYAAANGWGTVLVSGLVPQDPRA-- 100
P GG++ R +G ++ QG ++ WG SG P PRA
Sbjct: 167 -TPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSS--WGG---SG-TPPPPRALW 219
Query: 101 ---APPPGGRQLLLLRPPRWVP-SCFPNSQ--SADISQEDRKPAKRRPTHFYHPDEHKAQ 154
G R + R P S P S + + R + F P H
Sbjct: 220 NRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTS 279
Query: 155 PSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGPG 214
G R G S P + S A+ + +P +A P+ A RL G +
Sbjct: 280 -----GGRPTGERSSREPLLDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTV 334
Query: 215 RRLALHLQV-------PEGARQLGPRTGAQP-SRHRRQRAPGLALVVTGVSRIRPAHGAP 266
+ A+ + P R L P G++ +R R A + SR RP AP
Sbjct: 335 LKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTLPTPSRARPGKPAP 394
Query: 267 GLPRAPKPSAGRGGKEGGER--------------GTEMLRRLRGSPRPNRHPRSGPVPAH 312
P G GG G + GT L RGS P VP
Sbjct: 395 RGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHF 454
Query: 313 GVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRA-PSIARSLP----- 366
S+ A + R+P R L + R + PQ R A P IA P
Sbjct: 455 RPLSSPAPQSPPRSPSVRAFG-------PRLGAGRLSCPQAPRAAALPGIAVLAPSPAHD 507
Query: 367 -GSGRLQGL---IFPSTGKNVQRHK 387
G R +G P G+ +R K
Sbjct: 508 WGGQRCEGCGGGSQPFAGRRAERGK 532
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 47.8 bits (112), Expect = 2e-05
Identities = 114/445 (25%), Positives = 149/445 (33%), Gaps = 80/445 (17%)
Query: 2 RGLRACSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTG---TQGVGSGGGGAGVRPEPCAG 58
R RA L A A G+ G GPAP TQ SGGGG G P AG
Sbjct: 109 RSRRAAGPGLDCAGSAPAPSGAQSCG--GPAPASALRRPLTQWDASGGGGRGSHSGPRAG 166
Query: 59 QRPAGGKALRG----------------EGQAQAAQGYAAANGWGTVLVSGLVPQDPRA-- 100
P GG++ R +G ++ QG ++ WG SG P PRA
Sbjct: 167 -TPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSS--WGG---SG-TPPPPRALW 219
Query: 101 ---APPPGGRQLLLLRPPRWVP-SCFPNSQ--SADISQEDRKPAKRRPTHFYHPDEHKAQ 154
G R + R P S P S + + R + F P H
Sbjct: 220 NRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHSTS 279
Query: 155 PSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGPG 214
G R G S P + S A+ + +P +A P+ A RL G +
Sbjct: 280 -----GGRPTGERSSREPLLDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTV 334
Query: 215 RRLALHLQV-------PEGARQLGPRTGAQP-SRHRRQRAPGLALVVTGVSRIRPAHGAP 266
+ A+ + P R L P G++ +R R A + SR RP AP
Sbjct: 335 LKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTLPTPSRARPGKPAP 394
Query: 267 GLPRAPKPSAGRGGKEGGER--------------GTEMLRRLRGSPRPNRHPRSGPVPAH 312
P G GG G + GT L RGS P VP
Sbjct: 395 RGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHF 454
Query: 313 GVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRA-PSIARSLP----- 366
S+ A + R+P R L + R + PQ R A P IA P
Sbjct: 455 RPLSSPAPQSPPRSPSVRAFG-------PRLGAGRLSCPQAPRAAALPGIAVLAPSPAHD 507
Query: 367 -GSGRLQGL---IFPSTGKNVQRHK 387
G R +G P G+ +R K
Sbjct: 508 WGGQRCEGCGGGSQPFAGRRAERGK 532
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 47.4 bits (111), Expect = 2e-05
Identities = 89/364 (24%), Positives = 114/364 (31%), Gaps = 66/364 (18%)
Query: 20 AWGSAGRGRRGPAPRGQTGTQGVGSGGGGAGVRPEPCAGQRPAGGKALRGEGQAQAAQGY 79
A G+ G +P G G G G PEP P G+A G G Q
Sbjct: 54 AAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEP-----PPAGRARPGGGGPQRP--- 105
Query: 80 AAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAK 139
+ ++ +G P + PPP G SC P +A ++ +PA
Sbjct: 106 GPPSPRRPLVPAGPAPPAAKLRPPPEGS----------AGSCAPVPAAAAVA-AGPEPAP 154
Query: 140 RRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWK 199
P A P+ + PG PG G P +P T
Sbjct: 155 AGPA-------KPAGPAALAARAGPGPGPGPGPGPGPG--------PGKPAGPGAAQTLN 199
Query: 200 APDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGV--S 257
A L A P L V G L P + APG + +
Sbjct: 200 GSAALLNSHHAAAPAVSL-----VNNGPAALLPLP--------KPAAPGTVIQTPPFVGA 246
Query: 258 RIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPR--PNRHPRSGPV------ 309
PA AP P AP P+A L R G P P P P
Sbjct: 247 AAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNG 306
Query: 310 ----PAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPSIARSL 365
A A AA GPA + PG GA++ P S P+R AP A++L
Sbjct: 307 GSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAES-----PKRVVQAAPPAAQTL 361
Query: 366 PGSG 369
SG
Sbjct: 362 AASG 365
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 47.0 bits (110), Expect = 3e-05
Identities = 99/394 (25%), Positives = 125/394 (31%), Gaps = 85/394 (21%)
Query: 26 RGRRGP-APRGQTGTQGVGSGGG-GAGVRPEPCAGQRPAGGKALRGEGQAQAAQGYAAAN 83
RGR GP PRG+ G G G G GA P P G +G + QG
Sbjct: 623 RGREGPMGPRGEAGPPGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPV 682
Query: 84 GW----GTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAK 139
G G V + G V D PPG + + PR + +P
Sbjct: 683 GLQGLRGEVGLPG-VKGDKGPMGPPGPKGDQGEKGPRGLTG---------------EPGM 726
Query: 140 RR-PTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTW 198
R P P +G+ P P G + G+ P
Sbjct: 727 RGLPGAVGEPG--------AKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPP--------- 769
Query: 199 KAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSR 258
G + PG+ Q P+G P T +P APG + G S
Sbjct: 770 ---------GPSGDPGKPGLTGPQGPQGL----PGTPGRPGIKGEPGAPGKIVTSEGSSM 816
Query: 259 IRP--------AHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVP 310
+ A G PG P AP P AG G G + + L+G P P PR P P
Sbjct: 817 LTVPGPPGPPGAMGPPGPPGAPGP-AGPAGLPGHQE----VLNLQGPPGPPG-PRGPPGP 870
Query: 311 AHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRR---------APPQRRRTRAPSI 361
+ GP R PPG G P LS+ PP + + P
Sbjct: 871 S------IPGPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPG 924
Query: 362 ARSLPGSGRLQGLI---FPSTGKNVQRHKSPPLP 392
R G L G S G N+Q PP P
Sbjct: 925 PRGHQGEQGLPGFSTSGSSSFGLNLQGPPGPPGP 958
Score = 39.7 bits (91), Expect = 0.005
Identities = 85/323 (26%), Positives = 102/323 (31%), Gaps = 54/323 (16%)
Query: 22 GSAG-RGRRGPAP----RGQTGTQGVGSGGGGAGVRPEPCAGQRPAGGKALRGEGQAQAA 76
GS G +G GP RG+ G GV G G P P Q G + L GE +
Sbjct: 671 GSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPMGP-PGPKGDQGEKGPRGLTGEPGMRGL 729
Query: 77 QGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRK 136
G G + P P P G Q L P P S D
Sbjct: 730 PGAVGEPG----AKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPP----GPSGD------- 774
Query: 137 PAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRP 196
P K T P P PG+P G SS VP P
Sbjct: 775 PGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEG----SSMLTVPGPPGPPGAMG 830
Query: 197 TWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGV 256
P A G A PG + L+LQ P G GPR PS PG
Sbjct: 831 PPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPP--GPRGPPGPSI---PGPPG-------- 877
Query: 257 SRIRPAHGAPGLPRAPKPS--------AGRGGKEG--GERGTEMLRRLRGSPRPNRHPRS 306
R P G PG P P +G G G G +G + G P P H
Sbjct: 878 PRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQ------GPPGPRGHQGE 931
Query: 307 GPVPAHGVASAAAGPATLRAPPG 329
+P + +++ L+ PPG
Sbjct: 932 QGLPGFSTSGSSSFGLNLQGPPG 954
Score = 31.2 bits (69), Expect = 1.7
Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 26 RGRRGP-APRGQTGTQGV------GSGGGGAGVR--PEPCAGQRPAGGKALRG-EGQAQA 75
+G +GP PRG G QG+ GS G ++ P P Q P G K G G
Sbjct: 917 KGDQGPPGPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGPPGPQGPKGDKGDPGVPGALGI 976
Query: 76 AQGYAAANGWGTVLVSGLVPQDPRAAPPPG 105
G + T+ VSG P P PPG
Sbjct: 977 PSGPSEGGSSSTMYVSG-PPGPPGPPGPPG 1005
Score = 29.6 bits (65), Expect = 5.0
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Query: 13 LAAGAGQAWGSAGRGRRGPAPRGQTGTQGVGSGGGGA------GVRPEPCAGQRPAGGKA 66
L+ A + GS+ RG + + + +GGGGA G E + P G
Sbjct: 1282 LSTDASHSRGSSSSSHSSSVRRGSSYSSSMSTGGGGAGSLGAGGAFGEAAGDRGPYGTDI 1341
Query: 67 LRGEGQAQAAQG--YAAANG 84
G G AA+G YA G
Sbjct: 1342 GPGGGYGAAAEGGMYAGNGG 1361
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 45.8 bits (107), Expect = 7e-05
Identities = 94/386 (24%), Positives = 122/386 (31%), Gaps = 76/386 (19%)
Query: 7 CSRDLRLAAGAGQAWGSAGRGRRGPAPRGQTGTQG-----VGSGG--GGAGVRPEPCAGQ 59
C DL A+G P P+GQ G G VG G G G P Q
Sbjct: 89 CPTDLATASGQ-------------PGPKGQKGEPGDIKDIVGPKGPPGPQG----PAGEQ 131
Query: 60 RPAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVP 119
P G + +GE A +G G P +P PPG P P
Sbjct: 132 GPRGDRGDKGEKGAPGPRGRDGEPG---------TPGNPGPPGPPG---------PPGPP 173
Query: 120 SCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWA 179
N + D K AQ ++G P PR G
Sbjct: 174 GLGGNFAAQMAGGFDEKAGG-------------AQLGVMQGPMGPMGPRGPPGPAGAPGP 220
Query: 180 SSWAGVPRQPLALDLR----------PTWKAPDARLALGSARGPGRRLALHLQVPEGARQ 229
+ G P +P + P K D G A PG+ P+GAR
Sbjct: 221 QGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDD----GEAGKPGKAGERGPPGPQGARG 276
Query: 230 LGPRTGAQPSRHRRQRAPGL--ALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERG 287
P T P + PGL A G ++ G+PG +P P RG GERG
Sbjct: 277 F-PGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLP--GERG 333
Query: 288 TEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRR 347
G+ + P GP G A GP AP +G + T +
Sbjct: 334 RTGPAGAAGARGNDGQP--GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGP 391
Query: 348 RAPPQRRRTRAPSIARSLPGSGRLQG 373
R P + P+ A PG+ + G
Sbjct: 392 RGEPGTPGSPGPAGASGNPGTDGIPG 417
Score = 45.4 bits (106), Expect = 9e-05
Identities = 102/381 (26%), Positives = 123/381 (32%), Gaps = 101/381 (26%)
Query: 14 AAGAGQAWGSAGR----GRRGP----------APRGQTGTQGVGSGGGGAGVRPEPCAGQ 59
A G+ A G AG G RGP P+GQTG G+ G G + EP
Sbjct: 418 AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEP---- 473
Query: 60 RPAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVP 119
PAG + G + +G G V + P R AP G
Sbjct: 474 GPAGPQGAPGPAGEEGKRGARGEPGG----VGPIGPPGERGAPGNRG------------- 516
Query: 120 SCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGS------PRSASP- 172
FP ++ P +R P+ P P PG+ P A P
Sbjct: 517 --FPGQDG--LAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQ 572
Query: 173 -GVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQL- 230
VG S A G P P R G+ PG+ L G R L
Sbjct: 573 GKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLP 632
Query: 231 ---------GPRTGAQPSRHR-RQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGG 280
GP A P+ R Q APG G GLP P P G GG
Sbjct: 633 GKDGETGAAGPPGPAGPAGERGEQGAPG-------------PSGFQGLPGPPGP-PGEGG 678
Query: 281 KEG-----------------------GERGTEMLRRLRGSPR--PNRHPRSGPVPAHGVA 315
K G GERG+ + L+G PR P GP A G A
Sbjct: 679 KPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQG-PRGLPGTPGTDGPKGASGPA 737
Query: 316 S--AAAGPATLRAPPG-RGAS 333
A GP L+ PG RGA+
Sbjct: 738 GPPGAQGPPGLQGMPGERGAA 758
Score = 39.7 bits (91), Expect = 0.005
Identities = 89/320 (27%), Positives = 108/320 (33%), Gaps = 61/320 (19%)
Query: 17 AGQAWGSAGRGRRGP----APRGQTGTQGVGSGGGGAGVRPEPCAGQRPAGGKALRGEGQ 72
AG+ G GP P G+ G +G G G EP Q PAG +GE
Sbjct: 902 AGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGL-QGPAGPPGEKGEPG 960
Query: 73 AQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQ 132
G G GL Q P G++ P PS P Q A +
Sbjct: 961 DDGPSGAEGPPG-----PQGLAGQRGIVGLP--GQRGERGFPGLPGPSGEPGKQGAPGAS 1013
Query: 133 EDR-KPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLA 191
DR P P P +P R GSP + P GR A+ G
Sbjct: 1014 GDRGPPGPVGPPGLTGP---AGEPG------REGSPGADGPP-GRDGAAGVKG------- 1056
Query: 192 LDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLAL 251
D T A+G+ PG P G+ TG Q R +
Sbjct: 1057 -DRGETG-------AVGAPGAPG---------PPGSPGPAGPTGKQGDRGEAGAQGPMG- 1098
Query: 252 VVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEG--GERGTEMLRRLRGSPRPNRHPRSGPV 309
+G + R G G PR K AG G+ G G RG L+ L G P GP
Sbjct: 1099 -PSGPAGARGIQGPQG-PRGDKGEAGEPGERGLKGHRGFTGLQGLPGPP--------GPS 1148
Query: 310 PAHGVASAAAGPATLRAPPG 329
G AS AGP+ R PPG
Sbjct: 1149 GDQG-ASGPAGPSGPRGPPG 1167
Score = 30.0 bits (66), Expect = 3.9
Identities = 34/105 (32%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 13 LAAGAGQAWGSAGRGRRGPAPR-GQTGTQGVG--SGGGGAGVRPEPCAGQRPAGGKALRG 69
L AG+ G GP R G G +G +G GA P P PAG +G
Sbjct: 1027 LTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQG 1086
Query: 70 EGQAQAAQGYAAANG-WGTVLVSGLVPQDPRA----APPPGGRQL 109
+ AQG +G G + G PQ PR A PG R L
Sbjct: 1087 DRGEAGAQGPMGPSGPAGARGIQG--PQGPRGDKGEAGEPGERGL 1129
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 45.4 bits (106), Expect = 9e-05
Identities = 85/320 (26%), Positives = 106/320 (33%), Gaps = 76/320 (23%)
Query: 22 GSAG-RGRRG----PAPRGQTGTQGVGSGGGGAGVRPEPCAGQR----PAGGKALRGEGQ 72
G AG RG G P P+G TG G G AG+ AG R P G +G
Sbjct: 481 GPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGL-----AGARGAPGPDGNNGAQGPPG 535
Query: 73 AQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQ 132
Q QG G PPG PP + P+ + ++
Sbjct: 536 PQGVQGGKGEQG------------------PPG--------PPGFQGLPGPSGPAGEVG- 568
Query: 133 EDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLAL 192
KP +R H + P+ RG R P A+ G + +G P
Sbjct: 569 ---KPGERG----LHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPP------ 615
Query: 193 DLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQ--PSRHRRQRAPGLA 250
PD G+ PG A+ P G L GA P + PGL
Sbjct: 616 -------GPD-----GNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLR 663
Query: 251 LVVTGVSRIRPAHGAPGLPRAPKPSAGRGGK-EGGERGTEMLRRLRGSPRPNRHPRSGPV 309
+ R A GAPG AP P+ G + E G G RGS P GP
Sbjct: 664 GEIGNPGR-DGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGS--PGERGEVGPA 720
Query: 310 PAHGVASAAAGPATLRAPPG 329
+G AGPA PG
Sbjct: 721 GPNGF----AGPAGAAGQPG 736
Score = 41.2 bits (95), Expect = 0.002
Identities = 105/396 (26%), Positives = 127/396 (32%), Gaps = 87/396 (21%)
Query: 31 PAPRGQTGTQGVGSG------GGGAGVRPEPCAGQRPAGGKALRGEGQAQAAQGYAAANG 84
P P G G G+G G G G+ P P P G G Q QG A
Sbjct: 62 PGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGE-- 119
Query: 85 WGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAK-RRPT 143
P +P P G R P+ P + ED P K RP
Sbjct: 120 ----------PGEPGQTGPAGARG----------PAGPPGK-----AGEDGHPGKPGRP- 153
Query: 144 HFYHPDEHKAQPSHVRGSRRPGSPRSASPGV-GRSWASSWAGVPRQPLALDLRPTWKAPD 202
+ P RG PG+P PG G + G+ QP A ++ AP
Sbjct: 154 ----GERGVVGPQGARGF--PGTP--GLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPG 205
Query: 203 ARLALG--SARG-PGRRLALHLQVPEGAR----QLGPRTGAQPSRHRR----QRAPGLAL 251
G ARG PG R + P GAR +GP A P APG
Sbjct: 206 ENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKG 265
Query: 252 VVTGVSRIRPAH--------GAPGL--PRAPKPSAGRGGKEG--GERGTEMLRRLRGSPR 299
+ V PA G PGL P P + G G G G G + G P
Sbjct: 266 EIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPG 325
Query: 300 PNRHPRSGPVPAHGVASAAA-----GPATLRAPPGR-------------GASSETMWPTE 341
P P GPV A G A GPA + G G S E
Sbjct: 326 PRGIP--GPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGP 383
Query: 342 NLSSRRRAPPQRRRTRAPSIARSLPGSGRLQGLIFP 377
N + PP R +R LPG+ G++ P
Sbjct: 384 NGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGP 419
Score = 38.1 bits (87), Expect = 0.014
Identities = 88/315 (27%), Positives = 113/315 (35%), Gaps = 57/315 (18%)
Query: 22 GSAGR-GRRGPAPRGQTGTQGVGSGGGGAGVRPEPCAGQR-PAGGKALRGEGQAQAAQGY 79
G AG+ G RGP RG G VG G V P AG++ P+G G QG
Sbjct: 811 GPAGKEGLRGP--RGDQGP--VGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGL 866
Query: 80 AAANGW----------GTVLVSGLV--PQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQS 127
A G G V+G V P A PPG R PP V S N
Sbjct: 867 LGAPGILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGARG-----PPGAVGSPGVNGAP 921
Query: 128 ADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPR 187
+ + D P P QP H +G R G P + P VG + A G P
Sbjct: 922 GEAGR-DGNPGNDGPPG------RDGQPGH-KGER--GYPGNIGP-VGAAGAPGPHG-PV 969
Query: 188 QPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAP 247
P P + A GP + P G + + G +P + P
Sbjct: 970 GPAGKHGNRGETGPSGPVGPAGAVGP--------RGPSGPQGIRGDKG-EPGEKGPRGLP 1020
Query: 248 GLA-----LVVTGVSRIRPAHGAPGL-----PRAPKPSAGRGGKEG--GERGTEMLRRLR 295
GL + G++ GAPG PR P +G GK+G G GT +R
Sbjct: 1021 GLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIR 1080
Query: 296 GSPRPNRHPRSGPVP 310
G P+ ++ P P P
Sbjct: 1081 G-PQGHQGPAGPPGP 1094
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 45.4 bits (106), Expect = 9e-05
Identities = 96/384 (25%), Positives = 118/384 (30%), Gaps = 65/384 (16%)
Query: 3 GLRACSRDLRLAAGAGQAWGSAGRGRRGP-APRGQTGTQGVGSGGGGAGV--RPEPCAGQ 59
GLR D L G G GP P G G +G G G+ RP P
Sbjct: 1054 GLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPP 1113
Query: 60 RPAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVP 119
PAG K GE + QG A +G Q P P P G + PP
Sbjct: 1114 GPAGEKGAPGE---KGPQGPAGRDGL----------QGPVGLPGPAGP----VGPPG--- 1153
Query: 120 SCFPNSQSADISQEDRKPAK-----RRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGV 174
+ +I + +K +K + P P QP PG PR
Sbjct: 1154 ---EDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPG-PRGQQGLF 1209
Query: 175 GRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGA----RQL 230
G+ G P P + L+ P + G G + P GA
Sbjct: 1210 GQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQ 1269
Query: 231 GPRTG-AQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTE 289
GP G P + PG A G PGLP P +G E GE+G
Sbjct: 1270 GPPGGIGNPGAVGEKGEPGEA-------------GEPGLPGEGGPPGPKG--ERGEKGES 1314
Query: 290 MLRRLRGSPRPNRHP-------RSGPV--PAHGVASAAAGPATLRAPPG----RGASSET 336
G P P P GPV P GPA PPG G +T
Sbjct: 1315 GPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQT 1374
Query: 337 MWPTENLSSRRRAPPQRRRTRAPS 360
P PP +R P+
Sbjct: 1375 GSPGPTGEPGPSGPPGKRGPPGPA 1398
Score = 35.8 bits (81), Expect = 0.070
Identities = 74/298 (24%), Positives = 93/298 (31%), Gaps = 52/298 (17%)
Query: 25 GRGRRG-PAPRGQTGTQGVGSGGGGAGVRPEP-----CAGQRPAGGKALRGEGQAQAAQG 78
GRG G P PRGQ G G G G+ +P G PAG RG Q G
Sbjct: 899 GRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTG 958
Query: 79 YAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPA 138
+ P+ P P G+ L P + + F K
Sbjct: 959 FPG----------------PKGPPGPPGKDGLPGHPGQRGETGFQG-----------KTG 991
Query: 139 KRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPG-VGRSWASSWAGVPRQPLALDLRPT 197
P P + + PG P PG G + G P L
Sbjct: 992 PPGPPGVVGPQGPTGETGPMGERGHPGPP--GPPGEQGLPGLAGKEGTKGDPGPAGLPGK 1049
Query: 198 WKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVS 257
P R G PG AL L+ E GP P+ +R P A G+
Sbjct: 1050 DGPPGLRGFPGDRGLPGPVGALGLKGNE-----GPPGPPGPAGSPGERGPAGAAGPIGI- 1103
Query: 258 RIRPAHGAPGLPRAPKPSAGRGGKEG--GERGTEMLRRLRGSPRPNRHPRSGPVPAHG 313
P P P P G G++G G G + L+ G P P +GPV G
Sbjct: 1104 ---PGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGP-----AGPVGPPG 1153
Score = 28.9 bits (63), Expect = 8.6
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 18 GQAWGSAGRGRRGP-APRGQTGTQGVGSGGGGAGVRPEPCAGQRPAGGKALRGEGQAQAA 76
G+ S G+RGP P G G QG G AG+ P P G + G+
Sbjct: 1381 GEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPP-GKTGPIGPQGAPGKPGPDGL 1439
Query: 77 QGYAAANGWGTVLVSGLVPQDPRAAPPPG 105
+G G V GL P P PPG
Sbjct: 1440 RGIP-----GPVGEQGL-PGSPGPDGPPG 1462
>gi|239756845 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 45.1 bits (105), Expect = 1e-04
Identities = 64/251 (25%), Positives = 85/251 (33%), Gaps = 63/251 (25%)
Query: 25 GRGRRGPAPRGQTGTQGVGSGGGGAGVRPEPCAGQRPAGGKALRGEGQAQAAQGYAAANG 84
G G P P G +G +GGGG G+ + QR AG A R G A + G
Sbjct: 20 GDGDEAPGPGGG---EGAAAGGGGGGLGSGGRSAQRRAGAGARRPIGAAPSVGPGGELQG 76
Query: 85 WGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSC---FPNSQSADISQEDRKPAKR- 140
WG SG P P GGR+L PPR + P +Q+A + R P+ R
Sbjct: 77 WGR--KSGCRPPGPEGW--AGGRKLRRWLPPRRFSNFCCRSPCAQTAVRRRRRRAPSPRG 132
Query: 141 -----------------------------------RPTHFYHPDEHKAQPSHVRGSRR-- 163
P H + +A+P R RR
Sbjct: 133 AGWREGAGAGRGTPATMAGGEWAAEPLHLPQRGRPAPLHLPEREATEARPRRRRARRRLR 192
Query: 164 ---PGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGP------G 214
P P G+GR W G+ L + + AP +AR P G
Sbjct: 193 VLEPHPPARLGRGIGRVWVK---GITAWGLEGHI---FSAPRISATASTARRPTVVQRWG 246
Query: 215 RRLALHLQVPE 225
R A +VP+
Sbjct: 247 ARAAFPSRVPD 257
>gi|169211031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 45.1 bits (105), Expect = 1e-04
Identities = 64/251 (25%), Positives = 85/251 (33%), Gaps = 63/251 (25%)
Query: 25 GRGRRGPAPRGQTGTQGVGSGGGGAGVRPEPCAGQRPAGGKALRGEGQAQAAQGYAAANG 84
G G P P G +G +GGGG G+ + QR AG A R G A + G
Sbjct: 20 GDGDEAPGPGGG---EGAAAGGGGGGLGSGGRSAQRRAGAGARRPIGAAPSVGPGGELQG 76
Query: 85 WGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSC---FPNSQSADISQEDRKPAKR- 140
WG SG P P GGR+L PPR + P +Q+A + R P+ R
Sbjct: 77 WGR--KSGCRPPGPEGW--AGGRKLRRWLPPRRFSNFCCRSPCAQTAVRRRRRRAPSPRG 132
Query: 141 -----------------------------------RPTHFYHPDEHKAQPSHVRGSRR-- 163
P H + +A+P R RR
Sbjct: 133 AGWREGAGAGRGTPATMAGGEWAAEPLHLPQRGRPAPLHLPEREATEARPRRRRARRRLR 192
Query: 164 ---PGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGP------G 214
P P G+GR W G+ L + + AP +AR P G
Sbjct: 193 VLEPHPPARLGRGIGRVWVK---GITAWGLEGHI---FSAPRISATASTARRPTVVQRWG 246
Query: 215 RRLALHLQVPE 225
R A +VP+
Sbjct: 247 ARAAFPSRVPD 257
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 45.1 bits (105), Expect = 1e-04
Identities = 104/418 (24%), Positives = 139/418 (33%), Gaps = 99/418 (23%)
Query: 16 GAGQAWGSAGRGRRGPAPRGQTGTQGVGSGGGG---------AGV--------RPEPCAG 58
GAG G G G G G G G GGGG AG+ R G
Sbjct: 64 GAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGG 123
Query: 59 QRPAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWV 118
RP L G++ +A+ ++ +G G V R+ PP R + PPR
Sbjct: 124 SRP---PLLPPGGRSTSAKPFSPPSGPGRFPVPS---PGHRSGPPEPQRN--RMPPPR-- 173
Query: 119 PSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRR-PGSPRSASPGV--- 174
P+ S S P+ RP H RGS PG PR SPG
Sbjct: 174 ----PDVGSKPDSIPPPVPSTPRPIQ---------SSPHNRGSPPVPGGPRQPSPGPTPP 220
Query: 175 ----GRSWASSWAGVPRQPLA----LDLRPTWKAPDARLALGSARGP-----GRRLALHL 221
R A + + PL+ RP +R AL P G R ++H
Sbjct: 221 PFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSR-ALDDKPPPPPPPVGNRPSIHR 279
Query: 222 QV--PEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRG 279
+ P + P + P +AP P PG P P P + G
Sbjct: 280 EAVPPPPPQNNKPPVPSTPRPSASSQAPPPP----------PPPSRPGPP--PLPPSSSG 327
Query: 280 GKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWP 339
E L +P RSGP+P + P +R PPGR
Sbjct: 328 NDETPRLPQRNLSLSSSTPPLPSPGRSGPLPP---PPSERPPPPVRDPPGRSGP------ 378
Query: 340 TENLSSRRRAPPQRRRTRAPSIARSLPGSGRL---QGLIFPSTGKNVQRHKSPPLPSE 394
PP +R S +R+LP + +L G+ P +G PPLP +
Sbjct: 379 ---------LPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSGPR------PPLPPD 421
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 45.1 bits (105), Expect = 1e-04
Identities = 104/418 (24%), Positives = 139/418 (33%), Gaps = 99/418 (23%)
Query: 16 GAGQAWGSAGRGRRGPAPRGQTGTQGVGSGGGG---------AGV--------RPEPCAG 58
GAG G G G G G G G GGGG AG+ R G
Sbjct: 64 GAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGG 123
Query: 59 QRPAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWV 118
RP L G++ +A+ ++ +G G V R+ PP R + PPR
Sbjct: 124 SRP---PLLPPGGRSTSAKPFSPPSGPGRFPVPS---PGHRSGPPEPQRN--RMPPPR-- 173
Query: 119 PSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRR-PGSPRSASPGV--- 174
P+ S S P+ RP H RGS PG PR SPG
Sbjct: 174 ----PDVGSKPDSIPPPVPSTPRPIQ---------SSPHNRGSPPVPGGPRQPSPGPTPP 220
Query: 175 ----GRSWASSWAGVPRQPLA----LDLRPTWKAPDARLALGSARGP-----GRRLALHL 221
R A + + PL+ RP +R AL P G R ++H
Sbjct: 221 PFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSR-ALDDKPPPPPPPVGNRPSIHR 279
Query: 222 QV--PEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRG 279
+ P + P + P +AP P PG P P P + G
Sbjct: 280 EAVPPPPPQNNKPPVPSTPRPSASSQAPPPP----------PPPSRPGPP--PLPPSSSG 327
Query: 280 GKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWP 339
E L +P RSGP+P + P +R PPGR
Sbjct: 328 NDETPRLPQRNLSLSSSTPPLPSPGRSGPLPP---PPSERPPPPVRDPPGRSGP------ 378
Query: 340 TENLSSRRRAPPQRRRTRAPSIARSLPGSGRL---QGLIFPSTGKNVQRHKSPPLPSE 394
PP +R S +R+LP + +L G+ P +G PPLP +
Sbjct: 379 ---------LPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSGPR------PPLPPD 421
>gi|13129104 coiled-coil domain containing 86 [Homo sapiens]
Length = 360
Score = 45.1 bits (105), Expect = 1e-04
Identities = 57/231 (24%), Positives = 90/231 (38%), Gaps = 37/231 (16%)
Query: 156 SHVRGSRRPGSPRS---ASPGVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARG 212
S+ +R PGSP S A G + G PR L P+ A
Sbjct: 37 SNPEETREPGSPPSVQRAGLGSPERPPKTSPGSPRLQQGAGLESPQGQPEP-----GAAS 91
Query: 213 PGRRLALHLQVPEGARQLGP---RTGAQPSRHRRQRAPGLALVVTGVSRIR-------PA 262
P R+ LHL+ P+ + P R +PS + + ++ + +++ + P
Sbjct: 92 PQRQQDLHLESPQRQPEYSPESPRCQPKPSEEAPKCSQDQGVLASELAQNKEELTPGAPQ 151
Query: 263 HGAPGLPRAPKPSAGRG--GKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAG 320
H P +P +P+P G+ G E + E+ R GSPR +H S P PA + G
Sbjct: 152 HQLPPVPGSPEPYPGQQAPGPEPSQPLLELTPRAPGSPR-GQHEPSKPPPAGETVTGGFG 210
Query: 321 PATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPSIARSLPGSGRL 371
A +G+SS+ A + + P I + P SGR+
Sbjct: 211 -----AKKRKGSSSQA-----------PASKKLNKEELPVIPKGKPKSGRV 245
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 44.7 bits (104), Expect = 2e-04
Identities = 89/332 (26%), Positives = 117/332 (35%), Gaps = 40/332 (12%)
Query: 6 ACSRDLRLAAGAGQAWGSAG-RGRRG----PAPRGQTGTQGVGSGGGGAGVRPEPCAGQR 60
+C + A G Q G G RG G P RG+ G QG+ G G P A
Sbjct: 234 SCILAAKTAPGLKQLNGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGA--- 290
Query: 61 PAGGKALRGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAP--PPG--GRQLLLLRPPR 116
G +RGE Q +G G + G + A P PPG G L PR
Sbjct: 291 -PGFPGVRGEKGDQGEKGELGLPG-----LKGDRGEKGEAGPAGPPGLPGTTSLFTPHPR 344
Query: 117 WVPSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSA-SPGV- 174
P + D + RP P P G+P +A +PG
Sbjct: 345 MPGEQGPKGEKGDPGLPGEPGLQGRPGEL-GPQGPTGPPGAKGQEGAHGAPGAAGNPGAP 403
Query: 175 GRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQL-GPR 233
G A +G P A LR T R G+A G + + GA L GP
Sbjct: 404 GHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPP 463
Query: 234 TGAQPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRAP----KPSAGRGGKEG-----G 284
+ + +PGL G + GAPG+P +P P G G G G
Sbjct: 464 GKGKDGEPGLRGSPGLP----GPLGTKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPG 519
Query: 285 ERGTEMLRRLRGSPRPNRHPRSGPVPAHGVAS 316
++G+ R L G P P GP G++S
Sbjct: 520 DKGSPGSRGLPGFPGP-----QGPAGRDGLSS 546
Score = 42.7 bits (99), Expect = 6e-04
Identities = 81/319 (25%), Positives = 105/319 (32%), Gaps = 49/319 (15%)
Query: 31 PAPRGQTGTQGVGSGGGGAGV-----RPEPCAGQRPAGGKALRGEGQAQAAQGYAAANGW 85
P +GQ G G G G P P G LRG +G A G
Sbjct: 382 PGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERGEKGAAG- 440
Query: 86 GTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAKRRPTHF 145
+P P G PR P P +D +P R
Sbjct: 441 ------------EEGSPGPVG--------PRGDPGA-PGLPGPPGKGKDGEPGLRGSPGL 479
Query: 146 YHPDEHKAQPSHVRGSRR-PGSPRS-ASPGVGRSWASSWAGVPRQPLALDLR-----PTW 198
P K RG+ PGSP S PG+G + +G P + R P
Sbjct: 480 PGPLGTKGD----RGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGP 535
Query: 199 KAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVVTGVSR 258
+ P R L S PG L V P P + PG G
Sbjct: 536 QGPAGRDGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKP-GREGTEG 594
Query: 259 IRPAHGAPGLP-----RAPKPSAGRGGKEG--GERGTEMLRRLRGSPRPNRHPRSGPVPA 311
+ G PGLP P+ S G G +G G++G + + G P +P GP A
Sbjct: 595 KKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNP--GPPGA 652
Query: 312 HGVASAAAGPATLRAPPGR 330
G+A AAGP ++ PG+
Sbjct: 653 DGIA-GAAGPPGIQGSPGK 670
Score = 29.3 bits (64), Expect = 6.6
Identities = 80/341 (23%), Positives = 105/341 (30%), Gaps = 70/341 (20%)
Query: 26 RGRRG-PAPRGQTGTQGVGSGGGGAGVRPEP--CAGQRPAGGKALRGEGQAQAAQGYAAA 82
+G +G P G+ GT+G G G+ P Q G + GE + QG+
Sbjct: 578 KGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGV 637
Query: 83 NGWGTVLVSGLVPQDPRAAP-PPGGRQLLLLRPPRWVPSCFPNSQSADISQEDRKPAKRR 141
G+ P P PPG + P P Q + P K
Sbjct: 638 PGF----------MGPPGNPGPPGADGIAGAAGP-------PGIQGS--------PGKEG 672
Query: 142 PTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLR--PTWK 199
P P P R G P G AG P P R P +K
Sbjct: 673 PPGPQGPSGLPGIPGEEGKEGRDGKP-------GPPGEPGKAGEPGLPGPEGARGPPGFK 725
Query: 200 APDARLALGSARGPGRRLALHLQ--VPEGARQLGPRTGAQ--------PSRHRRQRAPGL 249
RG + L Q +P GP TG Q P ++ +PG
Sbjct: 726 GHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGP-TGPQGPQGPRGPPGKNGSPGSPGE 784
Query: 250 A--LVVTGVSRIRPAHGAPGLP-----RAPKPSAGRGG---KEG-----------GERGT 288
G + +G+PGLP R P G G KEG GERG
Sbjct: 785 PGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEPGFKGERGD 844
Query: 289 EMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLRAPPG 329
++ +G P P +P H + GP L G
Sbjct: 845 PGIKGDKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENG 885
>gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo
sapiens]
Length = 193
Score = 44.7 bits (104), Expect = 2e-04
Identities = 48/158 (30%), Positives = 56/158 (35%), Gaps = 37/158 (23%)
Query: 219 LHLQVP----EGARQLGPRTGAQPSRHRRQ------RAPGLALVVTGVSRIRPAHGAPGL 268
L LQVP EG L + +P + +RQ R+P A V +R P
Sbjct: 35 LQLQVPLSGAEGKELLAAQAAHRPRQQQRQQQRPRPRSPDPAARGQHVPELRSRKPGPAA 94
Query: 269 ---------------PRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHG 313
P P P G GGER E R PRP PR P+ A G
Sbjct: 95 RTEEGGDVTGRPWQPPLLPPPGVPTPGNRGGERRGER----RAPPRPAGAPRGSPMAARG 150
Query: 314 VASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPP 351
A A P L G GA P S+R APP
Sbjct: 151 RARGEAEPPAL----GAGACDSRNQP----DSQRTAPP 180
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 44.3 bits (103), Expect = 2e-04
Identities = 69/266 (25%), Positives = 86/266 (32%), Gaps = 48/266 (18%)
Query: 94 VPQDPRAAPPPGGRQLL-------LLRPPRWVPSCFPNSQSADISQED------RKPAKR 140
+P P A PPP L L PP P P S SA + + P
Sbjct: 776 LPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVL 835
Query: 141 RPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKA 200
P A P+ ++ RRP +P + G + A P P + T
Sbjct: 836 AAPLLQVPPSPPASPT-LQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSG 894
Query: 201 PDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQ-----PSRHRRQRAPGLALVVTG 255
PD SA L + PEG P A+ P+ R AP LA
Sbjct: 895 PDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAF---- 950
Query: 256 VSRIRPAHGAPGLPRAPKPSAGRGGKEG-----GERGTEMLRRLRGSPRPNRHPRSGPVP 310
GAPG P P+ G G +G G E G+ P GP P
Sbjct: 951 -------RGAPGAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDP------GPSP 997
Query: 311 AHGVASAAAGPATLRAPPGRGASSET 336
AAAG G GASS +
Sbjct: 998 GTSGGKAAAG-------AGAGASSRS 1016
Score = 41.2 bits (95), Expect = 0.002
Identities = 77/270 (28%), Positives = 99/270 (36%), Gaps = 46/270 (17%)
Query: 155 PSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRPTWKAPDARLALGSARGPG 214
P+ RG R P + ++ SPG S + +G R P L + + + +A G A
Sbjct: 95 PASGRGERAPPA-KNTSPGPVSSPGRA-SGTTR-PGPLGQKGLRISAEETVARGKATEAP 151
Query: 215 RRLALHLQVPEGARQ--LGPRTGA-QPSRHRRQRAPGLALVVTGVSRIRPAHGAPGLPRA 271
+R AL GAR+ GP G P+ RR RA G T V RPA A P
Sbjct: 152 KRSALSA----GARRDTSGPTPGTPSPAMARRSRAAG-----TEVGLPRPAPSARPRPPT 202
Query: 272 -----------------PKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHP-RSGP----- 308
P P+A R GG R L S P P RSGP
Sbjct: 203 EGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGT 262
Query: 309 --VPAHGVASAAAGPATLRAP---PGRGASSETMWPTENLSSRRRAPPQRRRTRAPSIAR 363
PAH G LR P P R ++ + P LSS A P T+A +
Sbjct: 263 PRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGP---LSSSPLATPSPSGTKARPVPP 319
Query: 364 SLPGSGRLQGLIFPSTGKNVQRHKSPPLPS 393
+ L + PS +PP PS
Sbjct: 320 PDNAATPLPATLPPSPPLATPLPLAPPSPS 349
Score = 37.7 bits (86), Expect = 0.019
Identities = 48/165 (29%), Positives = 64/165 (38%), Gaps = 30/165 (18%)
Query: 245 RAPGLALVVTGVSRIRPAHGAPGLPRAPKPSA-------GRGGKEGGERGTEMLRRLRGS 297
RAPGL RP PG PR P P G G G + E + G+
Sbjct: 20 RAPGLLTP-------RP----PGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGA 68
Query: 298 PRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTR 357
P PR+GP + G +S PA+ GRG E P +N S + P R
Sbjct: 69 TIPESAPRAGPTRSAGTSS--RNPASRPPASGRG---ERAPPAKNTSPGPVSSPGR---- 119
Query: 358 APSIARSLPGSGRLQGLIFPSTGKNVQRHKSPPLPSEESLSQRSR 402
+ + PG +GL S + V R K+ P +LS +R
Sbjct: 120 --ASGTTRPGPLGQKGLRI-SAEETVARGKATEAPKRSALSAGAR 161
Score = 31.2 bits (69), Expect = 1.7
Identities = 88/400 (22%), Positives = 139/400 (34%), Gaps = 47/400 (11%)
Query: 13 LAAGAGQAWGSAGRGRRGPAPRGQTGTQG----VGSGGGGAGVRPEPCAGQRP-AGGKAL 67
+A + A G R P+ R + T+G V S + P P A +RP AGG
Sbjct: 176 MARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQ 235
Query: 68 RGEGQAQAAQGYAAANGWGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVP------SC 121
R ++ ++ ++ + + P+ P P + L LRPP+ P
Sbjct: 236 RPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPA 295
Query: 122 FPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASS 181
S+ ++ K RP P ++ A P + P SP A+P
Sbjct: 296 LGPLSSSPLATPSPSGTKARPV---PPPDNAATP---LPATLPPSPPLATP--------- 340
Query: 182 WAGVPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRH 241
+P P + P+ + + A ++ P +Q P + + P
Sbjct: 341 ---LPLAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTS 397
Query: 242 RRQRAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPN 301
+AP L ++ + + + G+P L A R T+ L RP
Sbjct: 398 PSLQAPPSPLALSSL-QATTSLGSPTL------QATHSFLTMSPRQTQ--ASLTSPSRPA 448
Query: 302 RHPRSGPVPAHGVASAAAGP--ATLRAPPGRGASSE-TMWPTENLSSRRRAPPQRRRTRA 358
P P P S A P T +P SS T+ P + LSS PQ A
Sbjct: 449 STPPDSP-PLQAPLSLPASPPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSPQ-----A 502
Query: 359 PSIARSLPGSGRLQGLIFPSTGKNVQRHKSPPLPSEESLS 398
P + +P L PS +PPL + SL+
Sbjct: 503 PLSSLIMPPLETQSSLAPPSLQTPPASLTTPPLENLPSLA 542
Score = 30.0 bits (66), Expect = 3.9
Identities = 75/308 (24%), Positives = 94/308 (30%), Gaps = 58/308 (18%)
Query: 95 PQDPRAAPPPGGRQLLLLRPPRWVPS---------------CFPNSQSADISQEDRKPAK 139
P P A PPP L L P + PS PN+ + + Q P
Sbjct: 610 PLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPP 669
Query: 140 RRPTH--FYHPDEHKAQPSHVRGSRRPGS----PRSASPGVGRSWASSWAGVP------- 186
P F P PS S+ P S P P S S + P
Sbjct: 670 SPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPP 729
Query: 187 --RQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQ 244
PL + P P + A R P A LQVP P + P
Sbjct: 730 LAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMS---PLAKPPP 786
Query: 245 RAPGLALVVTGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHP 304
+AP PA P L P P A G+ L SP P
Sbjct: 787 QAP-------------PALATPPLQALPSPPASFPGQAPFSPSAS----LPMSPLATPPP 829
Query: 305 RSGPVPAHGVASAAAGP---ATLRA---PPGRGASSETMWPTENLSSRRRAPPQRRRTRA 358
++ PV A + P TL+A PP G + P L+ PP +R+
Sbjct: 830 QAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPP--PSRS 887
Query: 359 PSIARSLP 366
PS S P
Sbjct: 888 PSSTLSGP 895
>gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 44.3 bits (103), Expect = 2e-04
Identities = 51/165 (30%), Positives = 64/165 (38%), Gaps = 24/165 (14%)
Query: 25 GRGRRGPAPRGQTGTQGVGSGGGGAGVRPEPCAGQRPAGGKALRGEGQAQAAQGYAAANG 84
G G P P G +G +GGGG G+ + QR AG A R G A + G
Sbjct: 20 GDGDEAPGPGGG---EGAAAGGGGGGLGSGGRSAQRRAGAGARRPIGAAPSVGPGGELQG 76
Query: 85 WGTVLVSGLVPQDPRAAPPPGGRQLLLLRPPRWVPSC---FPNSQSADISQEDRKP---- 137
WG SG P P GGR+L PPR + P +Q+A + R P
Sbjct: 77 WGR--KSGCRPPGPEGW--AGGRKLRRWLPPRRFSNFCCRSPCAQTAVRRRRRRAPSPRG 132
Query: 138 --------AKRRPTHFYHPDEHKAQPSHV--RGSRRPGSPRSASP 172
A R E A+P H+ RG RR + RS P
Sbjct: 133 AGWREGAGAGRGTPATMAGGEWAAEPLHLPQRGRRRRFTCRSGRP 177
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 44.3 bits (103), Expect = 2e-04
Identities = 82/321 (25%), Positives = 107/321 (33%), Gaps = 44/321 (13%)
Query: 26 RGRRGPAPRGQTGTQGVGS-GGGGAGVRPEPCAGQRPAGGKALRGEGQAQAAQGYAAANG 84
RG+ P+PR +QG G GGAG R +R + R A +G
Sbjct: 359 RGKESPSPRSAPSSQGRGGRAAGGAGRR-----RRRRRRRRRSRSSASAPRRRG------ 407
Query: 85 WGTVLVSGLVPQDPRAAPPPG-GRQLLLLRPP------RWVPSCFPNSQSADISQEDRKP 137
+ PR APP G R L R R P P S K
Sbjct: 408 ----------RRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKR 457
Query: 138 AKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGV-GRSWASSWAGVPRQPLALDLRP 196
AK RP + +H R G S SPG RSW+SS + + + + RP
Sbjct: 458 AKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKRP 517
Query: 197 --TWKAPDARLALGSAR-GPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVV 253
++P + L + G GR A H + E R P R RR+ +P
Sbjct: 518 HSPSRSPSPKKPLSRDKDGEGR--ARHSEA-EATRARRRSRSYSPIRKRRRDSPSF---- 570
Query: 254 TGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHG 313
RI A P P PS+ R SP P S +HG
Sbjct: 571 MEPRRITSARKRPIPYYRPSPSSSSSCLSSDYSTRSHSR----SPSPGHSHGSYSSRSHG 626
Query: 314 VASAAAGPATLRAPPGRGASS 334
S P+ +P SS
Sbjct: 627 TRSRTRSPSRTPSPSYHSRSS 647
Score = 38.9 bits (89), Expect = 0.008
Identities = 67/286 (23%), Positives = 92/286 (32%), Gaps = 42/286 (14%)
Query: 137 PAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAGVPRQPLALDLRP 196
P +R H + SH SR P GR S + R P
Sbjct: 248 PGRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKHRDEGRKTGSQRSSGSRSP------- 300
Query: 197 TWKAPDARLALGSAR---GPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLALVV 253
+P GS + G G+R H P G+ P + PS R +A A
Sbjct: 301 ---SPSGGSGWGSPQRNGGSGQRSGAHGGRP-GSAHSPPDKPSSPSPRVRDKAAAAAPTP 356
Query: 254 TGVSRIRPAHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGS---------------- 297
+ P+ PR+ S GRGG+ G G RR R
Sbjct: 357 PARGKESPS------PRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRR 410
Query: 298 PRPNRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTR 357
PRP S + +S+ +G PG SE ++ R P R +
Sbjct: 411 PRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPAST 470
Query: 358 APSIARSLPGS-GRLQGLIFPSTGKNVQRHKSPPLPSEESLSQRSR 402
+PS PG+ GR G S+ ++ H S RSR
Sbjct: 471 SPS-----PGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSR 511
Score = 38.1 bits (87), Expect = 0.014
Identities = 67/265 (25%), Positives = 89/265 (33%), Gaps = 45/265 (16%)
Query: 125 SQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGRSWASSWAG 184
S+S+ ++++ K+RP H P R S R S S SP + ++ S
Sbjct: 226 SRSSKCKRKEKNKEKKRP--------HTESPG--RRSHRHSSGSSHSPSLSSHYSDS--- 272
Query: 185 VPRQPLALDLRPTWKAPDARLALGSARGPGRRLALHLQVPEGARQLGPRTGAQPSRHRRQ 244
R P L + R GR+ Q G+R P G+ +R
Sbjct: 273 --RSPSRLSPKH--------------RDEGRKTGS--QRSSGSRSPSPSGGSGWGSPQRN 314
Query: 245 RAPGLALVVTGVSRIRPAHGAPGLPRAPKP----SAGRGGKEGGERGTEMLRRLRGSPRP 300
G G R AH P P +P P A RG E SP P
Sbjct: 315 GGSGQRSGAHG-GRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKE-------SPSP 366
Query: 301 NRHPRSGPVPAHGVASAAAGPATLRAPPGRGASSETMWPTENLSSRRRAPPQRRRTRAPS 360
P S G A+ AG R R + S P R R P R +R+ S
Sbjct: 367 RSAPSSQG--RGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLS 424
Query: 361 IARSLPGSGRLQGLIFPSTGKNVQR 385
ARS SG +G P +R
Sbjct: 425 RARSSSDSGSGRGAPGPGPEPGSER 449
>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform b [Homo sapiens]
Length = 2188
Score = 43.9 bits (102), Expect = 3e-04
Identities = 65/271 (23%), Positives = 92/271 (33%), Gaps = 49/271 (18%)
Query: 117 WVPSCFPNSQSADISQEDRKPAKRRPTHFYHPDEHKAQPSHVRGSRRPGSPRSASPGVGR 176
W+ + + S + P P F+HP +Q +G+ P+ A G
Sbjct: 1901 WLKHDSSQAPPSPFSPDASSPLLPMPAEFFHPAVSASQKGPEKGTGTGTLPKIALQG--- 1957
Query: 177 SWASSWAGVPR-----------QPLALDLRPTWKAPDARLALGS----ARGPGRRLALHL 221
SWAS + PR +LD P+ A + L + P R L
Sbjct: 1958 SWASLRS--PRVNCTLLRQATGSDTSLDASPSSSAGSLQTTLEDSLTLSDSPRRALGPPA 2015
Query: 222 QVPEGARQLGPRTGAQPSRHRRQRAPGLALV-VTGVSRIRPAHGAPGLPRA--------- 271
P GPR G P+ RR G L + G+ + +H + G
Sbjct: 2016 PAP------GPRAGLSPAARRRLSLRGRGLFSLRGLRAHQRSHSSGGSTSPGCTHHDSMD 2069
Query: 272 PKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSGPVPAHGVASAAAGPATLR-APPGR 330
P GRGG GG G+E L + P PA G+ A +T A PGR
Sbjct: 2070 PSDEEGRGGAGGGGAGSEHSETLSSLSLTSLFCPPPPPPAPGLTPARKFSSTSSLAAPGR 2129
Query: 331 --------GASSETMWPTENLSSRRRAPPQR 353
G + W + R + PP R
Sbjct: 2130 PHAAALAHGLARSPSWAAD----RSKDPPGR 2156
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,130,970
Number of Sequences: 37866
Number of extensions: 1487607
Number of successful extensions: 11154
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 992
Number of HSP's that attempted gapping in prelim test: 7930
Number of HSP's gapped (non-prelim): 3523
length of query: 402
length of database: 18,247,518
effective HSP length: 105
effective length of query: 297
effective length of database: 14,271,588
effective search space: 4238661636
effective search space used: 4238661636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.