Guide to the Human Genome
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Name: LOC100131891 Sequence: fasta or formatted (164aa) NCBI GI: 169168737
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {164aa} PREDICTED: hypothetical protein
alt mRNA {164aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         22           2
 C cysteine            2.4          4           1
 D aspartate           2.4          4           1
 E glutamate           3.7          6           1
 F phenylalanine       3.0          5           2
 G glycine             9.1         15           2
 H histidine           3.7          6           1
 I isoleucine          1.2          2           1
 K lysine              0.6          1           1
 L leucine             6.7         11           3
 M methionine          1.8          3           1
 N asparagine          1.2          2           1
 P proline             7.9         13           2
 Q glutamine           3.0          5           1
 R arginine           10.4         17           2
 S serine             14.0         23           3
 T threonine           6.1         10           1
 V valine              4.9          8           1
 W tryptophan          1.8          3           1
 Y tyrosine            2.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131891          1.000   PREDICTED: hypothetical protein 
LOC100131891          1.000   PREDICTED: hypothetical protein 
LOC100133756          0.032   PREDICTED: hypothetical protein, partial 
LOC100292124          0.029   PREDICTED: hypothetical protein XP_002346387 
LOC100293919          0.019   PREDICTED: hypothetical protein 
LOC729575             0.016   PREDICTED: hypothetical protein 
LOC100288110          0.016   PREDICTED: hypothetical protein 
LOC100288110          0.016   PREDICTED: hypothetical protein XP_002343007 
BSN                   0.016   bassoon protein 
APC                   0.016   adenomatous polyposis coli 
APC                   0.016   adenomatous polyposis coli 
APC                   0.016   adenomatous polyposis coli 
C3orf77               0.013   hypothetical protein LOC375337 
GPR157                0.013   G protein-coupled receptor 157 
FLG                   0.010   filaggrin 
C2orf27B              0.010   hypothetical protein LOC408029 
C2orf27A              0.010   hypothetical protein LOC29798 
COL11A2               0.010   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.010   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.010   collagen, type XI, alpha 2 isoform 1 preproprotein ...
SRRM2                 0.010   splicing coactivator subunit SRm300 
CITED2                0.010   Cbp/p300-interacting transactivator, with Glu/Asp-ri...
LOC100293409          0.010   PREDICTED: similar to Mucin-19 
LOC100292634          0.010   PREDICTED: hypothetical protein 
LOC729225             0.010   PREDICTED: hypothetical protein 
LOC100291118          0.010   PREDICTED: hypothetical protein XP_002347351 
LOC100289710          0.010   PREDICTED: hypothetical protein XP_002346701 
LOC729225             0.010   PREDICTED: hypothetical protein 
LOC100287737          0.010   PREDICTED: hypothetical protein XP_002343203 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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