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Search of human proteins with 169168052
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169168052 PREDICTED: hypothetical protein [Homo sapiens]
(60 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169168237 PREDICTED: hypothetical protein [Homo sapiens] 130 2e-31
gi|169168052 PREDICTED: hypothetical protein [Homo sapiens] 130 2e-31
gi|169167478 PREDICTED: hypothetical protein [Homo sapiens] 130 2e-31
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 32 0.11
gi|239752994 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 32 0.11
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 32 0.11
gi|239747548 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 32 0.11
gi|239746532 PREDICTED: ankyrin repeat domain 60 [Homo sapiens] 32 0.11
gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo sa... 32 0.11
gi|239757533 PREDICTED: ankyrin repeat domain 60 [Homo sapiens] 32 0.14
gi|239752049 PREDICTED: ankyrin repeat domain 60 [Homo sapiens] 32 0.14
gi|169206162 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|110832843 TBP-associated factor 4 [Homo sapiens] 31 0.19
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 31 0.25
gi|83267879 eukaryotic translation initiation factor 2B, subunit... 30 0.32
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 30 0.42
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 30 0.42
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 30 0.42
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 30 0.55
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 30 0.55
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens] 30 0.55
gi|58331253 obscurin, cytoskeletal calmodulin and titin-interact... 30 0.55
gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens] 30 0.55
gi|226371735 iroquois homeobox 3 [Homo sapiens] 30 0.55
gi|13775236 scratch [Homo sapiens] 30 0.55
gi|169171347 PREDICTED: hypothetical protein [Homo sapiens] 29 0.71
gi|169172209 PREDICTED: hypothetical protein [Homo sapiens] 29 0.71
gi|169170953 PREDICTED: hypothetical protein [Homo sapiens] 29 0.71
gi|239508753 PREDICTED: hypothetical protein [Homo sapiens] 29 0.71
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 29 0.71
>gi|169168237 PREDICTED: hypothetical protein [Homo sapiens]
Length = 60
Score = 130 bits (327), Expect = 2e-31
Identities = 60/60 (100%), Positives = 60/60 (100%)
Query: 1 MASLPHALGRQGPAGYAGGGARGASSAPPSGGRSRDAQGAGFRAGPRETCAKHCDGVYYT 60
MASLPHALGRQGPAGYAGGGARGASSAPPSGGRSRDAQGAGFRAGPRETCAKHCDGVYYT
Sbjct: 1 MASLPHALGRQGPAGYAGGGARGASSAPPSGGRSRDAQGAGFRAGPRETCAKHCDGVYYT 60
>gi|169168052 PREDICTED: hypothetical protein [Homo sapiens]
Length = 60
Score = 130 bits (327), Expect = 2e-31
Identities = 60/60 (100%), Positives = 60/60 (100%)
Query: 1 MASLPHALGRQGPAGYAGGGARGASSAPPSGGRSRDAQGAGFRAGPRETCAKHCDGVYYT 60
MASLPHALGRQGPAGYAGGGARGASSAPPSGGRSRDAQGAGFRAGPRETCAKHCDGVYYT
Sbjct: 1 MASLPHALGRQGPAGYAGGGARGASSAPPSGGRSRDAQGAGFRAGPRETCAKHCDGVYYT 60
>gi|169167478 PREDICTED: hypothetical protein [Homo sapiens]
Length = 60
Score = 130 bits (327), Expect = 2e-31
Identities = 60/60 (100%), Positives = 60/60 (100%)
Query: 1 MASLPHALGRQGPAGYAGGGARGASSAPPSGGRSRDAQGAGFRAGPRETCAKHCDGVYYT 60
MASLPHALGRQGPAGYAGGGARGASSAPPSGGRSRDAQGAGFRAGPRETCAKHCDGVYYT
Sbjct: 1 MASLPHALGRQGPAGYAGGGARGASSAPPSGGRSRDAQGAGFRAGPRETCAKHCDGVYYT 60
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 32.0 bits (71), Expect = 0.11
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 2 ASLPHALGRQGPAGYAGGGARGASSAPPSGGRSRDAQGA 40
A++P + R GP AG +R +S PP+ GR A A
Sbjct: 68 ATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPA 106
>gi|239752994 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 11 QGPAGYAGGGARGASSAPPSGGRSRDAQGAGFRAGPRETCAK 52
+G AG AG + G S+ PP G R+ D R PRE C++
Sbjct: 26 EGAAGQAG--SPGDSAVPPGGSRATDQDKRCRRNKPREKCSR 65
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 32.0 bits (71), Expect = 0.11
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 2 ASLPHALGRQGPAGYAGGGARGASSAPPSGGRSRDAQGA 40
A++P + R GP AG +R +S PP+ GR A A
Sbjct: 68 ATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPA 106
>gi|239747548 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 11 QGPAGYAGGGARGASSAPPSGGRSRDAQGAGFRAGPRETCAK 52
+G AG AG + G S+ PP G R+ D R PRE C++
Sbjct: 26 EGAAGQAG--SPGDSAVPPGGSRATDQDKRCRRNKPREKCSR 65
>gi|239746532 PREDICTED: ankyrin repeat domain 60 [Homo sapiens]
Length = 345
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 9 GRQGPAGYAGGGARGASSAPPSGGRSRDAQGAGFRAGPRETCAKHCDG 56
GR A GA GA +A P+GG SR AG R+G R A+ C G
Sbjct: 4 GRAWGMRRAAAGAGGARAAGPTGGASRLHPNAGRRSGAR-AGAQGCGG 50
>gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo
sapiens]
Length = 313
Score = 32.0 bits (71), Expect = 0.11
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 11 QGPAGYAGGGARGASSAPPSGGRSRDAQGAGFRAGPRETCAK 52
+G AG AG + G S+ PP G R+ D R PRE C++
Sbjct: 26 EGAAGQAG--SPGDSAVPPGGSRATDQDKRCRRNKPREKCSR 65
>gi|239757533 PREDICTED: ankyrin repeat domain 60 [Homo sapiens]
Length = 337
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 17 AGGGARGASSAPPSGGRSRDAQGAGFRAGPRETCAKHCDG 56
A GA GA +A P+GG SR AG R+G R A+ C G
Sbjct: 4 AAAGAGGARAAGPTGGASRLHPNAGRRSGAR-AGAQGCGG 42
>gi|239752049 PREDICTED: ankyrin repeat domain 60 [Homo sapiens]
Length = 337
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 17 AGGGARGASSAPPSGGRSRDAQGAGFRAGPRETCAKHCDG 56
A GA GA +A P+GG SR AG R+G R A+ C G
Sbjct: 4 AAAGAGGARAAGPTGGASRLHPNAGRRSGAR-AGAQGCGG 42
>gi|169206162 PREDICTED: hypothetical protein [Homo sapiens]
Length = 120
Score = 31.2 bits (69), Expect = 0.19
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 10 RQGPAGYAGGGARGASSAPPSGG--RSRDAQGAGFRAGPRETCAKHCDG 56
++G G+ A PP+ G RSR +GAG ++ PR C CDG
Sbjct: 60 QRGKRGWLSVPASLGVPPPPAIGVLRSRGGRGAGSQSPPRGGCLPPCDG 108
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 31.2 bits (69), Expect = 0.19
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 13 PAGYAGGG-------ARGASSAPPSGGRSRDAQGAGFRAGP 46
PAG AG G A GA+ PP GR+R G R GP
Sbjct: 67 PAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGP 107
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 30.8 bits (68), Expect = 0.25
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 8 LGRQGPAGYAGGG------ARGASSAPPSGGRSRDAQGAGFRAGPRETCA 51
LGR+GPAG GGG + +P S D+ G+G P++ A
Sbjct: 532 LGRRGPAGGVGGGYGESESSASEGESPAFSSASSDSDGSGGLVWPQQLVA 581
>gi|83267879 eukaryotic translation initiation factor 2B, subunit
5 epsilon, 82kDa [Homo sapiens]
Length = 721
Score = 30.4 bits (67), Expect = 0.32
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 12 GPAGYAGGGARGASSAPP 29
GP G GGGARGA PP
Sbjct: 23 GPGGSGGGGARGAEEEPP 40
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 30.0 bits (66), Expect = 0.42
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 18/64 (28%)
Query: 4 LPHALGRQGPAGYAG----------GGARGASSAP-------PSGGR-SRDAQGAGFRAG 45
LP GRQGP G G GARG + P P+G R SR A+G + G
Sbjct: 854 LPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPG 913
Query: 46 PRET 49
P+ T
Sbjct: 914 PKGT 917
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 30.0 bits (66), Expect = 0.42
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 18/64 (28%)
Query: 4 LPHALGRQGPAGYAG----------GGARGASSAP-------PSGGR-SRDAQGAGFRAG 45
LP GRQGP G G GARG + P P+G R SR A+G + G
Sbjct: 803 LPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPG 862
Query: 46 PRET 49
P+ T
Sbjct: 863 PKGT 866
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 30.0 bits (66), Expect = 0.42
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 18/64 (28%)
Query: 4 LPHALGRQGPAGYAG----------GGARGASSAP-------PSGGR-SRDAQGAGFRAG 45
LP GRQGP G G GARG + P P+G R SR A+G + G
Sbjct: 842 LPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPG 901
Query: 46 PRET 49
P+ T
Sbjct: 902 PKGT 905
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 29.6 bits (65), Expect = 0.55
Identities = 22/46 (47%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 4 LPHALGRQGPAGYAGGGARGASSAP-PSG--GRSRDAQGAGFRAGP 46
LP GR GPAG A GARG P P+G G A G GF P
Sbjct: 328 LPGERGRTGPAGAA--GARGNDGQPGPAGPPGPVGPAGGPGFPGAP 371
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 7 ALGRQGPAGYAG-GGARGASSAPPSGGRSRDAQGAGFRAGP 46
A G QGP G G GARGA P + G GA R GP
Sbjct: 871 APGPQGPTGVTGPKGARGAQGPPGATG----FPGAAGRVGP 907
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 29.6 bits (65), Expect = 0.55
Identities = 22/46 (47%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 4 LPHALGRQGPAGYAGGGARGASSAP-PSG--GRSRDAQGAGFRAGP 46
LP GR GPAG A GARG P P+G G A G GF P
Sbjct: 259 LPGERGRTGPAGAA--GARGNDGQPGPAGPPGPVGPAGGPGFPGAP 302
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 7 ALGRQGPAGYAG-GGARGASSAPPSGGRSRDAQGAGFRAGP 46
A G QGP G G GARGA P + G GA R GP
Sbjct: 802 APGPQGPTGVTGPKGARGAQGPPGATG----FPGAAGRVGP 838
>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
Length = 474
Score = 29.6 bits (65), Expect = 0.55
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 8 LGRQGPAGYAGGGARGASSAPPSGGRSRDAQGAGFRAGPRETCAKHCDG 56
+G G G+ GGG G+S+A GG GA + +++C G
Sbjct: 158 VGGSGGGGHGGGGGGGSSNA-GGGGGGASGGGANSKPAQKKSCGSKVAG 205
>gi|58331253 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform a [Homo sapiens]
Length = 6620
Score = 29.6 bits (65), Expect = 0.55
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 1 MASLPHALGRQGPAGYAGGGARGASSAPPSGGRSRDAQGAGF 42
+ S+ HALG +GP G RGAS P G + R +G F
Sbjct: 6514 LLSVGHALGPRGPLGLFRPEPRGAS---PPGPQVRSLEGTSF 6552
>gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 2240
Score = 29.6 bits (65), Expect = 0.55
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 5 PHALGRQGPAGYAGGGARGASSAPPSGG 32
P A R+G G AG G R ++S+PP+ G
Sbjct: 26 PAAWPREGAGGVAGSGDRQSTSSPPARG 53
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/39 (41%), Positives = 17/39 (43%)
Query: 13 PAGYAGGGARGASSAPPSGGRSRDAQGAGFRAGPRETCA 51
P A G S A P GG AQG+G R G T A
Sbjct: 277 PEAVASRAVAGLSPALPPGGLEEMAQGSGGREGALRTPA 315
>gi|226371735 iroquois homeobox 3 [Homo sapiens]
Length = 501
Score = 29.6 bits (65), Expect = 0.55
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 5 PHALGRQGPAGYAGGGARGASSAPPSGGRSR 35
PH LG G AG+ A A A P GG R
Sbjct: 433 PHLLGLPGAAGHPAAAAAFARPAEPEGGTDR 463
>gi|13775236 scratch [Homo sapiens]
Length = 348
Score = 29.6 bits (65), Expect = 0.55
Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 12/70 (17%)
Query: 2 ASLPHALGRQGPAGYAGGGA----RGASSAPPSGGRSRDAQGAGFRAGP-------RETC 50
A+ P P G AGGG R S P G +R G RAGP R C
Sbjct: 134 AAAPSTASAAAPDGDAGGGGGAGGRSLGSGPGGRGGTRAGAGTEARAGPGAAGAGGRHAC 193
Query: 51 AKHCDGVYYT 60
+ C Y T
Sbjct: 194 GE-CGKTYAT 202
>gi|169171347 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1128
Score = 29.3 bits (64), Expect = 0.71
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 8 LGRQGPAGYAGGGA--RGASSAPPSGGRSRDAQGAGFRAGPRETCAKHCDGV 57
+GR G AG GA RGA S G R A+GA + GPR +H + V
Sbjct: 455 VGRAAVTGEAGAGAAGRGAQSVRGPGVERRVAEGAQ-QFGPRVGLRQHAERV 505
>gi|169172209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 29.3 bits (64), Expect = 0.71
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 8 LGRQGPAGYAGGGA--RGASSAPPSGGRSRDAQGAGFRAGPRETCAKHCDGV 57
+GR G AG GA RGA S G R A+GA + GPR +H + V
Sbjct: 128 VGRAAVTGEAGAGAAGRGAQSVRGPGVERRVAEGAQ-QFGPRVGLRQHAERV 178
>gi|169170953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 29.3 bits (64), Expect = 0.71
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 8 LGRQGPAGYAGGGA--RGASSAPPSGGRSRDAQGAGFRAGPRETCAKHCDGV 57
+GR G AG GA RGA S G R A+GA + GPR +H + V
Sbjct: 128 VGRAAVTGEAGAGAAGRGAQSVRGPGVERRVAEGAQ-QFGPRVGLRQHAERV 178
>gi|239508753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 29.3 bits (64), Expect = 0.71
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 8 LGRQGPAGYAGGGA--RGASSAPPSGGRSRDAQGAGFRAGPRETCAKHCDGV 57
+GR G AG GA RGA S G R A+GA + GPR +H + V
Sbjct: 128 VGRAAVTGEAGAGAAGRGAQSVRGPGVERRVAEGAQ-QFGPRVGLRQHAERV 178
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 29.3 bits (64), Expect = 0.71
Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 9 GRQGPA---GYAGGGARGASSA--PPSGGRSRDAQGAGFRAGPRETC 50
GR GP GY GGG+ G P GG Q AG P TC
Sbjct: 387 GRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTC 433
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 9 GRQGPAGYAGGGARGASSAPPSGGRSRDAQGAGFRAG 45
G G +GGG G GGR R G G G
Sbjct: 192 GGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGG 228
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,191,140
Number of Sequences: 37866
Number of extensions: 145996
Number of successful extensions: 2183
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 1718
Number of HSP's gapped (non-prelim): 542
length of query: 60
length of database: 18,247,518
effective HSP length: 33
effective length of query: 27
effective length of database: 16,997,940
effective search space: 458944380
effective search space used: 458944380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.